pycom08g12770

ATP synthesis coupled proton transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0009777
Physical Location & Seq
Forward (+)
11334033 .. 11335618
1586 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 447 bp
ATGTCGTATAGCACGCTGAGGATTGACGATGATGATTTTGTCCCTGTCCGGCAGCCGTCGATCGAACGGCATCGCCGCTCCAATTCTCTGCCGTTTGTGCCGTTGCTGCTCGTCGATGGCTTTTCCCGCAAGAGCTTCTCCTACTCCGCGCTTCCTCAGGAGCCACTCCGGCTCTCCGTTATGAAATTGGACGGCTCTTGCTTCGACATTCAAGTTGCTATGACGGCCACGGTTTTAGAATTGAAACAGGCAGTTGAGGCCGTTTTCAGTCACATGCCACAGAAGGGACCGGGAAAAATTTCATGGCCACACGTGTGGGGTCATTTCTGCTTGTGCTACGGTAATCAGAAGCTACTTGTTGAAACTGATCGATCATCAACCATTATGGAATCAAAGATGGTGATCAGCTGCATTTTGTCCGGCATGTTTCAATCAGCTACAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

149

Amino Acids

16.62

Weight (kDa)

7.71

Isoelectric Point (pI)

58.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubiquitin_4 PF18036 56 - 123 7.7e-19 Ubiquitin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 78
AccII CGCG 1 cut(s) 149
AciI CCGC 3 cut(s) 76, 127, 147
AcoI YGGCCR 2 cut(s) 225, 305
AcsI RAATTY 1 cut(s) 297
AcvI CACGTG 1 cut(s) 313
AfiI CCNNNNNNNGG 1 cut(s) 284
AflIII ACRYGT 2 cut(s) 310, 312
AgsI TTSAA 4 cut(s) 212, 244, 362, 431
AleI CACNNNNGTG 1 cut(s) 313
AluBI AGCT 4 cut(s) 135, 352, 408, 437
AluI AGCT 4 cut(s) 135, 352, 408, 437
AoxI GGCC 3 cut(s) 225, 258, 305
ApeKI GCWGC 3 cut(s) 52, 106, 408
ApoI RAATTY 1 cut(s) 297
Asp700I GAANNNNTTC 1 cut(s) 298
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 1 cut(s) 287
AsuC2I CCSGG 1 cut(s) 291
AsuHPI GGTGA 1 cut(s) 412
AvaII GGWCC 1 cut(s) 287
AxyI CCTNAGG 1 cut(s) 156
BalI TGGCCA 1 cut(s) 307
BbrPI CACGTG 1 cut(s) 313
BbvCI CCTCAGC 1 cut(s) 17
BbvI GCAGC 3 cut(s) 64, 93, 395
BccI CCATC 2 cut(s) 110, 391
BceAI ACGGC 7 cut(s) 40, 76, 83, 85, 208, 240, 245
BclI TGATCA 1 cut(s) 402
BcnI CCSGG 1 cut(s) 291
BfmI CTRYAG 1 cut(s) 438
BglI GCCNNNNNGGC 1 cut(s) 169
BisI GCNGC 4 cut(s) 53, 76, 107, 409
BlsI GCNGC 4 cut(s) 54, 77, 108, 410
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 287
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 2 cut(s) 162, 288
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 79
Bpu10I CCTNAGC 1 cut(s) 17
BpuMI CCSGG 1 cut(s) 291
Bsa29I ATCGAT 1 cut(s) 370
BsaAI YACGTR 1 cut(s) 313
BsaBI GATNNNNATC 1 cut(s) 401
BsaJI CCNNGG 1 cut(s) 228
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse21I CCTNAGG 1 cut(s) 156
Bse8I GATNNNNATC 1 cut(s) 401
BseCI ATCGAT 1 cut(s) 370
BseDI CCNNGG 1 cut(s) 228
BseJI GATNNNNATC 1 cut(s) 401
BseLI CCNNNNNNNGG 1 cut(s) 284
BseMII CTCAG 2 cut(s) 8, 170
BseXI GCAGC 3 cut(s) 64, 93, 395
Bsh1236I CGCG 1 cut(s) 149
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 3 cut(s) 227, 260, 307
BshVI ATCGAT 1 cut(s) 370
BsiEI CGRYCG 1 cut(s) 63
BsiSI CCGG 4 cut(s) 49, 169, 290, 420
BslFI GGGAC 2 cut(s) 26, 300
BslI CCNNNNNNNGG 1 cut(s) 284
BsmFI GGGAC 2 cut(s) 26, 300
BsnI GGCC 3 cut(s) 227, 260, 307
Bsp143I GATC 4 cut(s) 60, 367, 371, 402
BspACI CCGC 3 cut(s) 76, 127, 147
BspANI GGCC 3 cut(s) 227, 260, 307
BspCNI CTCAG 2 cut(s) 9, 169
BspDI ATCGAT 1 cut(s) 370
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 2 cut(s) 162, 288
BsrBI CCGCTC 1 cut(s) 78
BssECI CCNNGG 1 cut(s) 228
BssMI GATC 4 cut(s) 60, 367, 371, 402
Bst4CI ACNGT 2 cut(s) 232, 341
BstBAI YACGTR 1 cut(s) 313
BstC8I GCNNGC 1 cut(s) 14
BstDEI CTNAG 2 cut(s) 17, 156
BstDSI CCRYGG 1 cut(s) 228
BstFNI CGCG 1 cut(s) 149
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 4 cut(s) 63, 370, 374, 405
BstMBI GATC 4 cut(s) 60, 367, 371, 402
BstMCI CGRYCG 1 cut(s) 63
BstMWI GCNNNNNNNGC 6 cut(s) 97, 106, 126, 169, 224, 257
BstNSI RCATGY 2 cut(s) 277, 427
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 438
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 3 cut(s) 64, 93, 395
BstXI CCANNNNNNTGG 1 cut(s) 315
Bsu15I ATCGAT 1 cut(s) 370
Bsu36I CCTNAGG 1 cut(s) 156
BsuRI GGCC 3 cut(s) 227, 260, 307
BsuTUI ATCGAT 1 cut(s) 370
BtgI CCRYGG 1 cut(s) 228
BtgZI GCGATG 1 cut(s) 56
Cac8I GCNNGC 1 cut(s) 14
CfoI GCGC 1 cut(s) 151
Cfr13I GGNCC 1 cut(s) 287
ClaI ATCGAT 1 cut(s) 370
CviAII CATG 4 cut(s) 274, 303, 424, 444
DdeI CTNAG 2 cut(s) 17, 156
DpnI GATC 4 cut(s) 62, 369, 373, 404
DpnII GATC 4 cut(s) 60, 367, 371, 402
EaeI YGGCCR 2 cut(s) 225, 305
Eco47I GGWCC 1 cut(s) 287
Eco72I CACGTG 1 cut(s) 313
Eco81I CCTNAGG 1 cut(s) 156
FaeI CATG 4 cut(s) 277, 306, 427, 447
FaiI YATR 8 cut(s) 9, 182, 221, 275, 304, 386, 425, 445
FaqI GGGAC 2 cut(s) 26, 300
FatI CATG 4 cut(s) 273, 302, 423, 443
FauI CCCGC 1 cut(s) 134
FbaI TGATCA 1 cut(s) 402
Fnu4HI GCNGC 4 cut(s) 53, 76, 107, 409
Fsp4HI GCNGC 4 cut(s) 53, 76, 107, 409
GlaI GCGC 1 cut(s) 150
GluI GCNGC 4 cut(s) 53, 76, 107, 409
HaeIII GGCC 3 cut(s) 227, 260, 307
HapII CCGG 4 cut(s) 49, 169, 290, 420
HhaI GCGC 1 cut(s) 151
Hin1II CATG 4 cut(s) 277, 306, 427, 447
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HinfI GANTC 1 cut(s) 389
HpaII CCGG 4 cut(s) 49, 169, 290, 420
HphI GGTGA 1 cut(s) 412
Hpy188I TCNGA 1 cut(s) 348
Hpy188III TCNNGA 1 cut(s) 158
Hpy99I CGWCG 2 cut(s) 61, 116
HpyAV CCTTC 1 cut(s) 277
HpyCH4III ACNGT 2 cut(s) 232, 341
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 1 cut(s) 411
HpyF10VI GCNNNNNNNGC 6 cut(s) 97, 106, 126, 169, 224, 257
HpyF3I CTNAG 2 cut(s) 17, 156
HpySE526I ACGT 1 cut(s) 312
Hsp92II CATG 4 cut(s) 277, 306, 427, 447
HspAI GCGC 1 cut(s) 149
Ksp22I TGATCA 1 cut(s) 402
Kzo9I GATC 4 cut(s) 60, 367, 371, 402
LmnI GCTCC 2 cut(s) 83, 160
LpnPI CCDG 7 cut(s) 57, 62, 143, 182, 233, 303, 433
Lsp1109I GCAGC 3 cut(s) 64, 93, 395
LweI GCATC 1 cut(s) 79
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 1 cut(s) 269
MalI GATC 4 cut(s) 62, 369, 373, 404
MbiI CCGCTC 1 cut(s) 78
MboI GATC 4 cut(s) 60, 367, 371, 402
MlsI TGGCCA 1 cut(s) 307
MluCI AATT 4 cut(s) 82, 185, 239, 297
MluNI TGGCCA 1 cut(s) 307
MnlI CCTC 3 cut(s) 12, 165, 250
Mox20I TGGCCA 1 cut(s) 307
MroXI GAANNNNTTC 1 cut(s) 298
MscI TGGCCA 1 cut(s) 307
MslI CAYNNNNRTG 1 cut(s) 313
Msp20I TGGCCA 1 cut(s) 307
MspA1I CMGCKG 1 cut(s) 408
MspI CCGG 4 cut(s) 49, 169, 290, 420
MspR9I CCNGG 1 cut(s) 291
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 6 cut(s) 97, 106, 126, 169, 224, 257
NciI CCSGG 1 cut(s) 291
NdeII GATC 4 cut(s) 60, 367, 371, 402
NlaIII CATG 4 cut(s) 277, 306, 427, 447
NlaIV GGNNCC 2 cut(s) 162, 288
NmuCI GTSAC 1 cut(s) 269
NspI RCATGY 2 cut(s) 277, 427
OliI CACNNNNGTG 1 cut(s) 313
PdmI GAANNNNTTC 1 cut(s) 298
PfeI GAWTC 1 cut(s) 389
PkrI GCNGC 4 cut(s) 54, 77, 108, 410
Ple19I CGATCG 1 cut(s) 63
PmaCI CACGTG 1 cut(s) 313
PmlI CACGTG 1 cut(s) 313
Ppu21I YACGTR 1 cut(s) 313
PspCI CACGTG 1 cut(s) 313
PspN4I GGNNCC 2 cut(s) 162, 288
PspPI GGNCC 1 cut(s) 287
PvuI CGATCG 1 cut(s) 63
PvuII CAGCTG 1 cut(s) 408
RseI CAYNNNNRTG 1 cut(s) 313
SatI GCNGC 4 cut(s) 53, 76, 107, 409
Sau3AI GATC 4 cut(s) 60, 367, 371, 402
Sau96I GGNCC 1 cut(s) 287
ScrFI CCNGG 1 cut(s) 291
SetI ASST 5 cut(s) 137, 315, 354, 410, 439
SfaNI GCATC 1 cut(s) 79
SfcI CTRYAG 1 cut(s) 438
SinI GGWCC 1 cut(s) 287
SmiMI CAYNNNNRTG 1 cut(s) 313
Sse9I AATT 4 cut(s) 82, 185, 239, 297
SsiI CCGC 3 cut(s) 76, 127, 147
StyD4I CCNGG 1 cut(s) 289
TaaI ACNGT 2 cut(s) 232, 341
TaiI ACGT 1 cut(s) 315
TaqI TCGA 5 cut(s) 59, 63, 114, 204, 370
TasI AATT 4 cut(s) 82, 185, 239, 297
TauI GCSGC 1 cut(s) 78
TfiI GAWTC 1 cut(s) 389
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 3 cut(s) 52, 106, 408
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 2 cut(s) 197, 291
TspGWI ACGGA 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 287
XapI RAATTY 1 cut(s) 297
XceI RCATGY 2 cut(s) 277, 427
XmnI GAANNNNTTC 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.