Rorug06G0388200

phosphatase 2C

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
53292066 .. 53293496
1431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0388200.1

Sequence Viewer

Length: 1371 bp
ATGGATGTCTTGAGTTGGAATTGCAGGGGAATCTGCAACACAACTACTACAAGGGCGTTGAGGGATTTGATCACACAGAATCAGCCTCAGATTGTCTTTCTCTGTGAAACAAAAATCAGTACTTTGAGGGATTTCAAAGCGTTGCACAAGGATCTAGGGTTTGCGCACTCGAAGGAGGTCTTGAGCGTTGGTCAGGCGGGAGGCCTGGCGTTATTCTGGACAGAGGATGTCGATCTGCATGTGCGTACTGTCTCTGCGCATCACATCGACGCAGAAATTAGGGGTGCACCTGGTGAACCGTGGTGGAGAATAACAGGGTTCTATGGTCATGCAATGACAGGAGATCGTGGGGATTCTTGGCAGCTTCTCTGTGATTTGGCTGATTTAGATTCTCTTCCTTGGGTGATAATCGACGACTTTAATGAAATACTGAACAATAGTGAGAAGTTAGGAGGGCCTTTGCGTAGGTTTCAGGGTGCAAAGATGACCTGGTGGAATTCTGAGACTCAAATATGTTTGGATAGAGCAGTTGGTACCTCTACATGGAGTGACATCTTTGGTTATTCAAGGGTGAAGCACTTGCCACCCAGTGATTCTGACCACGCTCCCATTCTGTTACAAGCTAGTTCTGTACCTCTGCCCAAGCGTCCTAAGCGGCACAGGTTTAAATTCGAGTCCTTTTGGTTGCAGCACCAAGAGTGTGATCCTCTTGTGTTATCTAATTGGAAAGCAGAAGATGGAGGTGCTCCTATGTTTGTACTAACAAGAAAGATTATTAACACGAGATGTGCCTTGGAATCTTGGCAGCGTGATACATTTAGACTGTGTCAAAATCAGATGGTGGATATTCGGAGCAGATTTGAAGTGCTTATGAATGAGCCGATGTCTGAGGCAGTTTACAATGAGAAGAAAGTGATAATGATTTCTTTACAGGATATTCTGTCGCAGGAAGAGGCATTTTGGAAGCAACGGGCCAAGGTTACTTGGTTGCAAGAGGGTGATAGAAATTCAGGTTTCTTTCACAGGAAGGCAGCTAATCGGAAGCGCAAAAATAATTTGTTGGGACTGTTTGATCATGAGGGGCAGTGGAAAGATGATGATGAAGGTATGGAGAATATTGTGACTTCATATTTTTCAAAAATGTTTACTGCCACTGATCTTGATGTTGACGCAATTAATCTGACCTTAGCGGCAATTCAGCCGTGTGTTATTAGTGATATGAATCAAAAGCTATGTGCCCCGTATTCAGAAGAAGAGGTCAAGTGTGCTTTATTTCAGATGTACCCGACGAAATCTCCTGGCCCTGATGGTATGCCTCCATTGTTTTTTTTTTTAGTATTATTGGGAGGATATTGGGAAAGATGTTACTGA

Protein Analysis

456

Amino Acids

52.34

Weight (kDa)

5.88

Isoelectric Point (pI)

39.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 4 - 201 1.5e-10 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 165, 258
Acc65I GGTACC 1 cut(s) 533
AccB1I GGYRCC 1 cut(s) 533
AciI CCGC 3 cut(s) 197, 655, 1190
AclWI GGATC 2 cut(s) 159, 698
AcsI RAATTY 3 cut(s) 496, 668, 1006
AdeI CACNNNGTG 2 cut(s) 293, 590
AfaI GTAC 6 cut(s) 121, 247, 535, 633, 759, 1283
AfiI CCNNNNNNNGG 1 cut(s) 543
AgsI TTSAA 4 cut(s) 136, 567, 863, 1137
AjnI CCWGG 4 cut(s) 204, 289, 488, 1297
AluBI AGCT 4 cut(s) 364, 623, 1034, 1231
AluI AGCT 4 cut(s) 364, 623, 1034, 1231
Alw21I GWGCWC 2 cut(s) 289, 748
Alw26I GTCTC 2 cut(s) 256, 497
Alw44I GTGCAC 1 cut(s) 285
AlwI GGATC 2 cut(s) 159, 698
AoxI GGCC 4 cut(s) 202, 455, 972, 1300
ApaLI GTGCAC 1 cut(s) 285
ApeKI GCWGC 4 cut(s) 361, 688, 805, 1031
ApoI RAATTY 3 cut(s) 496, 668, 1006
AseI ATTAAT 1 cut(s) 1176
Asp718I GGTACC 1 cut(s) 533
AspLEI GCGC 3 cut(s) 166, 259, 1047
AspS9I GGNCC 3 cut(s) 455, 972, 1301
AsuHPI GGTGA 4 cut(s) 305, 415, 583, 1010
BaeGI GKGCMC 2 cut(s) 289, 1240
BanI GGYRCC 1 cut(s) 533
BauI CACGAG 1 cut(s) 781
Bbv12I GWGCWC 2 cut(s) 289, 748
BbvI GCAGC 4 cut(s) 373, 700, 817, 1043
BccI CCATC 3 cut(s) 731, 832, 1301
BceAI ACGGC 1 cut(s) 1186
BciT130I CCWGG 4 cut(s) 206, 291, 490, 1299
BclI TGATCA 2 cut(s) 69, 1072
BcoDI GTCTC 2 cut(s) 256, 497
BfaI CTAG 2 cut(s) 155, 624
BisI GCNGC 6 cut(s) 362, 656, 689, 806, 1032, 1191
BlsI GCNGC 6 cut(s) 363, 657, 690, 807, 1033, 1192
BmcAI AGTACT 1 cut(s) 121
Bme1390I CCNGG 4 cut(s) 206, 291, 490, 1299
BmgT120I GGNCC 3 cut(s) 455, 972, 1301
BmiI GGNNCC 1 cut(s) 535
BmrFI CCNGG 4 cut(s) 206, 291, 490, 1299
BmrI ACTGGG 1 cut(s) 582
BmsI GCATC 1 cut(s) 268
BmuI ACTGGG 1 cut(s) 582
Bpu10I CCTNAGC 2 cut(s) 651, 1186
BpuEI CTTGAG 2 cut(s) 31, 202
BsaBI GATNNNNATC 2 cut(s) 231, 1221
BsaJI CCNNGG 4 cut(s) 299, 398, 792, 975
BsaXI ACNNNNNCTCC 2 cut(s) 1279, 1309
Bsc4I CCNNNNNNNGG 1 cut(s) 543
Bse1I ACTGG 1 cut(s) 588
Bse3DI GCAATG 1 cut(s) 339
Bse8I GATNNNNATC 2 cut(s) 231, 1221
BseBI CCWGG 4 cut(s) 206, 291, 490, 1299
BseDI CCNNGG 4 cut(s) 299, 398, 792, 975
BseGI GGATG 2 cut(s) 10, 232
BseJI GATNNNNATC 2 cut(s) 231, 1221
BseLI CCNNNNNNNGG 1 cut(s) 543
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 3 cut(s) 101, 492, 879
BseNI ACTGG 1 cut(s) 588
BseSI GKGCMC 2 cut(s) 289, 1240
BseXI GCAGC 4 cut(s) 373, 700, 817, 1043
BshFI GGCC 4 cut(s) 204, 457, 974, 1302
BshNI GGYRCC 1 cut(s) 533
BsiHKAI GWGCWC 2 cut(s) 289, 748
BslFI GGGAC 1 cut(s) 1077
BslI CCNNNNNNNGG 1 cut(s) 543
BsmAI GTCTC 2 cut(s) 256, 497
BsmFI GGGAC 1 cut(s) 1077
BsnI GGCC 4 cut(s) 204, 457, 974, 1302
Bsp1286I GDGCHC 3 cut(s) 289, 748, 1240
Bsp143I GATC 7 cut(s) 69, 151, 232, 343, 703, 1072, 1156
BspACI CCGC 3 cut(s) 197, 655, 1190
BspANI GGCC 4 cut(s) 204, 457, 974, 1302
BspCNI CTCAG 3 cut(s) 100, 493, 880
BspHI TCATGA 1 cut(s) 1075
BspLI GGNNCC 1 cut(s) 535
BspPI GGATC 2 cut(s) 159, 698
BspT107I GGYRCC 1 cut(s) 533
BsrDI GCAATG 1 cut(s) 339
BsrI ACTGG 1 cut(s) 588
BssECI CCNNGG 4 cut(s) 299, 398, 792, 975
BssMI GATC 7 cut(s) 69, 151, 232, 343, 703, 1072, 1156
BssSI CACGAG 1 cut(s) 781
BssT1I CCWWGG 3 cut(s) 398, 792, 975
Bst2BI CACGAG 1 cut(s) 781
Bst2UI CCWGG 4 cut(s) 206, 291, 490, 1299
Bst4CI ACNGT 4 cut(s) 250, 300, 825, 1068
Bst6I CTCTTC 3 cut(s) 399, 945, 1248
BstDEI CTNAG 5 cut(s) 87, 501, 651, 888, 1186
BstDSI CCRYGG 1 cut(s) 299
BstF5I GGATG 2 cut(s) 10, 232
BstHHI GCGC 3 cut(s) 166, 259, 1047
BstKTI GATC 7 cut(s) 72, 154, 235, 346, 706, 1075, 1159
BstMAI GTCTC 2 cut(s) 256, 497
BstMBI GATC 7 cut(s) 69, 151, 232, 343, 703, 1072, 1156
BstMWI GCNNNNNNNGC 1 cut(s) 652
BstNI CCWGG 4 cut(s) 206, 291, 490, 1299
BstNSI RCATGY 1 cut(s) 242
BstSCI CCNGG 4 cut(s) 204, 289, 488, 1297
BstSLI GKGCMC 2 cut(s) 289, 1240
BstV1I GCAGC 4 cut(s) 373, 700, 817, 1043
BstX2I RGATCY 1 cut(s) 151
BstYI RGATCY 1 cut(s) 151
BsuRI GGCC 4 cut(s) 204, 457, 974, 1302
BtgI CCRYGG 1 cut(s) 299
BtsCI GGATG 2 cut(s) 10, 232
BtsI GCAGTG 1 cut(s) 1091
BtsIMutI CAGTG 3 cut(s) 595, 1091, 1152
CciI TCATGA 1 cut(s) 1075
CfoI GCGC 3 cut(s) 166, 259, 1047
Cfr13I GGNCC 3 cut(s) 455, 972, 1301
CseI GACGC 3 cut(s) 278, 635, 1178
CsiI ACCWGGT 2 cut(s) 289, 488
Csp6I GTAC 6 cut(s) 120, 246, 534, 632, 758, 1282
CspCI CAANNNNNGTGG 2 cut(s) 1141, 1176
CviAII CATG 4 cut(s) 239, 329, 543, 1076
CviQI GTAC 6 cut(s) 120, 246, 534, 632, 758, 1282
DdeI CTNAG 5 cut(s) 87, 501, 651, 888, 1186
DpnI GATC 7 cut(s) 71, 153, 234, 345, 705, 1074, 1158
DpnII GATC 7 cut(s) 69, 151, 232, 343, 703, 1072, 1156
DraI TTTAAA 1 cut(s) 667
DraIII CACNNNGTG 2 cut(s) 293, 590
Eam1104I CTCTTC 3 cut(s) 399, 945, 1248
EarI CTCTTC 3 cut(s) 399, 945, 1248
Eco130I CCWWGG 3 cut(s) 398, 792, 975
Eco147I AGGCCT 1 cut(s) 204
EcoO109I RGGNCCY 1 cut(s) 455
EcoRI GAATTC 1 cut(s) 496
EcoRII CCWGG 4 cut(s) 204, 289, 488, 1297
EcoT14I CCWWGG 3 cut(s) 398, 792, 975
ErhI CCWWGG 3 cut(s) 398, 792, 975
FaeI CATG 4 cut(s) 242, 332, 546, 1079
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FaqI GGGAC 1 cut(s) 1077
FatI CATG 4 cut(s) 238, 328, 542, 1075
FauI CCCGC 1 cut(s) 190
FbaI TGATCA 2 cut(s) 69, 1072
Fnu4HI GCNGC 6 cut(s) 362, 656, 689, 806, 1032, 1191
FokI GGATG 2 cut(s) 17, 239
Fsp4HI GCNGC 6 cut(s) 362, 656, 689, 806, 1032, 1191
FspBI CTAG 2 cut(s) 155, 624
FspI TGCGCA 2 cut(s) 165, 258
GlaI GCGC 3 cut(s) 165, 258, 1046
GluI GCNGC 6 cut(s) 362, 656, 689, 806, 1032, 1191
HaeIII GGCC 4 cut(s) 204, 457, 974, 1302
HgaI GACGC 3 cut(s) 278, 635, 1178
HhaI GCGC 3 cut(s) 166, 259, 1047
Hin1II CATG 4 cut(s) 242, 332, 546, 1079
Hin6I GCGC 3 cut(s) 164, 257, 1045
HinP1I GCGC 3 cut(s) 164, 257, 1045
HincII GTYRAC 1 cut(s) 1168
HindII GTYRAC 1 cut(s) 1168
HinfI GANTC 9 cut(s) 30, 79, 353, 389, 505, 593, 674, 797, 1222
HphI GGTGA 4 cut(s) 305, 415, 583, 1010
Hpy166II GTNNAC 5 cut(s) 287, 296, 898, 1146, 1168
Hpy188III TCNNGA 5 cut(s) 10, 181, 217, 1076, 1160
Hpy8I GTNNAC 5 cut(s) 287, 296, 898, 1146, 1168
Hpy99I CGWCG 3 cut(s) 272, 416, 1291
HpyAV CCTTC 3 cut(s) 166, 1021, 1097
HpyCH4III ACNGT 4 cut(s) 250, 300, 825, 1068
HpyCH4V TGCA 9 cut(s) 24, 36, 145, 238, 287, 332, 479, 688, 991
HpyF10VI GCNNNNNNNGC 1 cut(s) 652
HpyF3I CTNAG 5 cut(s) 87, 501, 651, 888, 1186
Hsp92II CATG 4 cut(s) 242, 332, 546, 1079
HspAI GCGC 3 cut(s) 164, 257, 1045
KpnI GGTACC 1 cut(s) 537
Ksp22I TGATCA 2 cut(s) 69, 1072
Kzo9I GATC 7 cut(s) 69, 151, 232, 343, 703, 1072, 1156
LmnI GCTCC 3 cut(s) 610, 751, 852
Lsp1109I GCAGC 4 cut(s) 373, 700, 817, 1043
LweI GCATC 1 cut(s) 268
MabI ACCWGGT 2 cut(s) 289, 488
MaeI CTAG 2 cut(s) 155, 624
MaeIII GTNAC 5 cut(s) 548, 615, 979, 1120, 1364
MalI GATC 7 cut(s) 71, 153, 234, 345, 705, 1074, 1158
MboI GATC 7 cut(s) 69, 151, 232, 343, 703, 1072, 1156
MboII GAAGA 6 cut(s) 386, 746, 919, 962, 1262, 1265
MflI RGATCY 1 cut(s) 151
MhlI GDGCHC 3 cut(s) 289, 748, 1240
MluCI AATT 9 cut(s) 19, 276, 496, 668, 721, 1006, 1054, 1173, 1194
MlyI GAGTC 2 cut(s) 499, 683
MseI TTAA 4 cut(s) 420, 666, 777, 1176
MspR9I CCNGG 4 cut(s) 206, 291, 490, 1299
MvaI CCWGG 4 cut(s) 206, 291, 490, 1299
MwoI GCNNNNNNNGC 1 cut(s) 652
NdeII GATC 7 cut(s) 69, 151, 232, 343, 703, 1072, 1156
NlaIII CATG 4 cut(s) 242, 332, 546, 1079
NlaIV GGNNCC 1 cut(s) 535
NmuCI GTSAC 2 cut(s) 548, 1120
NsbI TGCGCA 2 cut(s) 165, 258
NspI RCATGY 1 cut(s) 242
PagI TCATGA 1 cut(s) 1075
PceI AGGCCT 1 cut(s) 204
PfeI GAWTC 7 cut(s) 30, 79, 353, 389, 593, 797, 1222
PflFI GACNNNGTC 1 cut(s) 825
PkrI GCNGC 6 cut(s) 363, 657, 690, 807, 1033, 1192
PleI GAGTC 2 cut(s) 499, 682
PpsI GAGTC 2 cut(s) 499, 682
PshBI ATTAAT 1 cut(s) 1176
Psp6I CCWGG 4 cut(s) 204, 289, 488, 1297
PspGI CCWGG 4 cut(s) 204, 289, 488, 1297
PspN4I GGNNCC 1 cut(s) 535
PspPI GGNCC 3 cut(s) 455, 972, 1301
PsuI RGATCY 1 cut(s) 151
PsyI GACNNNGTC 1 cut(s) 825
RsaI GTAC 6 cut(s) 121, 247, 535, 633, 759, 1283
RsaNI GTAC 6 cut(s) 120, 246, 534, 632, 758, 1282
SaqAI TTAA 4 cut(s) 420, 666, 777, 1176
SatI GCNGC 6 cut(s) 362, 656, 689, 806, 1032, 1191
Sau3AI GATC 7 cut(s) 69, 151, 232, 343, 703, 1072, 1156
Sau96I GGNCC 3 cut(s) 455, 972, 1301
ScaI AGTACT 1 cut(s) 121
SchI GAGTC 2 cut(s) 499, 683
ScrFI CCNGG 4 cut(s) 206, 291, 490, 1299
SduI GDGCHC 3 cut(s) 289, 748, 1240
SexAI ACCWGGT 2 cut(s) 289, 488
SfaNI GCATC 1 cut(s) 268
SmlI CTYRAG 2 cut(s) 10, 181
SmoI CTYRAG 2 cut(s) 10, 181
Sse9I AATT 9 cut(s) 19, 276, 496, 668, 721, 1006, 1054, 1173, 1194
SseBI AGGCCT 1 cut(s) 204
SsiI CCGC 3 cut(s) 197, 655, 1190
SspI AATATT 1 cut(s) 1117
SspMI CTAG 2 cut(s) 155, 624
StuI AGGCCT 1 cut(s) 204
StyD4I CCNGG 4 cut(s) 204, 289, 488, 1297
StyI CCWWGG 3 cut(s) 398, 792, 975
TaaI ACNGT 4 cut(s) 250, 300, 825, 1068
TaqI TCGA 5 cut(s) 170, 231, 267, 411, 672
TasI AATT 9 cut(s) 19, 276, 496, 668, 721, 1006, 1054, 1173, 1194
TatI WGTACW 2 cut(s) 119, 757
TauI GCSGC 2 cut(s) 658, 1193
TfiI GAWTC 7 cut(s) 30, 79, 353, 389, 593, 797, 1222
Tru1I TTAA 4 cut(s) 420, 666, 777, 1176
Tru9I TTAA 4 cut(s) 420, 666, 777, 1176
TscAI CASTG 3 cut(s) 595, 1091, 1159
TseFI GTSAC 2 cut(s) 548, 1120
TseI GCWGC 4 cut(s) 361, 688, 805, 1031
Tsp45I GTSAC 2 cut(s) 548, 1120
TspDTI ATGAA 5 cut(s) 438, 887, 1116, 1116, 1235
TspRI CASTG 3 cut(s) 595, 1091, 1159
Tth111I GACNNNGTC 1 cut(s) 825
VneI GTGCAC 1 cut(s) 285
VspI ATTAAT 1 cut(s) 1176
XapI RAATTY 3 cut(s) 496, 668, 1006
XceI RCATGY 1 cut(s) 242
XspI CTAG 2 cut(s) 155, 624
ZrmI AGTACT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.