pycom08g14040

Filament-like plant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0001130
Physical Location & Seq
Reverse (-)
13051899 .. 13053454
1556 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g14040.2

Sequence Viewer

Length: 1434 bp
ATGACAATTGAAAGGGACTTGAGTACTCAAGCAGCTGAAACGGCCAGTAAGCAACATTTAGAGAGTATAAAAAAGGTTGCAAGGCTTGAATCCGAGTGCCGGAGGCTAAAAGCTTTGGGTAGTAAAATACCTACTGTCATTGATCACAAGTCCAGTGCTGCTTCTTCAATGTACGTGGAGTCTTGCATGGATAGTCAATCGGACAGTGGAGAGCGGCTAAACATGATGGAGATAGATTCTCAAAAGATGAATGGCTCAGAGGCAAACAAGCGTGACCTGACTTTCTCTGACTGTTGGGCTTCGGCCCTGGTTGCTGAGCTTGATCGATCCAAGAATGAAAAGGCTGTAAGCAGAAATTTGCCTGCCCCTTCCATTGATGTTGATCTCATGGATGATTTCCTAGAGATGGAACGACTTGCTTCGTTGCCACAGACTGAGAATGAAGCTAGTTATCTGGAATCCGAAGCCATAGTTAATCAAACCAATAATGAAGAACGTGCCTTGAGAGCTGAACTTGAAGCCATGAGTCATCGGATGGCCGAACTTGAGGACAAGTTAGAAAAGCTTGAAGTAGAGAAAGAAAAGTTAGAGGTAGAGAATGCTGAAATTGAAGCTATGAGTCATCGGGCAGCCGAATTAGAAGACATGTTAGAAAAGAAGGAAGTTGAGAGAGAAAATTTGGAAGTAGAGAAAGCTAAAATAAAAACCGCTTTAGCCAAAAGTCAAGAATGTTATGCGGCAGCAGAGTTTCAGCTTAAAGAAGCAGAAATGAAGTTGGAGGAGTTACAAAAGGAGCTAAGTATTGCAAATGAATCAAGGCAGACTATTGAGTCTCAGCTCATTAGCATGGAAGCAGAGGCGCGGACCATGTCTGCTAAGGTTGATTCTTTGGAAGCAGAGGTTCAAAGGGAGAAGGCTTTGTCAACAGAAATTGCCATCAGATGTCAGGATTTAGAGGAGGAGCTATCAAGAAAAAACGAAGAATTCAAGCTTCAGAAAACTGCTTGCTCGAACAGTGAATTGAAGAGAAAGCAGGAAGACCTAGCTGTAGCAGCTGGAAAGCTTGCTGAGTGCCAGAAGACAATAGCATCGCTAGGAAATCAACTCAAATCTCTAGCGACACTAGAAGATTTCCTGATAGACTCCGAAAGCCTCCCAGGGTTCACTGGTGTTGCGCCGCAGATTCCTCAGGCTGATGAACAGTGGAAGTTGCATTCCAATGTGACATTTTCACCTAAACGAGATTCTGTATCAAAACCAGCCGATGAGAGTTGTGGTCCTTCAACAAATAGAAATGAGGACAACTCCCCACCATCTTCGTCTGCATCAACCTCATCCACTGTGTTGTCGACTCATGTCAGCTCTGAGAAGAATCGAAATGGGTTTGCGAAGTTCTTCTCCCGAACCAAGAGTGGGATACGACTAGAAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FPP

Protein Analysis

478

Amino Acids

53.2

Weight (kDa)

4.86

Isoelectric Point (pI)

55.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 829
AccBSI CCGCTC 1 cut(s) 214
AccI GTMKAC 1 cut(s) 1349
AccII CGCG 1 cut(s) 862
AciI CCGC 5 cut(s) 214, 708, 737, 862, 1178
AclWI GGATC 1 cut(s) 321
AcoI YGGCCR 2 cut(s) 42, 537
AcsI RAATTY 4 cut(s) 355, 676, 983, 1428
AcuI CTGAAG 1 cut(s) 977
AfaI GTAC 2 cut(s) 25, 173
AfiI CCNNNNNNNGG 3 cut(s) 99, 406, 1413
AflIII ACRYGT 1 cut(s) 645
AjnI CCWGG 2 cut(s) 306, 1156
Alw26I GTCTC 1 cut(s) 837
AlwI GGATC 1 cut(s) 321
AoxI GGCC 3 cut(s) 42, 303, 537
ApeKI GCWGC 5 cut(s) 32, 158, 629, 740, 1052
ApoI RAATTY 4 cut(s) 355, 676, 983, 1428
Asp700I GAANNNNTTC 1 cut(s) 1394
AspLEI GCGC 2 cut(s) 862, 1177
AspS9I GGNCC 3 cut(s) 304, 864, 1277
AsuHPI GGTGA 1 cut(s) 1224
AvaII GGWCC 2 cut(s) 864, 1277
AxyI CCTNAGG 1 cut(s) 1188
BbsI GAAGAC 3 cut(s) 648, 1044, 1085
BbvI GCAGC 5 cut(s) 44, 145, 641, 752, 1064
BccI CCATC 5 cut(s) 220, 400, 529, 944, 1321
BceAI ACGGC 1 cut(s) 57
BciT130I CCWGG 2 cut(s) 308, 1158
BciVI GTATCC 1 cut(s) 1410
BclI TGATCA 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 837
BfaI CTAG 7 cut(s) 401, 447, 1043, 1094, 1115, 1124, 1424
BfmI CTRYAG 1 cut(s) 1047
BfuI GTATCC 1 cut(s) 1410
BisI GCNGC 8 cut(s) 33, 159, 215, 630, 738, 741, 1053, 1178
BlpI GCTNAGC 1 cut(s) 315
BlsI GCNGC 8 cut(s) 34, 160, 216, 631, 739, 742, 1054, 1179
BmcAI AGTACT 1 cut(s) 25
Bme1390I CCNGG 2 cut(s) 308, 1158
Bme18I GGWCC 2 cut(s) 864, 1277
BmgT120I GGNCC 3 cut(s) 304, 864, 1277
BmrFI CCNGG 2 cut(s) 308, 1158
BmsI GCATC 2 cut(s) 1097, 1334
BoxI GACNNNNGTC 1 cut(s) 1355
BpiI GAAGAC 3 cut(s) 648, 1044, 1085
BplI GAGNNNNNCTC 2 cut(s) 1289, 1321
Bpu10I CCTNAGC 1 cut(s) 876
Bpu1102I GCTNAGC 1 cut(s) 315
BpuEI CTTGAG 4 cut(s) 12, 40, 523, 566
Bsa29I ATCGAT 1 cut(s) 325
BsaAI YACGTR 1 cut(s) 175
BsaBI GATNNNNATC 1 cut(s) 381
BsaJI CCNNGG 3 cut(s) 306, 1156, 1157
Bsc4I CCNNNNNNNGG 3 cut(s) 99, 406, 1413
Bse1I ACTGG 3 cut(s) 45, 153, 1171
Bse21I CCTNAGG 1 cut(s) 1188
Bse8I GATNNNNATC 1 cut(s) 381
BseBI CCWGG 2 cut(s) 308, 1158
BseCI ATCGAT 1 cut(s) 325
BseDI CCNNGG 3 cut(s) 306, 1156, 1157
BseGI GGATG 3 cut(s) 397, 540, 1334
BseJI GATNNNNATC 1 cut(s) 381
BseLI CCNNNNNNNGG 3 cut(s) 99, 406, 1413
BseMII CTCAG 7 cut(s) 270, 306, 426, 848, 1059, 1202, 1356
BseNI ACTGG 3 cut(s) 45, 153, 1171
BseRI GAGGAG 3 cut(s) 794, 971, 974
BseXI GCAGC 5 cut(s) 44, 145, 641, 752, 1064
Bsh1236I CGCG 1 cut(s) 862
BshFI GGCC 3 cut(s) 44, 305, 539
BshVI ATCGAT 1 cut(s) 325
BsiSI CCGG 1 cut(s) 100
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 3 cut(s) 99, 406, 1413
BsmAI GTCTC 1 cut(s) 837
BsmFI GGGAC 1 cut(s) 29
BsmI GAATGC 2 cut(s) 604, 1213
BsnI GGCC 3 cut(s) 44, 305, 539
Bsp143I GATC 4 cut(s) 142, 322, 326, 382
Bsp1720I GCTNAGC 1 cut(s) 315
BspACI CCGC 5 cut(s) 214, 708, 737, 862, 1178
BspANI GGCC 3 cut(s) 44, 305, 539
BspCNI CTCAG 7 cut(s) 269, 307, 427, 847, 1060, 1201, 1357
BspDI ATCGAT 1 cut(s) 325
BspFNI CGCG 1 cut(s) 862
BspPI GGATC 1 cut(s) 321
BsrBI CCGCTC 1 cut(s) 214
BsrI ACTGG 3 cut(s) 45, 153, 1171
BssECI CCNNGG 3 cut(s) 306, 1156, 1157
BssMI GATC 4 cut(s) 142, 322, 326, 382
Bst2UI CCWGG 2 cut(s) 308, 1158
Bst4CI ACNGT 6 cut(s) 136, 206, 293, 1016, 1203, 1342
Bst6I CTCTTC 1 cut(s) 1019
BstBAI YACGTR 1 cut(s) 175
BstC8I GCNNGC 3 cut(s) 363, 1006, 1065
BstDEI CTNAG 9 cut(s) 256, 315, 435, 797, 834, 876, 1068, 1188, 1365
BstF5I GGATG 3 cut(s) 397, 540, 1334
BstFNI CGCG 1 cut(s) 862
BstHHI GCGC 2 cut(s) 862, 1177
BstKTI GATC 4 cut(s) 145, 325, 329, 385
BstMAI GTCTC 1 cut(s) 837
BstMBI GATC 4 cut(s) 142, 322, 326, 382
BstMWI GCNNNNNNNGC 4 cut(s) 41, 311, 506, 1052
BstNI CCWGG 2 cut(s) 308, 1158
BstNSI RCATGY 1 cut(s) 649
BstPAI GACNNNNGTC 1 cut(s) 1355
BstSCI CCNGG 2 cut(s) 306, 1156
BstSFI CTRYAG 1 cut(s) 1047
BstUI CGCG 1 cut(s) 862
BstV1I GCAGC 5 cut(s) 44, 145, 641, 752, 1064
BstV2I GAAGAC 3 cut(s) 648, 1044, 1085
Bsu15I ATCGAT 1 cut(s) 325
Bsu36I CCTNAGG 1 cut(s) 1188
BsuI GTATCC 1 cut(s) 1410
BsuRI GGCC 3 cut(s) 44, 305, 539
BsuTUI ATCGAT 1 cut(s) 325
BtgZI GCGATG 1 cut(s) 1074
BtsCI GGATG 3 cut(s) 397, 540, 1334
BtsIMutI CAGTG 6 cut(s) 160, 211, 1021, 1164, 1208, 1338
Cac8I GCNNGC 3 cut(s) 363, 1006, 1065
CfoI GCGC 2 cut(s) 862, 1177
Cfr13I GGNCC 3 cut(s) 304, 864, 1277
ClaI ATCGAT 1 cut(s) 325
Csp6I GTAC 2 cut(s) 24, 172
CspCI CAANNNNNGTGG 2 cut(s) 156, 191
CviAII CATG 8 cut(s) 187, 223, 388, 523, 646, 847, 868, 1355
CviQI GTAC 2 cut(s) 24, 172
DdeI CTNAG 9 cut(s) 256, 315, 435, 797, 834, 876, 1068, 1188, 1365
DpnI GATC 4 cut(s) 144, 324, 328, 384
DpnII GATC 4 cut(s) 142, 322, 326, 382
DrdI GACNNNNNNGTC 1 cut(s) 829
DseDI GACNNNNNNGTC 1 cut(s) 829
EaeI YGGCCR 2 cut(s) 42, 537
Eam1104I CTCTTC 1 cut(s) 1019
EarI CTCTTC 1 cut(s) 1019
Eco47I GGWCC 2 cut(s) 864, 1277
Eco57I CTGAAG 1 cut(s) 977
Eco81I CCTNAGG 1 cut(s) 1188
EcoRI GAATTC 1 cut(s) 983
EcoRII CCWGG 2 cut(s) 306, 1156
FaeI CATG 8 cut(s) 190, 226, 391, 526, 649, 850, 871, 1358
FaqI GGGAC 1 cut(s) 29
FatI CATG 8 cut(s) 186, 222, 387, 522, 645, 846, 867, 1354
FbaI TGATCA 1 cut(s) 142
FblI GTMKAC 1 cut(s) 1349
Fnu4HI GCNGC 8 cut(s) 33, 159, 215, 630, 738, 741, 1053, 1178
FokI GGATG 3 cut(s) 404, 547, 1321
Fsp4HI GCNGC 8 cut(s) 33, 159, 215, 630, 738, 741, 1053, 1178
FspBI CTAG 7 cut(s) 401, 447, 1043, 1094, 1115, 1124, 1424
GlaI GCGC 2 cut(s) 861, 1176
GluI GCNGC 8 cut(s) 33, 159, 215, 630, 738, 741, 1053, 1178
HaeIII GGCC 3 cut(s) 44, 305, 539
HapII CCGG 1 cut(s) 100
HhaI GCGC 2 cut(s) 862, 1177
Hin1II CATG 8 cut(s) 190, 226, 391, 526, 649, 850, 871, 1358
Hin6I GCGC 2 cut(s) 860, 1175
HinP1I GCGC 2 cut(s) 860, 1175
HincII GTYRAC 2 cut(s) 924, 1350
HindII GTYRAC 2 cut(s) 924, 1350
HindIII AAGCTT 4 cut(s) 111, 563, 989, 1061
HpaII CCGG 1 cut(s) 100
HphI GGTGA 1 cut(s) 1224
Hpy166II GTNNAC 3 cut(s) 924, 1164, 1350
Hpy188III TCNNGA 6 cut(s) 455, 725, 947, 969, 1135, 1401
Hpy8I GTNNAC 3 cut(s) 924, 1164, 1350
HpyAV CCTTC 4 cut(s) 378, 652, 907, 1290
HpyCH4III ACNGT 6 cut(s) 136, 206, 293, 1016, 1203, 1342
HpyCH4IV ACGT 2 cut(s) 174, 496
HpyCH4V TGCA 5 cut(s) 80, 186, 806, 1213, 1325
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 311, 506, 1052
HpyF3I CTNAG 9 cut(s) 256, 315, 435, 797, 834, 876, 1068, 1188, 1365
HpySE526I ACGT 2 cut(s) 174, 496
Hsp92II CATG 8 cut(s) 190, 226, 391, 526, 649, 850, 871, 1358
HspAI GCGC 2 cut(s) 860, 1175
Ksp22I TGATCA 1 cut(s) 142
Kzo9I GATC 4 cut(s) 142, 322, 326, 382
LmnI GCTCC 2 cut(s) 793, 961
Lsp1109I GCAGC 5 cut(s) 44, 145, 641, 752, 1064
LweI GCATC 2 cut(s) 1097, 1334
MaeI CTAG 7 cut(s) 401, 447, 1043, 1094, 1115, 1124, 1424
MaeII ACGT 2 cut(s) 174, 496
MaeIII GTNAC 3 cut(s) 272, 783, 1222
MalI GATC 4 cut(s) 144, 324, 328, 384
MbiI CCGCTC 1 cut(s) 214
MboI GATC 4 cut(s) 142, 322, 326, 382
MfeI CAATTG 1 cut(s) 6
MluCI AATT 9 cut(s) 6, 355, 606, 635, 676, 930, 983, 1019, 1428
MlyI GAGTC 6 cut(s) 188, 535, 628, 839, 1136, 1345
MmeI TCCRAC 1 cut(s) 756
MroXI GAANNNNTTC 1 cut(s) 1394
MseI TTAA 2 cut(s) 474, 756
MslI CAYNNNNRTG 2 cut(s) 845, 1218
MspA1I CMGCKG 2 cut(s) 35, 1055
MspI CCGG 1 cut(s) 100
MspR9I CCNGG 2 cut(s) 308, 1158
MunI CAATTG 1 cut(s) 6
Mva1269I GAATGC 2 cut(s) 604, 1213
MvaI CCWGG 2 cut(s) 308, 1158
MvnI CGCG 1 cut(s) 862
MwoI GCNNNNNNNGC 4 cut(s) 41, 311, 506, 1052
NdeII GATC 4 cut(s) 142, 322, 326, 382
NlaIII CATG 8 cut(s) 190, 226, 391, 526, 649, 850, 871, 1358
NmuCI GTSAC 2 cut(s) 272, 1222
NspI RCATGY 1 cut(s) 649
PasI CCCWGGG 1 cut(s) 1157
PciI ACATGT 1 cut(s) 645
PctI GAATGC 2 cut(s) 604, 1213
PdmI GAANNNNTTC 1 cut(s) 1394
PfeI GAWTC 8 cut(s) 89, 236, 458, 812, 884, 1183, 1244, 1372
PflFI GACNNNGTC 1 cut(s) 868
PkrI GCNGC 8 cut(s) 34, 160, 216, 631, 739, 742, 1054, 1179
PleI GAGTC 6 cut(s) 187, 534, 627, 838, 1136, 1345
PpsI GAGTC 6 cut(s) 187, 534, 627, 838, 1136, 1345
Ppu21I YACGTR 1 cut(s) 175
PscI ACATGT 1 cut(s) 645
PshAI GACNNNNGTC 1 cut(s) 1355
Psp6I CCWGG 2 cut(s) 306, 1156
PspGI CCWGG 2 cut(s) 306, 1156
PspPI GGNCC 3 cut(s) 304, 864, 1277
PsyI GACNNNGTC 1 cut(s) 868
PvuII CAGCTG 2 cut(s) 35, 1055
RsaI GTAC 2 cut(s) 25, 173
RsaNI GTAC 2 cut(s) 24, 172
RseI CAYNNNNRTG 2 cut(s) 845, 1218
SalI GTCGAC 1 cut(s) 1348
SaqAI TTAA 2 cut(s) 474, 756
SatI GCNGC 8 cut(s) 33, 159, 215, 630, 738, 741, 1053, 1178
Sau3AI GATC 4 cut(s) 142, 322, 326, 382
Sau96I GGNCC 3 cut(s) 304, 864, 1277
ScaI AGTACT 1 cut(s) 25
SchI GAGTC 6 cut(s) 188, 535, 628, 839, 1136, 1345
ScrFI CCNGG 2 cut(s) 308, 1158
SfaNI GCATC 2 cut(s) 1097, 1334
SfcI CTRYAG 1 cut(s) 1047
SinI GGWCC 2 cut(s) 864, 1277
SmiMI CAYNNNNRTG 2 cut(s) 845, 1218
SmlI CTYRAG 4 cut(s) 19, 27, 502, 545
SmoI CTYRAG 4 cut(s) 19, 27, 502, 545
Sse9I AATT 9 cut(s) 6, 355, 606, 635, 676, 930, 983, 1019, 1428
SsiI CCGC 5 cut(s) 214, 708, 737, 862, 1178
SspMI CTAG 7 cut(s) 401, 447, 1043, 1094, 1115, 1124, 1424
StyD4I CCNGG 2 cut(s) 306, 1156
TaaI ACNGT 6 cut(s) 136, 206, 293, 1016, 1203, 1342
TaiI ACGT 2 cut(s) 177, 499
TaqI TCGA 4 cut(s) 325, 1010, 1349, 1375
TasI AATT 9 cut(s) 6, 355, 606, 635, 676, 930, 983, 1019, 1428
TatI WGTACW 1 cut(s) 23
TauI GCSGC 3 cut(s) 217, 740, 1180
TfiI GAWTC 8 cut(s) 89, 236, 458, 812, 884, 1183, 1244, 1372
Tru1I TTAA 2 cut(s) 474, 756
Tru9I TTAA 2 cut(s) 474, 756
TscAI CASTG 6 cut(s) 160, 211, 1021, 1171, 1208, 1345
TseFI GTSAC 2 cut(s) 272, 1222
TseI GCWGC 5 cut(s) 32, 158, 629, 740, 1052
Tsp45I GTSAC 2 cut(s) 272, 1222
TspDTI ATGAA 7 cut(s) 263, 351, 456, 504, 785, 825, 1212
TspRI CASTG 6 cut(s) 160, 211, 1021, 1171, 1208, 1345
Tth111I GACNNNGTC 1 cut(s) 868
VpaK11BI GGWCC 2 cut(s) 864, 1277
XapI RAATTY 4 cut(s) 355, 676, 983, 1428
XceI RCATGY 1 cut(s) 649
XmiI GTMKAC 1 cut(s) 1349
XmnI GAANNNNTTC 1 cut(s) 1394
XspI CTAG 7 cut(s) 401, 447, 1043, 1094, 1115, 1124, 1424
ZrmI AGTACT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.