Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002541

Physical Location & Seq

Genomic Coordinates Reverse (-)

53281616 .. 53283458

Gene Structure 1843 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0387800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCCGAGTTGCTAGACCTGCCAGAAGTCCTGATTATCCAACCACCACCGCCCTTCACATCTTTCGAATCCGACTTCACCCAAAAGTTCAACATACTGCGAGCATGGGAATCATCTCTCCCTCTGGACCAGTTCCTCACCACCCACGCCCAATCAGTCCAGGCCCTCCTTTGCCACGTTTTCACTCCCGTCAACGGCGACCTCCTCCGGCTGCTACCGGCGCTGAAGCTCGTGGTGTCTGTCAGCACCGGCGCCAACCACGTGGACAAAGCTGAGTGCCGGAGGCGTGGGATTGCGGTGACCAATGCCGGAAATGCGTACTCGGAAGATGTTGCTGATATGGCTGTTGGGTTGTTCATCGATGTGAATCGGATAATTTCAGCAGCTGATTGGTACGTTAGACGTGGGCTTTGGTCTAGCAAGGGAGACTATCCTCTTGGTTCCAAGATAAGTGGAAAGCGAGTAGGTATTGTTGGATTGGGAAACATTGGCTATGAAGTTGCCAAAAGACTTGAGGGCTTTGGCTGCAAGATCTCATACAACTCAAGGAGCGAAAGGCCGTCTTTGTCATACCCCTTCTATTCCAATGTCTGTGAGCTCGCAGCTAATAGTGATGCCCTCATCATCTGTTGTGCATTGACAGACCAAACCCGCCACATGATCAACAAGGAAGTCTTATCTGCGTTGGGCAAAGATGGGGTGGTAGTTAATATAGGGCGTGGGGCAATTATTGATGAGAAAGAATTGGTCAAGTGTTTGGTGAATGGAGAGATCAGAGGTGCTGGTTTGGATGTGTTTGAGAATGAGCCTCATATACCGAAAGAGCTTGTGGCAATGGACAATGTTGTTCTGTCTCCACATAAGGCTGTTCTTACCCTAGAGTCTTTCAAGAGAGGAAGTGAAGTAATGATCGCCAATTTGGAAGCTTTCTTCTCCAACAAACCTTTGGTTACTCCAGTCATGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0022622 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04931 map04016 map04075 map04931

Pfam Domains

Protein Families

PP2C

Protein Analysis

322

Amino Acids

35.17

Weight (kDa)

5.76

Isoelectric Point (pI)

43.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-Hacid_dh	PF00389	46 - 320	3.5e-20	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2-Hacid_dh_C	PF02826	117 - 289	1.6e-50	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002541)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450
malus_domestica	MD08G1066300.v1.1 MD15G1054500.v1.1
prunus_persica	Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1
pyrus_communis	pycom08g05500 pycom15g05160
rosa_chinensis	RchiOBHm_Chr6g0311361
rosa_laevigata	RLG00000010413
rosa_multiflora	Rmu_sc0008536.1_g000009
rosa_roxburghii	Rroxscaffold_7G00157690
rosa_rugosa	Rorug06G0387800 Rorug06G0387900 Rorug06G0388000 Rorug06G0388100 Rorug06G0388200
rosa_samantha	Rh6AG502500 Rh6BG513200 Rh6CG519000 Rh6DG505200
rosa_wichuraiana	Rw6G043760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	27
AccB1I	GGYRCC	1 cut(s)	251
AciI	CCGC	3 cut(s)	50, 296, 652
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	245
AcvI	CACGTG	1 cut(s)	262
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	2 cut(s)	320, 395
AfiI	CCNNNNNNNGG	1 cut(s)	194
AgsI	TTSAA	2 cut(s)	91, 889
AjiI	CACGTC	1 cut(s)	404
AjnI	CCWGG	1 cut(s)	159
AluBI	AGCT	7 cut(s)	229, 272, 386, 598, 605, 826, 926
AluI	AGCT	7 cut(s)	229, 272, 386, 598, 605, 826, 926
Alw21I	GWGCWC	1 cut(s)	600
Alw26I	GTCTC	2 cut(s)	420, 858
AlwNI	CAGNNNCTG	1 cut(s)	386
AoxI	GGCC	3 cut(s)	3, 162, 557
ApeKI	GCWGC	4 cut(s)	211, 383, 525, 602
ArsI	GACNNNNNNTTYG	2 cut(s)	393, 425
AspLEI	GCGC	2 cut(s)	223, 254
AspS9I	GGNCC	2 cut(s)	127, 163
AsuHPI	GGTGA	4 cut(s)	70, 130, 310, 772
AsuII	TTCGAA	1 cut(s)	66
AvaII	GGWCC	1 cut(s)	127
BanI	GGYRCC	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	600
BauI	CACGAG	1 cut(s)	230
BbrPI	CACGTG	1 cut(s)	262
Bbv12I	GWGCWC	1 cut(s)	600
BbvI	GCAGC	4 cut(s)	198, 395, 512, 614
BccI	CCATC	1 cut(s)	689
BceAI	ACGGC	2 cut(s)	211, 544
BciT130I	CCWGG	1 cut(s)	161
BclI	TGATCA	1 cut(s)	660
BcoDI	GTCTC	2 cut(s)	420, 858
BfaI	CTAG	3 cut(s)	14, 417, 878
BfoI	RGCGCY	2 cut(s)	224, 255
BfuAI	ACCTGC	1 cut(s)	27
BglII	AGATCT	1 cut(s)	531
BisI	GCNGC	4 cut(s)	212, 384, 526, 603
BlsI	GCNGC	4 cut(s)	213, 385, 527, 604
Bme1390I	CCNGG	1 cut(s)	161
Bme18I	GGWCC	1 cut(s)	127
BmgBI	CACGTC	1 cut(s)	404
BmgT120I	GGNCC	2 cut(s)	127, 163
BmiI	GGNNCC	2 cut(s)	253, 442
BmrFI	CCNGG	1 cut(s)	161
BmsI	GCATC	1 cut(s)	604
BpmI	CTGGAG	1 cut(s)	939
Bpu14I	TTCGAA	1 cut(s)	66
BpuEI	CTTGAG	2 cut(s)	529, 533
Bsa29I	ATCGAT	1 cut(s)	360
BsaAI	YACGTR	1 cut(s)	262
BsaBI	GATNNNNATC	1 cut(s)	366
BsaHI	GRCGYC	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse118I	RCCGGY	2 cut(s)	217, 248
Bse1I	ACTGG	2 cut(s)	130, 956
Bse3DI	GCAATG	1 cut(s)	840
Bse8I	GATNNNNATC	1 cut(s)	366
BseBI	CCWGG	1 cut(s)	161
BseCI	ATCGAT	1 cut(s)	360
BseGI	GGATG	1 cut(s)	796
BseJI	GATNNNNATC	1 cut(s)	366
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMI	GCAATG	1 cut(s)	840
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	2 cut(s)	130, 956
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	4 cut(s)	198, 395, 512, 614
BshFI	GGCC	3 cut(s)	5, 164, 559
BshNI	GGYRCC	1 cut(s)	251
BshVI	ATCGAT	1 cut(s)	360
BsiHKAI	GWGCWC	1 cut(s)	600
BsiSI	CCGG	5 cut(s)	208, 218, 249, 280, 309
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	2 cut(s)	420, 858
BsnI	GGCC	3 cut(s)	5, 164, 559
Bsp119I	TTCGAA	1 cut(s)	66
Bsp1286I	GDGCHC	1 cut(s)	600
Bsp143I	GATC	4 cut(s)	531, 660, 771, 909
BspACI	CCGC	3 cut(s)	50, 296, 652
BspANI	GGCC	3 cut(s)	5, 164, 559
BspCNI	CTCAG	1 cut(s)	265
BspDI	ATCGAT	1 cut(s)	360
BspLI	GGNNCC	2 cut(s)	253, 442
BspMI	ACCTGC	1 cut(s)	27
BspT104I	TTCGAA	1 cut(s)	66
BspT107I	GGYRCC	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	840
BsrFI	RCCGGY	2 cut(s)	217, 248
BsrI	ACTGG	2 cut(s)	130, 956
BssAI	RCCGGY	2 cut(s)	217, 248
BssMI	GATC	4 cut(s)	531, 660, 771, 909
BssNI	GRCGYC	1 cut(s)	252
BssSI	CACGAG	1 cut(s)	230
Bst2BI	CACGAG	1 cut(s)	230
Bst2UI	CCWGG	1 cut(s)	161
BstACI	GRCGYC	1 cut(s)	252
BstBAI	YACGTR	1 cut(s)	262
BstBI	TTCGAA	1 cut(s)	66
BstC8I	GCNNGC	2 cut(s)	102, 600
BstDEI	CTNAG	1 cut(s)	273
BstEII	GGTNACC	1 cut(s)	298
BstF5I	GGATG	1 cut(s)	796
BstH2I	RGCGCY	2 cut(s)	224, 255
BstHHI	GCGC	2 cut(s)	223, 254
BstKTI	GATC	4 cut(s)	534, 663, 774, 912
BstMAI	GTCTC	2 cut(s)	420, 858
BstMBI	GATC	4 cut(s)	531, 660, 771, 909
BstMWI	GCNNNNNNNGC	5 cut(s)	19, 220, 314, 341, 525
BstNI	CCWGG	1 cut(s)	161
BstPI	GGTNACC	1 cut(s)	298
BstSCI	CCNGG	1 cut(s)	159
BstV1I	GCAGC	4 cut(s)	198, 395, 512, 614
BstX2I	RGATCY	1 cut(s)	531
BstXI	CCANNNNNNTGG	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	531
Bsu15I	ATCGAT	1 cut(s)	360
BsuRI	GGCC	3 cut(s)	5, 164, 559
BsuTUI	ATCGAT	1 cut(s)	360
BtrI	CACGTC	1 cut(s)	404
BtsCI	GGATG	1 cut(s)	796
BveI	ACCTGC	1 cut(s)	27
Cac8I	GCNNGC	2 cut(s)	102, 600
CaiI	CAGNNNCTG	1 cut(s)	386
CfoI	GCGC	2 cut(s)	223, 254
Cfr10I	RCCGGY	2 cut(s)	217, 248
Cfr13I	GGNCC	2 cut(s)	127, 163
ClaI	ATCGAT	1 cut(s)	360
Csp6I	GTAC	2 cut(s)	319, 394
CspCI	CAANNNNNGTGG	2 cut(s)	433, 468
CviAII	CATG	3 cut(s)	105, 658, 961
CviQI	GTAC	2 cut(s)	319, 394
DdeI	CTNAG	1 cut(s)	273
DinI	GGCGCC	1 cut(s)	253
DpnI	GATC	4 cut(s)	533, 662, 773, 911
DpnII	GATC	4 cut(s)	531, 660, 771, 909
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	598
Eco24I	GRGCYC	1 cut(s)	600
Eco47I	GGWCC	1 cut(s)	127
Eco53kI	GAGCTC	1 cut(s)	598
Eco57I	CTGAAG	1 cut(s)	245
Eco72I	CACGTG	1 cut(s)	262
Eco91I	GGTNACC	1 cut(s)	298
EcoICRI	GAGCTC	1 cut(s)	598
EcoO109I	RGGNCCY	1 cut(s)	163
EcoO65I	GGTNACC	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	159
EcoT38I	GRGCYC	1 cut(s)	600
EgeI	GGCGCC	1 cut(s)	253
EheI	GGCGCC	1 cut(s)	253
FaeI	CATG	3 cut(s)	108, 661, 964
FalI	AAGNNNNNCTT	4 cut(s)	547, 579, 659, 691
FatI	CATG	3 cut(s)	104, 657, 960
FauI	CCCGC	1 cut(s)	659
FbaI	TGATCA	1 cut(s)	660
Fnu4HI	GCNGC	4 cut(s)	212, 384, 526, 603
FokI	GGATG	1 cut(s)	803
FriOI	GRGCYC	1 cut(s)	600
Fsp4HI	GCNGC	4 cut(s)	212, 384, 526, 603
FspBI	CTAG	3 cut(s)	14, 417, 878
GlaI	GCGC	2 cut(s)	222, 253
GluI	GCNGC	4 cut(s)	212, 384, 526, 603
GsuI	CTGGAG	1 cut(s)	939
HaeII	RGCGCY	2 cut(s)	224, 255
HaeIII	GGCC	3 cut(s)	5, 164, 559
HapII	CCGG	5 cut(s)	208, 218, 249, 280, 309
HhaI	GCGC	2 cut(s)	223, 254
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	3 cut(s)	108, 661, 964
Hin6I	GCGC	2 cut(s)	221, 252
HinP1I	GCGC	2 cut(s)	221, 252
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HindIII	AAGCTT	1 cut(s)	924
HinfI	GANTC	4 cut(s)	68, 110, 367, 881
HpaII	CCGG	5 cut(s)	208, 218, 249, 280, 309
HphI	GGTGA	4 cut(s)	70, 130, 310, 772
Hpy166II	GTNNAC	2 cut(s)	193, 265
Hpy188I	TCNGA	4 cut(s)	73, 325, 372, 776
Hpy188III	TCNNGA	3 cut(s)	31, 125, 889
Hpy8I	GTNNAC	2 cut(s)	193, 265
HpyAV	CCTTC	2 cut(s)	64, 586
HpyCH4IV	ACGT	4 cut(s)	177, 261, 396, 403
HpyCH4V	TGCA	2 cut(s)	528, 635
HpyF10VI	GCNNNNNNNGC	5 cut(s)	19, 220, 314, 341, 525
HpyF3I	CTNAG	1 cut(s)	273
HpySE526I	ACGT	4 cut(s)	177, 261, 396, 403
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	3 cut(s)	108, 661, 964
HspAI	GCGC	2 cut(s)	221, 252
KasI	GGCGCC	1 cut(s)	251
Ksp22I	TGATCA	1 cut(s)	660
Kzo9I	GATC	4 cut(s)	531, 660, 771, 909
LmnI	GCTCC	1 cut(s)	549
Lsp1109I	GCAGC	4 cut(s)	198, 395, 512, 614
LweI	GCATC	1 cut(s)	604
MaeI	CTAG	3 cut(s)	14, 417, 878
MaeII	ACGT	4 cut(s)	177, 261, 396, 403
MaeIII	GTNAC	2 cut(s)	298, 949
MalI	GATC	4 cut(s)	533, 662, 773, 911
MboI	GATC	4 cut(s)	531, 660, 771, 909
MboII	GAAGA	2 cut(s)	338, 922
MflI	RGATCY	1 cut(s)	531
MhlI	GDGCHC	1 cut(s)	600
MluCI	AATT	4 cut(s)	375, 726, 743, 916
Mly113I	GGCGCC	1 cut(s)	252
MlyI	GAGTC	1 cut(s)	890
MmeI	TCCRAC	4 cut(s)	64, 96, 454, 960
MseI	TTAA	2 cut(s)	708, 967
MslI	CAYNNNNRTG	1 cut(s)	362
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	5 cut(s)	208, 218, 249, 280, 309
MspR9I	CCNGG	1 cut(s)	161
MvaI	CCWGG	1 cut(s)	161
MwoI	GCNNNNNNNGC	5 cut(s)	19, 220, 314, 341, 525
NarI	GGCGCC	1 cut(s)	252
NdeII	GATC	4 cut(s)	531, 660, 771, 909
NlaIII	CATG	3 cut(s)	108, 661, 964
NlaIV	GGNNCC	2 cut(s)	253, 442
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	298
NspV	TTCGAA	1 cut(s)	66
PfeI	GAWTC	3 cut(s)	68, 110, 367
PkrI	GCNGC	4 cut(s)	213, 385, 527, 604
PleI	GAGTC	1 cut(s)	889
PluTI	GGCGCC	1 cut(s)	255
PmaCI	CACGTG	1 cut(s)	262
PmlI	CACGTG	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	889
Ppu21I	YACGTR	1 cut(s)	262
Psp124BI	GAGCTC	1 cut(s)	600
Psp6I	CCWGG	1 cut(s)	159
PspCI	CACGTG	1 cut(s)	262
PspEI	GGTNACC	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	159
PspN4I	GGNNCC	2 cut(s)	253, 442
PspPI	GGNCC	2 cut(s)	127, 163
PstNI	CAGNNNCTG	1 cut(s)	386
PsuI	RGATCY	1 cut(s)	531
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	2 cut(s)	320, 395
RsaNI	GTAC	2 cut(s)	319, 394
RseI	CAYNNNNRTG	1 cut(s)	362
SacI	GAGCTC	1 cut(s)	600
SaqAI	TTAA	2 cut(s)	708, 967
SatI	GCNGC	4 cut(s)	212, 384, 526, 603
Sau3AI	GATC	4 cut(s)	531, 660, 771, 909
Sau96I	GGNCC	2 cut(s)	127, 163
SchI	GAGTC	1 cut(s)	890
ScrFI	CCNGG	1 cut(s)	161
SduI	GDGCHC	1 cut(s)	600
SfaNI	GCATC	1 cut(s)	604
SfoI	GGCGCC	1 cut(s)	253
SfuI	TTCGAA	1 cut(s)	66
SgrAI	CRCCGGYG	1 cut(s)	248
SinI	GGWCC	1 cut(s)	127
SmiMI	CAYNNNNRTG	1 cut(s)	362
SmlI	CTYRAG	2 cut(s)	512, 544
SmoI	CTYRAG	2 cut(s)	512, 544
Sse9I	AATT	4 cut(s)	375, 726, 743, 916
SsiI	CCGC	3 cut(s)	50, 296, 652
SspDI	GGCGCC	1 cut(s)	251
SspMI	CTAG	3 cut(s)	14, 417, 878
SstI	GAGCTC	1 cut(s)	600
StyD4I	CCNGG	1 cut(s)	159
TaiI	ACGT	4 cut(s)	180, 264, 399, 406
TaqI	TCGA	2 cut(s)	66, 360
TasI	AATT	4 cut(s)	375, 726, 743, 916
TfiI	GAWTC	3 cut(s)	68, 110, 367
Tru1I	TTAA	2 cut(s)	708, 967
Tru9I	TTAA	2 cut(s)	708, 967
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	4 cut(s)	211, 383, 525, 602
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	2 cut(s)	346, 510
VpaK11BI	GGWCC	1 cut(s)	127
XcmI	CCANNNNNNNNNTGG	1 cut(s)	943
XspI	CTAG	3 cut(s)	14, 417, 878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.