Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0006181

Physical Location & Seq

Genomic Coordinates Forward (+)

7337549 .. 7338272

Gene Structure 724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAAATGCGCCAATGAAGAAACAAAACCACTGAAATGTGTTACTCTGGTTGGTCAGGTTCGGGAAGCTATGCGTCGCATACGTATTCATAATCTTTGGATCAGCCTCTGCATTATCTGCATCATCATCACCTGCTCAAATTCAAGCGAGGCGAACGCGACAGACATCAAAGTTTTGAAGGTTGGTGAAGAGCTGTGGAGAGAGACTCTACCGCTGCATTCGGGTTCATGCCTTTACCGGCTTCATGGACTCAAGCCTTATACTTGGTATGAAGTGAAGATATCATATCCTGCTTCTATACCGGCTAGCTTTTCCTTGCAACTCAAGAAAGGGGACTTGGAATCGGCACTGACTGGGAACCGAAGATTACTAAATACTGAAAAGCTTATTTTCAAGACTGAGAGTCTTGGCTCTGATCGATCAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

16.01

Weight (kDa)

9.1

Isoelectric Point (pI)

31.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20890 AT1G20890 AT1G76480 AT1G76480
fragaria_vesca	FvH4_2g35150 FvH4_2g35150 FvH4_2g35150 FvH4_2g35150 FvH4_2g35150 FvH4_2g35150
malus_domestica	MD08G1109000.v1.1
prunus_persica	Prupe.1G443600_v2.0.a1 Prupe.1G443800_v2.0.a1
pyrus_communis	pycom08g09080
rosa_chinensis	RchiOBHm_Chr6g0306801
rosa_laevigata	RLG00000010765
rosa_multiflora	Rmu_sc0009381.1_g000002
rosa_rugosa	Rorug06G0353000 Rorug06G0353100 Rorug06G0353100 Rorug06G0353100
rosa_samantha	Rh6AG464800 Rh6AG464900 Rh6BG435900 Rh6CG479300 Rh6DG466200
rosa_wichuraiana	Rw6G040510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	140
Acc36I	ACCTGC	1 cut(s)	140
AccII	CGCG	1 cut(s)	158
AciI	CCGC	1 cut(s)	212
AclWI	GGATC	1 cut(s)	107
AcsI	RAATTY	1 cut(s)	139
AgsI	TTSAA	3 cut(s)	144, 178, 394
AhdI	GACNNNNNGTC	1 cut(s)	402
AjuI	GAANNNNNNNTTGG	2 cut(s)	320, 352
AluBI	AGCT	4 cut(s)	68, 193, 309, 385
AluI	AGCT	4 cut(s)	68, 193, 309, 385
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	1 cut(s)	107
AlwNI	CAGNNNCTG	1 cut(s)	108
ApeKI	GCWGC	1 cut(s)	214
ApoI	RAATTY	1 cut(s)	139
AspLEI	GCGC	1 cut(s)	11
AsuHPI	GGTGA	2 cut(s)	121, 197
AsuNHI	GCTAGC	1 cut(s)	305
BbvI	GCAGC	1 cut(s)	201
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	1 cut(s)	306
BfuAI	ACCTGC	1 cut(s)	140
BisI	GCNGC	1 cut(s)	215
BlsI	GCNGC	1 cut(s)	216
BmeRI	GACNNNNNGTC	1 cut(s)	402
BmiI	GGNNCC	1 cut(s)	359
BmrI	ACTGGG	1 cut(s)	363
BmsI	GCATC	1 cut(s)	129
BmtI	GCTAGC	1 cut(s)	309
BmuI	ACTGGG	1 cut(s)	363
BplI	GAGNNNNNCTC	2 cut(s)	190, 222
BpuEI	CTTGAG	2 cut(s)	236, 308
Bsa29I	ATCGAT	1 cut(s)	418
BsaAI	YACGTR	1 cut(s)	83
Bse118I	RCCGGY	2 cut(s)	237, 301
Bse1I	ACTGG	1 cut(s)	358
BseCI	ATCGAT	1 cut(s)	418
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	1 cut(s)	358
BseXI	GCAGC	1 cut(s)	201
Bsh1236I	CGCG	1 cut(s)	158
BshVI	ATCGAT	1 cut(s)	418
BsiSI	CCGG	2 cut(s)	238, 302
BslFI	GGGAC	1 cut(s)	347
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	347
BsmI	GAATGC	1 cut(s)	217
Bsp143I	GATC	3 cut(s)	99, 415, 419
BspACI	CCGC	1 cut(s)	212
BspCNI	CTCAG	1 cut(s)	391
BspDI	ATCGAT	1 cut(s)	418
BspFNI	CGCG	1 cut(s)	158
BspLI	GGNNCC	1 cut(s)	359
BspMI	ACCTGC	1 cut(s)	140
BspOI	GCTAGC	1 cut(s)	309
BspPI	GGATC	1 cut(s)	107
BspQI	GCTCTTC	1 cut(s)	183
BsrFI	RCCGGY	2 cut(s)	237, 301
BsrI	ACTGG	1 cut(s)	358
BssAI	RCCGGY	2 cut(s)	237, 301
BssMI	GATC	3 cut(s)	99, 415, 419
Bst6I	CTCTTC	1 cut(s)	183
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstBAI	YACGTR	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	307
BstDEI	CTNAG	1 cut(s)	399
BstFNI	CGCG	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	3 cut(s)	102, 418, 422
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	3 cut(s)	99, 415, 419
BstMWI	GCNNNNNNNGC	1 cut(s)	117
BstSNI	TACGTA	1 cut(s)	83
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	1 cut(s)	201
Bsu15I	ATCGAT	1 cut(s)	418
BsuTUI	ATCGAT	1 cut(s)	418
BtsIMutI	CAGTG	2 cut(s)	29, 347
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	1 cut(s)	307
CaiI	CAGNNNCTG	1 cut(s)	108
CfoI	GCGC	1 cut(s)	11
Cfr10I	RCCGGY	2 cut(s)	237, 301
ClaI	ATCGAT	1 cut(s)	418
CseI	GACGC	1 cut(s)	62
CviAII	CATG	2 cut(s)	228, 245
CviJI	RGCY	9 cut(s)	68, 105, 193, 241, 256, 305, 309, 385, 411
CviKI_1	RGCY	9 cut(s)	68, 105, 193, 241, 256, 305, 309, 385, 411
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	3 cut(s)	101, 417, 421
DpnII	GATC	3 cut(s)	99, 415, 419
DriI	GACNNNNNGTC	1 cut(s)	402
Eam1104I	CTCTTC	1 cut(s)	183
Eam1105I	GACNNNNNGTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	183
Eco105I	TACGTA	1 cut(s)	83
Eco32I	GATATC	1 cut(s)	282
EcoRV	GATATC	1 cut(s)	282
FaeI	CATG	2 cut(s)	231, 248
FaiI	YATR	9 cut(s)	71, 80, 90, 229, 246, 261, 270, 286, 299
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	2 cut(s)	227, 244
Fnu4HI	GCNGC	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	215
FspBI	CTAG	1 cut(s)	306
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	1 cut(s)	215
HapII	CCGG	2 cut(s)	238, 302
HgaI	GACGC	1 cut(s)	62
HhaI	GCGC	1 cut(s)	11
Hin1II	CATG	2 cut(s)	231, 248
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	4 cut(s)	205, 249, 341, 403
HpaII	CCGG	2 cut(s)	238, 302
HphI	GGTGA	2 cut(s)	121, 197
Hpy188I	TCNGA	1 cut(s)	415
Hpy188III	TCNNGA	3 cut(s)	62, 325, 394
Hpy99I	CGWCG	1 cut(s)	78
HpyAV	CCTTC	1 cut(s)	172
HpyCH4IV	ACGT	1 cut(s)	82
HpyCH4V	TGCA	4 cut(s)	111, 120, 217, 319
HpyF10VI	GCNNNNNNNGC	1 cut(s)	117
HpyF3I	CTNAG	1 cut(s)	399
HpySE526I	ACGT	1 cut(s)	82
Hsp92II	CATG	2 cut(s)	231, 248
HspAI	GCGC	1 cut(s)	9
Kzo9I	GATC	3 cut(s)	99, 415, 419
LguI	GCTCTTC	1 cut(s)	183
LpnPI	CCDG	8 cut(s)	32, 41, 145, 251, 303, 315, 339, 408
Lsp1109I	GCAGC	1 cut(s)	201
LweI	GCATC	1 cut(s)	129
MaeI	CTAG	1 cut(s)	306
MaeII	ACGT	1 cut(s)	82
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	3 cut(s)	101, 417, 421
MboI	GATC	3 cut(s)	99, 415, 419
MboII	GAAGA	4 cut(s)	29, 200, 289, 375
MluCI	AATT	1 cut(s)	139
MlyI	GAGTC	3 cut(s)	199, 243, 412
MnlI	CCTC	2 cut(s)	116, 142
MslI	CAYNNNNRTG	1 cut(s)	34
MspA1I	CMGCKG	1 cut(s)	214
MspI	CCGG	2 cut(s)	238, 302
Mva1269I	GAATGC	1 cut(s)	217
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	117
NdeII	GATC	3 cut(s)	99, 415, 419
NheI	GCTAGC	1 cut(s)	305
NlaIII	CATG	2 cut(s)	231, 248
NlaIV	GGNNCC	1 cut(s)	359
PaqCI	CACCTGC	1 cut(s)	140
PciSI	GCTCTTC	1 cut(s)	183
PctI	GAATGC	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	341
PkrI	GCNGC	1 cut(s)	216
PleI	GAGTC	3 cut(s)	199, 243, 411
PpsI	GAGTC	3 cut(s)	199, 243, 411
Ppu21I	YACGTR	1 cut(s)	83
PspN4I	GGNNCC	1 cut(s)	359
PstNI	CAGNNNCTG	1 cut(s)	108
RseI	CAYNNNNRTG	1 cut(s)	34
SapI	GCTCTTC	1 cut(s)	183
SatI	GCNGC	1 cut(s)	215
Sau3AI	GATC	3 cut(s)	99, 415, 419
SchI	GAGTC	3 cut(s)	199, 243, 412
SetI	ASST	8 cut(s)	60, 70, 85, 134, 183, 195, 311, 387
SfaNI	GCATC	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	34
SmlI	CTYRAG	2 cut(s)	251, 323
SmoI	CTYRAG	2 cut(s)	251, 323
SnaBI	TACGTA	1 cut(s)	83
Sse9I	AATT	1 cut(s)	139
SsiI	CCGC	1 cut(s)	212
SspMI	CTAG	1 cut(s)	306
TaiI	ACGT	1 cut(s)	85
TaqI	TCGA	1 cut(s)	418
TasI	AATT	1 cut(s)	139
TfiI	GAWTC	1 cut(s)	341
TscAI	CASTG	2 cut(s)	36, 354
TseI	GCWGC	1 cut(s)	214
TspDTI	ATGAA	6 cut(s)	17, 30, 77, 216, 233, 285
TspRI	CASTG	2 cut(s)	36, 354
XapI	RAATTY	1 cut(s)	139
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.