Rmu_sc0004915.1_g000004

Filament-like plant protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004915.1
Physical Location & Seq
Reverse (-)
34896 .. 37793
2898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004915.1_g000004.1.cds

Sequence Viewer

Length: 1686 bp
atgtcaaaggcattcccaactcatagcattcagtcgctggaagtcacttctaaagctccacgcagtgatgaagaacttaatgaaagtgttgggactttgaaggagaaactatcagctgctcttcttgacagtaacgccaaagatgaattggtaaagcagcatgctaaagttgcagaagaagctgtctcaggctgggagaagtctgaaaatgaagtgttgggcttaaaacagcaacttgaggctacaaatcagaaaaactcagctcttaaagaccgagttggtcatcttgatggagcactgaaagaatgtgtgaggcagcttcgacaggcaagagaagatcaagaccggaatactaatgaggttgttgctaagaaaactcgtgaatgggatagttcaaagtccatacttgagagccagcttgctgatctccaagcacaacttcaagctgctaaaactgaagctgctgcctctattggtaaggatctccggttaaagcttgaggctactgaaaaagagaactctgctcttaagcttagtcttcgctctcgagtcaaggagcttgaaattgcaactatagagagggatttgagcacccaagctgctgaagcagcgagtaagcaacatttagagagcataaaaaaggttgttaagcttgaagctgagtgccgtaggctaaacgccttggcacgtaaagcactaccagataatggtcacaaatccttttctacatcctcagtttatgtagaatcctttatagatagccaatcagatagtggggagagggtactggcaattgagttggatacagataaagcgagtgacttggagccaagtgaatgtgattcaagccagtcaaattcacgtacatctgctcgtatcacagatcctgataaatttaataaagaaaaaggtgttggaaaaaatctaatggttccttcagtagatatcaatctcatggatgattttcttgaaatggaaaggtttgctgcaacgccagttacaaaaaataagaactgttaccttgaggcaggactcagatcaaaccagtgtactgctggaaaaaaccttctagaaactgaacttgaaaccatgattcaaaggactgcggaactggaggggaagttagagaagatggtgacagaaaaagtggaacttgagatgactatgactgagtgcgaaaaggagattcagacattaaaaagtcagctactggaggctgatttgaagttggaagaccttcaaacacagttgaatattgcaaatggatcaaggtatgcttcagatgaagaagtaaaggcctgtcaaacaatgagagaagtggctgagtcacaactaagatccgttcaaactgaacttgactgcttgattttaaaagtcggtgcactagaggaagatgtctcaaaggagcgagctttatcagctgaaaatgaggccaaatgccagaaagttgagaatgagctattgataatgaaacatgaagctgagctccagcgtatggctagtactagcggtgatttgaagatacagcaggagaaagagctggcattggctgcaagtaaatttgcagagtgccagaaaacaattgcatctcttggccaacagttgaaatcacttgcaacattggaggacatcttaatggactcagataggccatcggacctgattgatgaagctttgcattcatga

Protein Analysis

561

Amino Acids

62.26

Weight (kDa)

4.98

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 707, 1495
AciI CCGC 2 cut(s) 1106, 1509
AclWI GGATC 4 cut(s) 489, 878, 1273, 1332
AcoI YGGCCR 1 cut(s) 1594
AcsI RAATTY 3 cut(s) 856, 893, 1559
AcuI CTGAAG 4 cut(s) 477, 624, 921, 1263
AdeI CACNNNGTG 1 cut(s) 65
AfaI GTAC 4 cut(s) 786, 865, 1051, 1504
AfiI CCNNNNNNNGG 2 cut(s) 707, 1495
AflII CTTAAG 1 cut(s) 527
AjuI GAANNNNNNNTTGG 4 cut(s) 423, 455, 897, 929
Alw21I GWGCWC 4 cut(s) 298, 593, 1384, 1488
Alw26I GTCTC 2 cut(s) 190, 1402
Alw44I GTGCAC 1 cut(s) 1380
AlwI GGATC 4 cut(s) 489, 878, 1273, 1332
AlwNI CAGNNNCTG 3 cut(s) 37, 887, 1210
Ama87I CYCGRG 1 cut(s) 546
AoxI GGCC 4 cut(s) 1296, 1431, 1594, 1649
ApaLI GTGCAC 1 cut(s) 1380
ApoI RAATTY 3 cut(s) 856, 893, 1559
Asp700I GAANNNNTTC 1 cut(s) 1236
AspS9I GGNCC 1 cut(s) 1657
AsuHPI GGTGA 2 cut(s) 1147, 1523
AvaI CYCGRG 1 cut(s) 546
AvaII GGWCC 1 cut(s) 1657
BaeGI GKGCMC 1 cut(s) 1384
BalI TGGCCA 1 cut(s) 1596
BanII GRGCYC 1 cut(s) 1488
BauI CACGAG 1 cut(s) 378
BbsI GAAGAC 2 cut(s) 530, 1239
Bbv12I GWGCWC 4 cut(s) 298, 593, 1384, 1488
BccI CCATC 3 cut(s) 284, 1126, 1660
BceAI ACGGC 1 cut(s) 651
BciVI GTATCC 1 cut(s) 796
BcoDI GTCTC 2 cut(s) 190, 1402
BfaI CTAG 4 cut(s) 1070, 1385, 1500, 1506
BfmI CTRYAG 1 cut(s) 573
BfrI CTTAAG 1 cut(s) 527
BfuI GTATCC 1 cut(s) 796
BlpI GCTNAGC 1 cut(s) 1482
BmcAI AGTACT 1 cut(s) 1504
Bme18I GGWCC 1 cut(s) 1657
BmeT110I CYCGRG 1 cut(s) 546
BmgT120I GGNCC 1 cut(s) 1657
BmiI GGNNCC 2 cut(s) 828, 933
BmsI GCATC 1 cut(s) 1595
BpiI GAAGAC 2 cut(s) 530, 1239
BpmI CTGGAG 3 cut(s) 1133, 1232, 1472
Bpu1102I GCTNAGC 1 cut(s) 1482
BpuEI CTTGAG 5 cut(s) 257, 428, 518, 1043, 1175
BsaAI YACGTR 2 cut(s) 689, 863
BsaBI GATNNNNATC 1 cut(s) 948
BsaJI CCNNGG 1 cut(s) 681
BsaWI WCCGGW 2 cut(s) 345, 486
BsaXI ACNNNNNCTCC 2 cut(s) 1106, 1136
Bsc4I CCNNNNNNNGG 2 cut(s) 707, 1495
Bse1I ACTGG 6 cut(s) 792, 850, 995, 1045, 1116, 1215
Bse8I GATNNNNATC 1 cut(s) 948
BseDI CCNNGG 1 cut(s) 681
BseGI GGATG 2 cut(s) 728, 964
BseJI GATNNNNATC 1 cut(s) 948
BseLI CCNNNNNNNGG 2 cut(s) 707, 1495
BseMII CTCAG 9 cut(s) 201, 273, 651, 747, 1048, 1161, 1314, 1473, 1656
BseNI ACTGG 6 cut(s) 792, 850, 995, 1045, 1116, 1215
BseSI GKGCMC 1 cut(s) 1384
BseYI CCCAGC 1 cut(s) 192
BshFI GGCC 4 cut(s) 1298, 1433, 1596, 1651
BsiHKAI GWGCWC 4 cut(s) 298, 593, 1384, 1488
BsiHKCI CYCGRG 1 cut(s) 546
BsiSI CCGG 2 cut(s) 346, 487
BslFI GGGAC 1 cut(s) 106
BslI CCNNNNNNNGG 2 cut(s) 707, 1495
BsmAI GTCTC 2 cut(s) 190, 1402
BsmFI GGGAC 1 cut(s) 106
BsmI GAATGC 3 cut(s) 11, 27, 1678
BsnI GGCC 4 cut(s) 1298, 1433, 1596, 1651
BsoBI CYCGRG 1 cut(s) 546
Bsp1286I GDGCHC 4 cut(s) 298, 593, 1384, 1488
Bsp143I GATC 7 cut(s) 337, 424, 481, 883, 1037, 1265, 1337
Bsp1720I GCTNAGC 1 cut(s) 1482
BspACI CCGC 2 cut(s) 1106, 1509
BspANI GGCC 4 cut(s) 1298, 1433, 1596, 1651
BspCNI CTCAG 9 cut(s) 200, 272, 652, 746, 1047, 1162, 1315, 1474, 1655
BspHI TCATGA 1 cut(s) 1682
BspLI GGNNCC 2 cut(s) 828, 933
BspPI GGATC 4 cut(s) 489, 878, 1273, 1332
BspQI GCTCTTC 1 cut(s) 126
BspTI CTTAAG 1 cut(s) 527
BsrI ACTGG 6 cut(s) 792, 850, 995, 1045, 1116, 1215
BssECI CCNNGG 1 cut(s) 681
BssMI GATC 7 cut(s) 337, 424, 481, 883, 1037, 1265, 1337
BssSI CACGAG 1 cut(s) 378
BssT1I CCWWGG 1 cut(s) 681
Bst2BI CACGAG 1 cut(s) 378
Bst4CI ACNGT 4 cut(s) 131, 1016, 1248, 1602
Bst6I CTCTTC 1 cut(s) 126
BstAFI CTTAAG 1 cut(s) 527
BstAPI GCANNNNNTGC 1 cut(s) 1550
BstBAI YACGTR 2 cut(s) 689, 863
BstC8I GCNNGC 5 cut(s) 162, 416, 420, 1410, 1542
BstF5I GGATG 2 cut(s) 728, 964
BstKTI GATC 7 cut(s) 340, 427, 484, 886, 1040, 1268, 1340
BstMAI GTCTC 2 cut(s) 190, 1402
BstMBI GATC 7 cut(s) 337, 424, 481, 883, 1037, 1265, 1337
BstMWI GCNNNNNNNGC 7 cut(s) 170, 179, 605, 608, 692, 1418, 1550
BstNSI RCATGY 1 cut(s) 164
BstSFI CTRYAG 1 cut(s) 573
BstSLI GKGCMC 1 cut(s) 1384
BstV2I GAAGAC 2 cut(s) 530, 1239
BstX2I RGATCY 3 cut(s) 481, 883, 1337
BstYI RGATCY 3 cut(s) 481, 883, 1337
BsuI GTATCC 1 cut(s) 796
BsuRI GGCC 4 cut(s) 1298, 1433, 1596, 1651
BtsCI GGATG 2 cut(s) 728, 964
BtsI GCAGTG 1 cut(s) 70
BtsIMutI CAGTG 3 cut(s) 70, 296, 1052
Cac8I GCNNGC 5 cut(s) 162, 416, 420, 1410, 1542
CaiI CAGNNNCTG 3 cut(s) 37, 887, 1210
CciI TCATGA 1 cut(s) 1682
Cfr13I GGNCC 1 cut(s) 1657
Csp6I GTAC 4 cut(s) 785, 864, 1050, 1503
CviAII CATG 5 cut(s) 161, 955, 1090, 1475, 1683
CviQI GTAC 4 cut(s) 785, 864, 1050, 1503
DpnI GATC 7 cut(s) 339, 426, 483, 885, 1039, 1267, 1339
DpnII GATC 7 cut(s) 337, 424, 481, 883, 1037, 1265, 1337
DraI TTTAAA 1 cut(s) 1371
DraIII CACNNNGTG 1 cut(s) 65
EaeI YGGCCR 1 cut(s) 1594
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
Ecl136II GAGCTC 1 cut(s) 1486
Eco130I CCWWGG 1 cut(s) 681
Eco147I AGGCCT 1 cut(s) 1298
Eco24I GRGCYC 1 cut(s) 1488
Eco32I GATATC 1 cut(s) 946
Eco47I GGWCC 1 cut(s) 1657
Eco53kI GAGCTC 1 cut(s) 1486
Eco57I CTGAAG 4 cut(s) 477, 624, 921, 1263
Eco88I CYCGRG 1 cut(s) 546
EcoICRI GAGCTC 1 cut(s) 1486
EcoRV GATATC 1 cut(s) 946
EcoT14I CCWWGG 1 cut(s) 681
EcoT38I GRGCYC 1 cut(s) 1488
ErhI CCWWGG 1 cut(s) 681
FaeI CATG 5 cut(s) 164, 958, 1093, 1478, 1686
FalI AAGNNNNNCTT 6 cut(s) 423, 455, 1137, 1169, 1261, 1293
FaqI GGGAC 1 cut(s) 106
FatI CATG 5 cut(s) 160, 954, 1089, 1474, 1682
FokI GGATG 2 cut(s) 715, 971
FriOI GRGCYC 1 cut(s) 1488
FspBI CTAG 4 cut(s) 1070, 1385, 1500, 1506
GsaI CCCAGC 1 cut(s) 196
GsuI CTGGAG 3 cut(s) 1133, 1232, 1472
HaeIII GGCC 4 cut(s) 1298, 1433, 1596, 1651
HapII CCGG 2 cut(s) 346, 487
Hin1II CATG 5 cut(s) 164, 958, 1093, 1478, 1686
HindIII AAGCTT 4 cut(s) 494, 530, 650, 1671
HinfI GANTC 8 cut(s) 549, 746, 842, 1032, 1093, 1186, 1325, 1640
HpaII CCGG 2 cut(s) 346, 487
HphI GGTGA 2 cut(s) 1147, 1523
Hpy166II GTNNAC 2 cut(s) 1050, 1382
Hpy188I TCNGA 8 cut(s) 205, 252, 769, 1037, 1191, 1282, 1645, 1657
Hpy188III TCNNGA 9 cut(s) 125, 287, 341, 380, 546, 887, 968, 1070, 1683
Hpy8I GTNNAC 2 cut(s) 1050, 1382
HpyAV CCTTC 4 cut(s) 94, 945, 1076, 1247
HpyCH4III ACNGT 4 cut(s) 131, 1016, 1248, 1602
HpyCH4IV ACGT 2 cut(s) 688, 862
HpyF10VI GCNNNNNNNGC 7 cut(s) 170, 179, 605, 608, 692, 1418, 1550
HpySE526I ACGT 2 cut(s) 688, 862
Hsp92II CATG 5 cut(s) 164, 958, 1093, 1478, 1686
Kzo9I GATC 7 cut(s) 337, 424, 481, 883, 1037, 1265, 1337
LguI GCTCTTC 1 cut(s) 126
LmnI GCTCC 6 cut(s) 61, 293, 556, 826, 1405, 1491
LweI GCATC 1 cut(s) 1595
MaeI CTAG 4 cut(s) 1070, 1385, 1500, 1506
MaeII ACGT 2 cut(s) 688, 862
MaeIII GTNAC 8 cut(s) 43, 131, 710, 818, 997, 1016, 1135, 1326
MalI GATC 7 cut(s) 339, 426, 483, 885, 1039, 1267, 1339
MboI GATC 7 cut(s) 337, 424, 481, 883, 1037, 1265, 1337
MfeI CAATTG 2 cut(s) 792, 1581
MflI RGATCY 3 cut(s) 481, 883, 1337
MhlI GDGCHC 4 cut(s) 298, 593, 1384, 1488
MlsI TGGCCA 1 cut(s) 1596
MluCI AATT 7 cut(s) 146, 564, 792, 856, 893, 1559, 1581
MluNI TGGCCA 1 cut(s) 1596
MlyI GAGTC 4 cut(s) 558, 1026, 1334, 1634
MmeI TCCRAC 3 cut(s) 780, 895, 1209
Mox20I TGGCCA 1 cut(s) 1596
MroXI GAANNNNTTC 1 cut(s) 1236
MscI TGGCCA 1 cut(s) 1596
MslI CAYNNNNRTG 2 cut(s) 288, 1634
Msp20I TGGCCA 1 cut(s) 1596
MspA1I CMGCKG 2 cut(s) 116, 1421
MspCI CTTAAG 1 cut(s) 527
MspI CCGG 2 cut(s) 346, 487
MunI CAATTG 2 cut(s) 792, 1581
Mva1269I GAATGC 3 cut(s) 11, 27, 1678
MwoI GCNNNNNNNGC 7 cut(s) 170, 179, 605, 608, 692, 1418, 1550
NdeII GATC 7 cut(s) 337, 424, 481, 883, 1037, 1265, 1337
NlaIII CATG 5 cut(s) 164, 958, 1093, 1478, 1686
NlaIV GGNNCC 2 cut(s) 828, 933
NmuCI GTSAC 5 cut(s) 43, 710, 818, 1135, 1326
NspI RCATGY 1 cut(s) 164
PaeI GCATGC 1 cut(s) 164
PaeR7I CTCGAG 1 cut(s) 546
PagI TCATGA 1 cut(s) 1682
PceI AGGCCT 1 cut(s) 1298
PciSI GCTCTTC 1 cut(s) 126
PctI GAATGC 3 cut(s) 11, 27, 1678
PdmI GAANNNNTTC 1 cut(s) 1236
PfeI GAWTC 4 cut(s) 746, 842, 1093, 1186
PflMI CCANNNNNTGG 2 cut(s) 707, 1495
PleI GAGTC 4 cut(s) 557, 1026, 1333, 1634
PpsI GAGTC 4 cut(s) 557, 1026, 1333, 1634
Ppu21I YACGTR 2 cut(s) 689, 863
Psp124BI GAGCTC 1 cut(s) 1488
PspFI CCCAGC 1 cut(s) 192
PspN4I GGNNCC 2 cut(s) 828, 933
PspPI GGNCC 1 cut(s) 1657
PstNI CAGNNNCTG 3 cut(s) 37, 887, 1210
PsuI RGATCY 3 cut(s) 481, 883, 1337
PvuII CAGCTG 2 cut(s) 116, 1421
RsaI GTAC 4 cut(s) 786, 865, 1051, 1504
RsaNI GTAC 4 cut(s) 785, 864, 1050, 1503
RseI CAYNNNNRTG 2 cut(s) 288, 1634
SacI GAGCTC 1 cut(s) 1488
SapI GCTCTTC 1 cut(s) 126
Sau3AI GATC 7 cut(s) 337, 424, 481, 883, 1037, 1265, 1337
Sau96I GGNCC 1 cut(s) 1657
ScaI AGTACT 1 cut(s) 1504
SchI GAGTC 4 cut(s) 558, 1026, 1334, 1634
SduI GDGCHC 4 cut(s) 298, 593, 1384, 1488
SfaNI GCATC 1 cut(s) 1595
SfcI CTRYAG 1 cut(s) 573
Sfr274I CTCGAG 1 cut(s) 546
SinI GGWCC 1 cut(s) 1657
SlaI CTCGAG 1 cut(s) 546
SmiMI CAYNNNNRTG 2 cut(s) 288, 1634
SmlI CTYRAG 7 cut(s) 236, 407, 497, 527, 546, 1022, 1154
SmoI CTYRAG 7 cut(s) 236, 407, 497, 527, 546, 1022, 1154
SphI GCATGC 1 cut(s) 164
Sse9I AATT 7 cut(s) 146, 564, 792, 856, 893, 1559, 1581
SseBI AGGCCT 1 cut(s) 1298
SsiI CCGC 2 cut(s) 1106, 1509
SspI AATATT 1 cut(s) 1255
SspMI CTAG 4 cut(s) 1070, 1385, 1500, 1506
SstI GAGCTC 1 cut(s) 1488
StuI AGGCCT 1 cut(s) 1298
StyI CCWWGG 1 cut(s) 681
TaaI ACNGT 4 cut(s) 131, 1016, 1248, 1602
TaiI ACGT 2 cut(s) 691, 865
TaqI TCGA 2 cut(s) 322, 547
TaqII GACCGA 1 cut(s) 288
TasI AATT 7 cut(s) 146, 564, 792, 856, 893, 1559, 1581
TatI WGTACW 2 cut(s) 1049, 1502
TfiI GAWTC 4 cut(s) 746, 842, 1093, 1186
TscAI CASTG 3 cut(s) 70, 303, 1052
TseFI GTSAC 5 cut(s) 43, 710, 818, 1135, 1326
Tsp45I GTSAC 5 cut(s) 43, 710, 818, 1135, 1326
TspDTI ATGAA 9 cut(s) 84, 96, 159, 225, 1299, 1484, 1491, 1671, 1683
TspGWI ACGGA 1 cut(s) 1330
TspRI CASTG 3 cut(s) 70, 303, 1052
Van91I CCANNNNNTGG 2 cut(s) 707, 1495
Vha464I CTTAAG 1 cut(s) 527
VneI GTGCAC 1 cut(s) 1380
VpaK11BI GGWCC 1 cut(s) 1657
XapI RAATTY 3 cut(s) 856, 893, 1559
XbaI TCTAGA 1 cut(s) 1069
XceI RCATGY 1 cut(s) 164
XcmI CCANNNNNNNNNTGG 3 cut(s) 145, 770, 1052
XhoI CTCGAG 1 cut(s) 546
XmnI GAANNNNTTC 1 cut(s) 1236
XspI CTAG 4 cut(s) 1070, 1385, 1500, 1506
ZrmI AGTACT 1 cut(s) 1504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.