Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004324

Physical Location & Seq

Genomic Coordinates Reverse (-)

6618326 .. 6619537

Gene Structure 1212 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGAAAATAGCCCACAACTGGAATTTGAAAGTTGGGAAATCAGACAAACCTCATCAACCGCCGGAGGCAATCAGCTCCGAAAATACATGTTCCCATTGGCTAATGATGCACAGGCAGAGCATTCTTTACGGCAAGGCCAAAGCCTCATTCAACTTTGTCACAAAACCAAACACAAAACTCGGTTCAACGAGTCCCTCCCAAGTTAAATCACGTCTTCTGAGAACCAGAAATCCATCAACCATCATCAAAACTACAGCGCTGGAAGTTTCGGGATTCCGCGGCGCATTCAGGCACGTAGAGGCCCGAGTGGCGACGGGAAACCTAGGAGAATTGTCCGAAGAGGACGACGACGACGTGTGTCCCGTTGAATGTGTTAGAGAGTTTAGGACTGACGCGGAGTTCAGCAAAATTCTTGAAAGGGCTAGAGAAAGTGGTGCTCTAGTTGTCGTGGATTTTTATCGGACTTCGTGTGGGAGCTGCAAGTACATAGAGCAAGGGTTTGCAAAGTTGTGCAAGGGAGCTGGCGATGGAGAAGCTGCTGTTATCTTCTTAAAGCATAATGTAATTGATGAGTACGATGAACAATCCGAGGTTGCTGATCGACTTAGAATTAAGACGGTGCCCCTCTTCCACTTCTATAAAGACGGAGTCCTCTTGGAAGCATTCCCTACCAGAGACAAAGAGAGGATCACTGCGGCCATTAGTAAATACACAACTCCAGCTTCTCAAGAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

246

Amino Acids

27.42

Weight (kDa)

8.16

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	130 - 234	2.8e-11	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07700 AT1G07700 AT1G07700 AT1G07700
fragaria_vesca	FvH4_2g34430 FvH4_2g34430 FvH4_2g34430
malus_domestica	MD08G1101500.v1.1 MD15G1082700.v1.1
prunus_persica	Prupe.1G435400_v2.0.a1 Prupe.1G435400_v2.0.a1 Prupe.1G435400_v2.0.a1
pyrus_communis	pycom08g08200 pycom15g07750
rosa_chinensis	RchiOBHm_Chr2g0138871 RchiOBHm_Chr6g0307941
rosa_laevigata	RLG00000010685
rosa_multiflora	Rmu_co8456761.1_g000001 Rmu_sc0003252.1_g000021
rosa_roxburghii	Rroxscaffold_7G00160750
rosa_rugosa	Rorug06G0362000 Rorug06G0362000
rosa_samantha	Rh2AG402600 Rh2CG388700 Rh2DG422900 Rh6AG470900 Rh6BG481900 Rh6CG487300 Rh6DG473400
rosa_wichuraiana	Rw2G032760 Rw6G002000 Rw6G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	619
AccII	CGCG	2 cut(s)	279, 395
AciI	CCGC	5 cut(s)	59, 277, 279, 395, 695
AclWI	GGATC	1 cut(s)	695
AcoI	YGGCCR	1 cut(s)	696
AcsI	RAATTY	2 cut(s)	22, 408
AfaI	GTAC	2 cut(s)	485, 575
AfeI	AGCGCT	1 cut(s)	258
AfiI	CCNNNNNNNGG	1 cut(s)	18
AflIII	ACRYGT	2 cut(s)	86, 354
AgsI	TTSAA	5 cut(s)	28, 151, 186, 368, 416
AjiI	CACGTC	2 cut(s)	212, 355
AjuI	GAANNNNNNNTTGG	2 cut(s)	131, 163
AloI	GAACNNNNNNTCC	2 cut(s)	214, 246
AluBI	AGCT	5 cut(s)	75, 477, 521, 536, 722
AluI	AGCT	5 cut(s)	75, 477, 521, 536, 722
Alw21I	GWGCWC	1 cut(s)	439
Alw26I	GTCTC	1 cut(s)	669
AlwI	GGATC	1 cut(s)	695
Ama87I	CYCGRG	1 cut(s)	303
Aor51HI	AGCGCT	1 cut(s)	258
AoxI	GGCC	3 cut(s)	135, 300, 696
ApeKI	GCWGC	2 cut(s)	477, 536
ApoI	RAATTY	2 cut(s)	22, 408
AspA2I	CCTAGG	1 cut(s)	322
AspLEI	GCGC	2 cut(s)	259, 284
AspS9I	GGNCC	1 cut(s)	301
AvaI	CYCGRG	1 cut(s)	303
AvrII	CCTAGG	1 cut(s)	322
BaeGI	GKGCMC	1 cut(s)	624
BanI	GGYRCC	1 cut(s)	619
BbsI	GAAGAC	1 cut(s)	206
Bbv12I	GWGCWC	1 cut(s)	439
BbvI	GCAGC	2 cut(s)	464, 523
BccI	CCATC	3 cut(s)	241, 248, 521
BceAI	ACGGC	1 cut(s)	145
BcoDI	GTCTC	1 cut(s)	669
BfaI	CTAG	3 cut(s)	323, 423, 440
BfmI	CTRYAG	1 cut(s)	252
BfoI	RGCGCY	1 cut(s)	260
BglI	GCCNNNNNGGC	1 cut(s)	308
BisI	GCNGC	4 cut(s)	280, 478, 537, 696
BlnI	CCTAGG	1 cut(s)	322
BlsI	GCNGC	4 cut(s)	281, 479, 538, 697
BmeT110I	CYCGRG	1 cut(s)	303
BmgBI	CACGTC	2 cut(s)	212, 355
BmgT120I	GGNCC	1 cut(s)	301
BmiI	GGNNCC	1 cut(s)	621
BmsI	GCATC	1 cut(s)	96
BoxI	GACNNNNGTC	1 cut(s)	357
BpiI	GAAGAC	1 cut(s)	206
BpmI	CTGGAG	1 cut(s)	702
BpuEI	CTTGAG	1 cut(s)	711
BsaAI	YACGTR	1 cut(s)	295
BsaBI	GATNNNNATC	1 cut(s)	456
BsaJI	CCNNGG	3 cut(s)	277, 322, 588
Bsc4I	CCNNNNNNNGG	1 cut(s)	18
Bse1I	ACTGG	1 cut(s)	23
Bse8I	GATNNNNATC	1 cut(s)	456
BseDI	CCNNGG	3 cut(s)	277, 322, 588
BseJI	GATNNNNATC	1 cut(s)	456
BseLI	CCNNNNNNNGG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	209
BseNI	ACTGG	1 cut(s)	23
BseSI	GKGCMC	1 cut(s)	624
BseXI	GCAGC	2 cut(s)	464, 523
Bsh1236I	CGCG	2 cut(s)	279, 395
BshFI	GGCC	3 cut(s)	137, 302, 698
BshNI	GGYRCC	1 cut(s)	619
BsiHKAI	GWGCWC	1 cut(s)	439
BsiHKCI	CYCGRG	1 cut(s)	303
BsiSI	CCGG	1 cut(s)	62
BslFI	GGGAC	2 cut(s)	177, 345
BslI	CCNNNNNNNGG	1 cut(s)	18
BsmAI	GTCTC	1 cut(s)	669
BsmFI	GGGAC	2 cut(s)	177, 345
BsmI	GAATGC	3 cut(s)	120, 284, 662
BsnI	GGCC	3 cut(s)	137, 302, 698
BsoBI	CYCGRG	1 cut(s)	303
Bsp1286I	GDGCHC	2 cut(s)	439, 624
Bsp143I	GATC	2 cut(s)	598, 687
BspACI	CCGC	5 cut(s)	59, 277, 279, 395, 695
BspANI	GGCC	3 cut(s)	137, 302, 698
BspCNI	CTCAG	1 cut(s)	210
BspFNI	CGCG	2 cut(s)	279, 395
BspLI	GGNNCC	1 cut(s)	621
BspPI	GGATC	1 cut(s)	695
BspT107I	GGYRCC	1 cut(s)	619
BsrI	ACTGG	1 cut(s)	23
BssECI	CCNNGG	3 cut(s)	277, 322, 588
BssMI	GATC	2 cut(s)	598, 687
BssT1I	CCWWGG	1 cut(s)	322
Bst4CI	ACNGT	1 cut(s)	619
Bst6I	CTCTTC	2 cut(s)	333, 632
BstBAI	YACGTR	1 cut(s)	295
BstC8I	GCNNGC	1 cut(s)	523
BstDEI	CTNAG	2 cut(s)	218, 605
BstDSI	CCRYGG	1 cut(s)	277
BstFNI	CGCG	2 cut(s)	279, 395
BstH2I	RGCGCY	1 cut(s)	260
BstHHI	GCGC	2 cut(s)	259, 284
BstKTI	GATC	2 cut(s)	601, 690
BstMAI	GTCTC	1 cut(s)	669
BstMBI	GATC	2 cut(s)	598, 687
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 308
BstNSI	RCATGY	1 cut(s)	90
BstPAI	GACNNNNGTC	1 cut(s)	357
BstSFI	CTRYAG	1 cut(s)	252
BstSLI	GKGCMC	1 cut(s)	624
BstUI	CGCG	2 cut(s)	279, 395
BstV1I	GCAGC	2 cut(s)	464, 523
BstV2I	GAAGAC	1 cut(s)	206
BsuRI	GGCC	3 cut(s)	137, 302, 698
BtgI	CCRYGG	1 cut(s)	277
BtgZI	GCGATG	1 cut(s)	540
BtrI	CACGTC	2 cut(s)	212, 355
BtsI	GCAGTG	1 cut(s)	690
BtsIMutI	CAGTG	1 cut(s)	690
Cac8I	GCNNGC	1 cut(s)	523
CfoI	GCGC	2 cut(s)	259, 284
Cfr13I	GGNCC	1 cut(s)	301
Cfr42I	CCGCGG	1 cut(s)	280
CseI	GACGC	1 cut(s)	401
Csp6I	GTAC	2 cut(s)	484, 574
CviAII	CATG	1 cut(s)	87
CviQI	GTAC	2 cut(s)	484, 574
DdeI	CTNAG	2 cut(s)	218, 605
DpnI	GATC	2 cut(s)	600, 689
DpnII	GATC	2 cut(s)	598, 687
EaeI	YGGCCR	1 cut(s)	696
Eam1104I	CTCTTC	2 cut(s)	333, 632
EarI	CTCTTC	2 cut(s)	333, 632
Eco130I	CCWWGG	1 cut(s)	322
Eco47III	AGCGCT	1 cut(s)	258
Eco88I	CYCGRG	1 cut(s)	303
EcoT14I	CCWWGG	1 cut(s)	322
ErhI	CCWWGG	1 cut(s)	322
FaeI	CATG	1 cut(s)	90
FaiI	YATR	4 cut(s)	88, 488, 558, 639
FaqI	GGGAC	2 cut(s)	177, 345
FatI	CATG	1 cut(s)	86
Fnu4HI	GCNGC	4 cut(s)	280, 478, 537, 696
Fsp4HI	GCNGC	4 cut(s)	280, 478, 537, 696
FspBI	CTAG	3 cut(s)	323, 423, 440
GlaI	GCGC	2 cut(s)	258, 283
GluI	GCNGC	4 cut(s)	280, 478, 537, 696
GsuI	CTGGAG	1 cut(s)	702
HaeII	RGCGCY	1 cut(s)	260
HaeIII	GGCC	3 cut(s)	137, 302, 698
HapII	CCGG	1 cut(s)	62
HgaI	GACGC	1 cut(s)	401
HhaI	GCGC	2 cut(s)	259, 284
Hin1II	CATG	1 cut(s)	90
Hin6I	GCGC	2 cut(s)	257, 282
HinP1I	GCGC	2 cut(s)	257, 282
HinfI	GANTC	3 cut(s)	190, 273, 648
HpaII	CCGG	1 cut(s)	62
Hpy188I	TCNGA	6 cut(s)	43, 79, 219, 337, 462, 589
Hpy188III	TCNNGA	3 cut(s)	270, 413, 728
Hpy99I	CGWCG	4 cut(s)	316, 350, 353, 356
HpyCH4III	ACNGT	1 cut(s)	619
HpyCH4IV	ACGT	3 cut(s)	211, 294, 354
HpyCH4V	TGCA	4 cut(s)	109, 480, 503, 513
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 308
HpyF3I	CTNAG	2 cut(s)	218, 605
HpySE526I	ACGT	3 cut(s)	211, 294, 354
Hsp92II	CATG	1 cut(s)	90
HspAI	GCGC	2 cut(s)	257, 282
KspI	CCGCGG	1 cut(s)	280
Kzo9I	GATC	2 cut(s)	598, 687
LmnI	GCTCC	3 cut(s)	80, 474, 518
LpnPI	CCDG	9 cut(s)	4, 75, 97, 238, 245, 274, 507, 685, 732
Lsp1109I	GCAGC	2 cut(s)	464, 523
LweI	GCATC	1 cut(s)	96
MaeI	CTAG	3 cut(s)	323, 423, 440
MaeII	ACGT	3 cut(s)	211, 294, 354
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	2 cut(s)	600, 689
MboI	GATC	2 cut(s)	598, 687
MboII	GAAGA	4 cut(s)	206, 350, 538, 619
MhlI	GDGCHC	2 cut(s)	439, 624
MluCI	AATT	5 cut(s)	22, 329, 408, 564, 609
MlyI	GAGTC	2 cut(s)	199, 657
MseI	TTAA	3 cut(s)	204, 551, 612
MspA1I	CMGCKG	1 cut(s)	279
MspI	CCGG	1 cut(s)	62
Mva1269I	GAATGC	3 cut(s)	120, 284, 662
MvnI	CGCG	2 cut(s)	279, 395
MwoI	GCNNNNNNNGC	2 cut(s)	106, 308
NdeII	GATC	2 cut(s)	598, 687
NlaIII	CATG	1 cut(s)	90
NlaIV	GGNNCC	1 cut(s)	621
NmuCI	GTSAC	1 cut(s)	157
NspI	RCATGY	1 cut(s)	90
PciI	ACATGT	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	2 cut(s)	351, 360
PctI	GAATGC	3 cut(s)	120, 284, 662
PfeI	GAWTC	1 cut(s)	273
PflFI	GACNNNGTC	1 cut(s)	647
PkrI	GCNGC	4 cut(s)	281, 479, 538, 697
PleI	GAGTC	2 cut(s)	198, 656
PpsI	GAGTC	2 cut(s)	198, 656
Ppu21I	YACGTR	1 cut(s)	295
PscI	ACATGT	1 cut(s)	86
PshAI	GACNNNNGTC	1 cut(s)	357
PspN4I	GGNNCC	1 cut(s)	621
PspPI	GGNCC	1 cut(s)	301
PsyI	GACNNNGTC	1 cut(s)	647
RsaI	GTAC	2 cut(s)	485, 575
RsaNI	GTAC	2 cut(s)	484, 574
SacII	CCGCGG	1 cut(s)	280
SaqAI	TTAA	3 cut(s)	204, 551, 612
SatI	GCNGC	4 cut(s)	280, 478, 537, 696
Sau3AI	GATC	2 cut(s)	598, 687
Sau96I	GGNCC	1 cut(s)	301
SchI	GAGTC	2 cut(s)	199, 657
SduI	GDGCHC	2 cut(s)	439, 624
SfaNI	GCATC	1 cut(s)	96
SfcI	CTRYAG	1 cut(s)	252
Sfr303I	CCGCGG	1 cut(s)	280
SgrBI	CCGCGG	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	726
SmoI	CTYRAG	1 cut(s)	726
Sse9I	AATT	5 cut(s)	22, 329, 408, 564, 609
SsiI	CCGC	5 cut(s)	59, 277, 279, 395, 695
SspMI	CTAG	3 cut(s)	323, 423, 440
StyI	CCWWGG	1 cut(s)	322
TaaI	ACNGT	1 cut(s)	619
TaiI	ACGT	3 cut(s)	214, 297, 357
TaqI	TCGA	1 cut(s)	601
TasI	AATT	5 cut(s)	22, 329, 408, 564, 609
TatI	WGTACW	1 cut(s)	483
TauI	GCSGC	2 cut(s)	282, 698
TfiI	GAWTC	1 cut(s)	273
Tru1I	TTAA	3 cut(s)	204, 551, 612
Tru9I	TTAA	3 cut(s)	204, 551, 612
TscAI	CASTG	1 cut(s)	697
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	2 cut(s)	477, 536
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	2 cut(s)	17, 594
TspGWI	ACGGA	1 cut(s)	660
TspRI	CASTG	1 cut(s)	697
Tth111I	GACNNNGTC	1 cut(s)	647
XapI	RAATTY	2 cut(s)	22, 408
XceI	RCATGY	1 cut(s)	90
XmaJI	CCTAGG	1 cut(s)	322
XspI	CTAG	3 cut(s)	323, 423, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.