Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002541

Physical Location & Seq

Genomic Coordinates Reverse (-)

53287103 .. 53287701

Gene Structure 599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0388000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGATCGATTCAGTTCCGGCTCCTGAAGTCGATCATGGATATTCATACACCACTCTCACCGTAGAAAAAATATGCAGTATCGTAAATTTCAAGCTCAAGACGCGCGAGATCGAACCCTGTCCCGATCCGTTCCTGATTGATAAGAACGGAAACCTCACGAATCAAGTCAATCTGGCCTTCGATGTTGCGCATGAGAAGGATCAGAGGATCATAACGTGGATCAAATCGACTCTTTCCGAAGACGTGGTGATCCCACTAGTCACAACCGGAGTCATACCTTCGAATTCGTCTTGTGAGCTTTGGCTTAGCATCGCGAAGAGATTCGCAGTCGTGGGGGTGTCAGCCGAGTACAGGAGAAGCCTGGTCGCGGCCGCCTTGGCAACCACCGACATTTGGGACGCAAATCTCGCTCGGTTGGACAGCGGGGACTTGCGTCTTTTGGAGCCAAATTTTCAAAGATTCGGAAAATGGCACGCGTTTTCCGTTTTCGGGTCGGGTGGTGACCTTGAAGGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0022622 GO:0023051 GO:0023057 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0099402 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04931 map04016 map04075 map04931

Pfam Domains

Protein Families

PP2C

Protein Analysis

172

Amino Acids

19.0

Weight (kDa)

5.02

Isoelectric Point (pI)

28.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002541)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450 FvH4_2g31450
malus_domestica	MD08G1066300.v1.1 MD15G1054500.v1.1
prunus_persica	Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1 Prupe.1G408100_v2.0.a1
pyrus_communis	pycom08g05500 pycom15g05160
rosa_chinensis	RchiOBHm_Chr6g0311361
rosa_laevigata	RLG00000010413
rosa_multiflora	Rmu_sc0008536.1_g000009
rosa_roxburghii	Rroxscaffold_7G00157690
rosa_rugosa	Rorug06G0387800 Rorug06G0387900 Rorug06G0388000 Rorug06G0388100 Rorug06G0388200
rosa_samantha	Rh6AG502500 Rh6BG513200 Rh6CG519000 Rh6DG505200
rosa_wichuraiana	Rw6G043760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	189
AccII	CGCG	5 cut(s)	103, 105, 314, 368, 476
AciI	CCGC	3 cut(s)	368, 372, 423
AclWI	GGATC	5 cut(s)	119, 207, 215, 227, 244
AcoI	YGGCCR	1 cut(s)	369
AcsI	RAATTY	3 cut(s)	85, 283, 448
AcuI	CTGAAG	1 cut(s)	45
AfaI	GTAC	1 cut(s)	350
AfiI	CCNNNNNNNGG	4 cut(s)	351, 367, 393, 489
AflIII	ACRYGT	1 cut(s)	474
AgsI	TTSAA	3 cut(s)	91, 455, 509
AhlI	ACTAGT	1 cut(s)	256
AjiI	CACGTC	1 cut(s)	244
AjnI	CCWGG	1 cut(s)	360
AluBI	AGCT	2 cut(s)	94, 298
AluI	AGCT	2 cut(s)	94, 298
AlwI	GGATC	5 cut(s)	119, 207, 215, 227, 244
AoxI	GGCC	2 cut(s)	174, 369
ApoI	RAATTY	3 cut(s)	85, 283, 448
Asp700I	GAANNNNTTC	1 cut(s)	320
AspLEI	GCGC	2 cut(s)	105, 190
AsuHPI	GGTGA	3 cut(s)	49, 259, 512
AsuII	TTCGAA	1 cut(s)	281
BbsI	GAAGAC	1 cut(s)	246
BciT130I	CCWGG	1 cut(s)	362
BcuI	ACTAGT	1 cut(s)	256
BfaI	CTAG	1 cut(s)	257
BglI	GCCNNNNNGGC	1 cut(s)	377
BisI	GCNGC	2 cut(s)	369, 372
BlpI	GCTNAGC	1 cut(s)	305
BlsI	GCNGC	2 cut(s)	370, 373
Bme1390I	CCNGG	1 cut(s)	362
BmgBI	CACGTC	1 cut(s)	244
BmiI	GGNNCC	2 cut(s)	21, 444
BmrFI	CCNGG	1 cut(s)	362
BmsI	GCATC	1 cut(s)	318
BoxI	GACNNNNGTC	1 cut(s)	432
BpiI	GAAGAC	1 cut(s)	246
Bpu1102I	GCTNAGC	1 cut(s)	305
Bpu14I	TTCGAA	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	80
Bsa29I	ATCGAT	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	375
BsaWI	WCCGGW	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	4 cut(s)	351, 367, 393, 489
BseBI	CCWGG	1 cut(s)	362
BseCI	ATCGAT	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	375
BseLI	CCNNNNNNNGG	4 cut(s)	351, 367, 393, 489
BseX3I	CGGCCG	1 cut(s)	369
Bsh1236I	CGCG	5 cut(s)	103, 105, 314, 368, 476
Bsh1285I	CGRYCG	1 cut(s)	372
BshFI	GGCC	2 cut(s)	176, 371
BshVI	ATCGAT	1 cut(s)	6
BsiEI	CGRYCG	1 cut(s)	372
BsiSI	CCGG	2 cut(s)	17, 267
BslFI	GGGAC	3 cut(s)	105, 410, 440
BslI	CCNNNNNNNGG	4 cut(s)	351, 367, 393, 489
BsmFI	GGGAC	3 cut(s)	105, 410, 440
BsnI	GGCC	2 cut(s)	176, 371
Bsp119I	TTCGAA	1 cut(s)	281
Bsp143I	GATC	8 cut(s)	3, 31, 108, 124, 199, 207, 219, 249
Bsp1720I	GCTNAGC	1 cut(s)	305
Bsp68I	TCGCGA	1 cut(s)	314
BspACI	CCGC	3 cut(s)	368, 372, 423
BspANI	GGCC	2 cut(s)	176, 371
BspDI	ATCGAT	1 cut(s)	6
BspFNI	CGCG	5 cut(s)	103, 105, 314, 368, 476
BspLI	GGNNCC	2 cut(s)	21, 444
BspPI	GGATC	5 cut(s)	119, 207, 215, 227, 244
BspT104I	TTCGAA	1 cut(s)	281
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	8 cut(s)	3, 31, 108, 124, 199, 207, 219, 249
BssT1I	CCWWGG	1 cut(s)	375
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	311
BstBI	TTCGAA	1 cut(s)	281
BstC8I	GCNNGC	1 cut(s)	474
BstDEI	CTNAG	1 cut(s)	305
BstEII	GGTNACC	1 cut(s)	500
BstFNI	CGCG	5 cut(s)	103, 105, 314, 368, 476
BstHHI	GCGC	2 cut(s)	105, 190
BstKTI	GATC	8 cut(s)	6, 34, 111, 127, 202, 210, 222, 252
BstMBI	GATC	8 cut(s)	3, 31, 108, 124, 199, 207, 219, 249
BstMCI	CGRYCG	1 cut(s)	372
BstMWI	GCNNNNNNNGC	3 cut(s)	100, 377, 407
BstNI	CCWGG	1 cut(s)	362
BstPAI	GACNNNNGTC	1 cut(s)	432
BstPI	GGTNACC	1 cut(s)	500
BstSCI	CCNGG	1 cut(s)	360
BstUI	CGCG	5 cut(s)	103, 105, 314, 368, 476
BstV2I	GAAGAC	1 cut(s)	246
BstZI	CGGCCG	1 cut(s)	369
Bsu15I	ATCGAT	1 cut(s)	6
BsuRI	GGCC	2 cut(s)	176, 371
BsuTUI	ATCGAT	1 cut(s)	6
BtgZI	GCGATG	1 cut(s)	295
BtrI	CACGTC	1 cut(s)	244
BtuMI	TCGCGA	1 cut(s)	314
Cac8I	GCNNGC	1 cut(s)	474
CciNI	GCGGCCGC	1 cut(s)	369
CfoI	GCGC	2 cut(s)	105, 190
ClaI	ATCGAT	1 cut(s)	6
CseI	GACGC	3 cut(s)	109, 407, 422
Csp6I	GTAC	1 cut(s)	349
CviAII	CATG	2 cut(s)	35, 191
CviJI	RGCY	9 cut(s)	20, 94, 176, 298, 304, 344, 360, 371, 445
CviKI_1	RGCY	9 cut(s)	20, 94, 176, 298, 304, 344, 360, 371, 445
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	1 cut(s)	305
DpnI	GATC	8 cut(s)	5, 33, 110, 126, 201, 209, 221, 251
DpnII	GATC	8 cut(s)	3, 31, 108, 124, 199, 207, 219, 249
EaeI	YGGCCR	1 cut(s)	369
EagI	CGGCCG	1 cut(s)	369
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
EclXI	CGGCCG	1 cut(s)	369
Eco130I	CCWWGG	1 cut(s)	375
Eco52I	CGGCCG	1 cut(s)	369
Eco57I	CTGAAG	1 cut(s)	45
Eco91I	GGTNACC	1 cut(s)	500
EcoO65I	GGTNACC	1 cut(s)	500
EcoRI	GAATTC	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	360
EcoT14I	CCWWGG	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	2 cut(s)	38, 194
FaiI	YATR	6 cut(s)	36, 46, 73, 192, 212, 275
FaqI	GGGAC	3 cut(s)	105, 410, 440
FatI	CATG	2 cut(s)	34, 190
FauI	CCCGC	1 cut(s)	416
Fnu4HI	GCNGC	2 cut(s)	369, 372
Fsp4HI	GCNGC	2 cut(s)	369, 372
FspBI	CTAG	1 cut(s)	257
FspI	TGCGCA	1 cut(s)	189
GlaI	GCGC	2 cut(s)	104, 189
GluI	GCNGC	2 cut(s)	369, 372
HaeIII	GGCC	2 cut(s)	176, 371
HapII	CCGG	2 cut(s)	17, 267
HgaI	GACGC	3 cut(s)	109, 407, 422
HhaI	GCGC	2 cut(s)	105, 190
Hin1II	CATG	2 cut(s)	38, 194
Hin6I	GCGC	2 cut(s)	103, 188
HinP1I	GCGC	2 cut(s)	103, 188
HinfI	GANTC	6 cut(s)	8, 160, 229, 270, 321, 459
HpaII	CCGG	2 cut(s)	17, 267
HphI	GGTGA	3 cut(s)	49, 259, 512
Hpy188I	TCNGA	3 cut(s)	204, 238, 464
Hpy188III	TCNNGA	6 cut(s)	23, 97, 122, 133, 157, 313
HpyAV	CCTTC	4 cut(s)	187, 190, 288, 503
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4IV	ACGT	2 cut(s)	215, 243
HpyCH4V	TGCA	1 cut(s)	75
HpyF10VI	GCNNNNNNNGC	3 cut(s)	100, 377, 407
HpyF3I	CTNAG	1 cut(s)	305
HpySE526I	ACGT	2 cut(s)	215, 243
Hsp92II	CATG	2 cut(s)	38, 194
HspAI	GCGC	2 cut(s)	103, 188
Kzo9I	GATC	8 cut(s)	3, 31, 108, 124, 199, 207, 219, 249
LmnI	GCTCC	2 cut(s)	25, 442
LpnPI	CCDG	9 cut(s)	30, 36, 130, 146, 158, 280, 337, 347, 374
LweI	GCATC	1 cut(s)	318
MaeI	CTAG	1 cut(s)	257
MaeII	ACGT	2 cut(s)	215, 243
MaeIII	GTNAC	2 cut(s)	259, 500
MalI	GATC	8 cut(s)	5, 33, 110, 126, 201, 209, 221, 251
MboI	GATC	8 cut(s)	3, 31, 108, 124, 199, 207, 219, 249
MboII	GAAGA	2 cut(s)	251, 328
MluCI	AATT	3 cut(s)	85, 283, 448
MluI	ACGCGT	1 cut(s)	474
MlyI	GAGTC	2 cut(s)	223, 279
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	2 cut(s)	164, 198
MroXI	GAANNNNTTC	1 cut(s)	320
MspA1I	CMGCKG	1 cut(s)	423
MspI	CCGG	2 cut(s)	17, 267
MspR9I	CCNGG	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	362
MvnI	CGCG	5 cut(s)	103, 105, 314, 368, 476
MwoI	GCNNNNNNNGC	3 cut(s)	100, 377, 407
NdeII	GATC	8 cut(s)	3, 31, 108, 124, 199, 207, 219, 249
NlaIII	CATG	2 cut(s)	38, 194
NlaIV	GGNNCC	2 cut(s)	21, 444
NmeAIII	GCCGAG	1 cut(s)	370
NmuCI	GTSAC	2 cut(s)	259, 500
NotI	GCGGCCGC	1 cut(s)	369
NruI	TCGCGA	1 cut(s)	314
NsbI	TGCGCA	1 cut(s)	189
NspV	TTCGAA	1 cut(s)	281
PcsI	WCGNNNNNNNCGW	1 cut(s)	480
PdmI	GAANNNNTTC	1 cut(s)	320
PfeI	GAWTC	4 cut(s)	8, 160, 321, 459
PkrI	GCNGC	2 cut(s)	370, 373
PleI	GAGTC	2 cut(s)	223, 278
PpsI	GAGTC	2 cut(s)	223, 278
PshAI	GACNNNNGTC	1 cut(s)	432
Psp6I	CCWGG	1 cut(s)	360
PspEI	GGTNACC	1 cut(s)	500
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	2 cut(s)	21, 444
RruI	TCGCGA	1 cut(s)	314
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
SatI	GCNGC	2 cut(s)	369, 372
Sau3AI	GATC	8 cut(s)	3, 31, 108, 124, 199, 207, 219, 249
SchI	GAGTC	2 cut(s)	223, 279
ScrFI	CCNGG	1 cut(s)	362
SetI	ASST	8 cut(s)	96, 156, 218, 246, 280, 300, 507, 514
SfaNI	GCATC	1 cut(s)	318
SfuI	TTCGAA	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SpeI	ACTAGT	1 cut(s)	256
Sse9I	AATT	3 cut(s)	85, 283, 448
SsiI	CCGC	3 cut(s)	368, 372, 423
SspMI	CTAG	1 cut(s)	257
StyD4I	CCNGG	1 cut(s)	360
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	1 cut(s)	61
TaiI	ACGT	2 cut(s)	218, 246
TaqI	TCGA	6 cut(s)	6, 30, 111, 180, 227, 281
TasI	AATT	3 cut(s)	85, 283, 448
TatI	WGTACW	1 cut(s)	348
TauI	GCSGC	2 cut(s)	371, 374
TfiI	GAWTC	4 cut(s)	8, 160, 321, 459
TseFI	GTSAC	2 cut(s)	259, 500
Tsp45I	GTSAC	2 cut(s)	259, 500
TspDTI	ATGAA	1 cut(s)	33
TspGWI	ACGGA	3 cut(s)	117, 162, 472
XapI	RAATTY	3 cut(s)	85, 283, 448
XmnI	GAANNNNTTC	1 cut(s)	320
XspI	CTAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.