Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001130

Physical Location & Seq

Genomic Coordinates Reverse (-)

25766669 .. 25768983

Gene Structure 2315 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0247200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGACTACCCTTCTACATCTTCATCATGCAAAGAAAGCACATCAACACAGATTGTGTTCTTTGACATAGAAACAAATGTACCCAATAGAGTTGGACAAAGGTTCTGGGTATTAGAATTTGGGGCAATTGTTGTTTGCCCTCGAAAGCTTGTCGAGCTAGACAGCTATAGCAGCCTCATTAGGCCAGCAGATTTGTCTGCAGTACCCTCAAGGTCCGGTCGATGTGACGGGATCACTAAGGATGTTGTTGCAAATGCACCTACGTTTGAGCAAGTTGCTGATAAGATATTCAGCATTTTGAATGGCAGAATTTGGGCAGGTCATAACATCCAGCGGTTCGATTGTGCTCGCATTAAGGAGGCGTTTTCGGACATTGGTAGGCCTGCGCCTACTCCTGTTGGGATGATAGACTCTCTAGGGGTACTAACTGAGAAGTTTGGCAGAAGAGCTGGCAATATGAAGATGGCATCATTGGCAACTTACTTCAAGCTTGGGCAGCAAAAGCACAGGAGCCTTGAAGATGTTAGGATGAACCTGGAGGTCCTCAAGAACTGTGCAACTGTGCTGTTTCTGGAAGCAACCCTTCCTAGCGTGTTAGATGGCAACTGGCGTGGCTCTCCAACAGTTACAACTCGGAGTAGAAGTAATGGGAAATTGCCATGCCGAGATGAAACAACAAGCCGGAAGTCTCCCCCAACAACTGCTTTTATCGGATATCAAAGAGCAGTTCCATATACTCCAAGGGGGAGTTTGGGAAAGGTGACAGAAAGGGTAAAGAATCTATTGTGTAGAGCACAAGGAAACCAGCCTCTTAGTAACATATTGAAGCATTCTCATTCACTACTCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0030674 GO:0031410 GO:0031982 GO:0032879 GO:0032880 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0060090 GO:0060178 GO:0060341 GO:0065007 GO:0097708 GO:1903827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FPP

Protein Analysis

283

Amino Acids

31.32

Weight (kDa)

9.73

Isoelectric Point (pI)

42.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_T	PF00929	19 - 182	6.6e-27	Exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05270 AT3G05270 AT3G05270
fragaria_vesca	FvH4_1g25530 FvH4_1g25530 FvH4_1g25530 FvH4_1g25530 FvH4_1g25530 FvH4_1g25530 FvH4_1g25530 FvH4_1g25530 FvH4_2g26980 FvH4_2g26980 FvH4_2g26980 FvH4_2g26980 FvH4_2g26980
malus_domestica	MD08G1162500.v1.1 MD15G1138800.v1.1 MD15G1348000.v1.1
prunus_persica	Prupe.1G495600_v2.0.a1 Prupe.1G495600_v2.0.a1 Prupe.1G495600_v2.0.a1 Prupe.1G495600_v2.0.a1 Prupe.1G495600_v2.0.a1 Prupe.1G495600_v2.0.a1 Prupe.1G495600_v2.0.a1 Prupe.4G281900_v2.0.a1 Prupe.4G281900_v2.0.a1 Prupe.4G281900_v2.0.a1 Prupe.4G281900_v2.0.a1
pyrus_communis	pycom08g14040 pycom15g12550 pycom15g31180
rosa_chinensis	RchiOBHm_Chr2g0123661 RchiOBHm_Chr6g0295851
rosa_laevigata	RLG00000011762 RLG00000018767
rosa_multiflora	Rmu_sc0003139.1_g000002 Rmu_sc0004915.1_g000004 Rmu_sc0004915.1_g000005
rosa_roxburghii	Rroxscaffold_2G00120460 Rroxscaffold_7G00172110
rosa_rugosa	Rorug02G0247200 Rorug06G0254500 Rorug06G0254600 Rorug06G0254600 Rorug06G0254700 Rorug06G0254800
rosa_samantha	Rh2AG306200 Rh2BG314400 Rh2CG292600 Rh2DG329900 Rh6AG368300 Rh6BG376100 Rh6CG382200 Rh6DG368800
rosa_wichuraiana	Rw2G024550 Rw6G032110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	308
AciI	CCGC	1 cut(s)	334
AclWI	GGATC	1 cut(s)	239
AcsI	RAATTY	2 cut(s)	116, 309
AfaI	GTAC	3 cut(s)	81, 204, 423
AgsI	TTSAA	4 cut(s)	301, 487, 518, 826
AjnI	CCWGG	1 cut(s)	534
AluBI	AGCT	5 cut(s)	148, 157, 165, 449, 490
AluI	AGCT	5 cut(s)	148, 157, 165, 449, 490
Alw21I	GWGCWC	2 cut(s)	349, 796
Alw26I	GTCTC	1 cut(s)	693
AlwI	GGATC	1 cut(s)	239
AoxI	GGCC	2 cut(s)	182, 380
ApeKI	GCWGC	2 cut(s)	171, 496
ApoI	RAATTY	2 cut(s)	116, 309
AspLEI	GCGC	1 cut(s)	388
AspS9I	GGNCC	2 cut(s)	213, 541
AsuHPI	GGTGA	1 cut(s)	772
AvaII	GGWCC	2 cut(s)	213, 541
BaeI	ACNNNNGTAYC	2 cut(s)	63, 96
Bbv12I	GWGCWC	2 cut(s)	349, 796
BbvI	GCAGC	2 cut(s)	183, 508
BccI	CCATC	2 cut(s)	457, 593
BciT130I	CCWGG	1 cut(s)	536
BcoDI	GTCTC	1 cut(s)	693
BfaI	CTAG	3 cut(s)	158, 416, 588
BfmI	CTRYAG	2 cut(s)	166, 198
BfuAI	ACCTGC	1 cut(s)	308
BisI	GCNGC	2 cut(s)	172, 497
BlsI	GCNGC	2 cut(s)	173, 498
Bme1390I	CCNGG	1 cut(s)	536
Bme18I	GGWCC	2 cut(s)	213, 541
BmgT120I	GGNCC	2 cut(s)	213, 541
BmiI	GGNNCC	1 cut(s)	512
BmrFI	CCNGG	1 cut(s)	536
BmsI	GCATC	1 cut(s)	476
BpmI	CTGGAG	1 cut(s)	557
BpuEI	CTTGAG	2 cut(s)	193, 530
BsaJI	CCNNGG	1 cut(s)	740
BsaWI	WCCGGW	2 cut(s)	215, 846
BsaXI	ACNNNNNCTCC	2 cut(s)	628, 658
Bse1I	ACTGG	1 cut(s)	611
BseBI	CCWGG	1 cut(s)	536
BseDI	CCNNGG	1 cut(s)	740
BseGI	GGATG	4 cut(s)	247, 327, 408, 534
BseMII	CTCAG	1 cut(s)	420
BseNI	ACTGG	1 cut(s)	611
BseXI	GCAGC	2 cut(s)	183, 508
Bsh1285I	CGRYCG	1 cut(s)	220
BshFI	GGCC	2 cut(s)	184, 382
BsiEI	CGRYCG	1 cut(s)	220
BsiHKAI	GWGCWC	2 cut(s)	349, 796
BsiSI	CCGG	3 cut(s)	216, 682, 847
BsmAI	GTCTC	1 cut(s)	693
BsmI	GAATGC	1 cut(s)	829
BsnI	GGCC	2 cut(s)	184, 382
Bsp1286I	GDGCHC	2 cut(s)	349, 796
Bsp143I	GATC	1 cut(s)	231
BspACI	CCGC	1 cut(s)	334
BspANI	GGCC	2 cut(s)	184, 382
BspCNI	CTCAG	1 cut(s)	421
BspLI	GGNNCC	1 cut(s)	512
BspMAI	CTGCAG	1 cut(s)	202
BspMI	ACCTGC	1 cut(s)	308
BspPI	GGATC	1 cut(s)	239
BspQI	GCTCTTC	1 cut(s)	439
BsrI	ACTGG	1 cut(s)	611
BssECI	CCNNGG	1 cut(s)	740
BssMI	GATC	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	740
Bst2UI	CCWGG	1 cut(s)	536
Bst4CI	ACNGT	3 cut(s)	554, 562, 625
Bst6I	CTCTTC	1 cut(s)	439
BstC8I	GCNNGC	4 cut(s)	186, 349, 384, 451
BstDEI	CTNAG	3 cut(s)	237, 429, 812
BstF5I	GGATG	4 cut(s)	247, 327, 408, 534
BstHHI	GCGC	1 cut(s)	388
BstKTI	GATC	1 cut(s)	234
BstMAI	GTCTC	1 cut(s)	693
BstMBI	GATC	1 cut(s)	231
BstMCI	CGRYCG	1 cut(s)	220
BstMWI	GCNNNNNNNGC	6 cut(s)	36, 154, 171, 473, 496, 502
BstNI	CCWGG	1 cut(s)	536
BstSCI	CCNGG	1 cut(s)	534
BstSFI	CTRYAG	2 cut(s)	166, 198
BstV1I	GCAGC	2 cut(s)	183, 508
BsuRI	GGCC	2 cut(s)	184, 382
BtsCI	GGATG	4 cut(s)	247, 327, 408, 534
BveI	ACCTGC	1 cut(s)	308
Cac8I	GCNNGC	4 cut(s)	186, 349, 384, 451
CfoI	GCGC	1 cut(s)	388
Cfr13I	GGNCC	2 cut(s)	213, 541
Csp6I	GTAC	3 cut(s)	80, 203, 422
CspCI	CAANNNNNGTGG	2 cut(s)	592, 627
CviAII	CATG	2 cut(s)	27, 660
CviQI	GTAC	3 cut(s)	80, 203, 422
DdeI	CTNAG	3 cut(s)	237, 429, 812
DpnI	GATC	1 cut(s)	233
DpnII	GATC	1 cut(s)	231
Eam1104I	CTCTTC	1 cut(s)	439
EarI	CTCTTC	1 cut(s)	439
Eco130I	CCWWGG	1 cut(s)	740
Eco147I	AGGCCT	1 cut(s)	382
Eco32I	GATATC	1 cut(s)	716
Eco47I	GGWCC	2 cut(s)	213, 541
EcoO109I	RGGNCCY	1 cut(s)	541
EcoRII	CCWGG	1 cut(s)	534
EcoRV	GATATC	1 cut(s)	716
EcoT14I	CCWWGG	1 cut(s)	740
ErhI	CCWWGG	1 cut(s)	740
FaeI	CATG	2 cut(s)	30, 663
FaiI	YATR	9 cut(s)	28, 68, 168, 324, 458, 661, 733, 735, 821
FalI	AAGNNNNNCTT	2 cut(s)	567, 599
FatI	CATG	2 cut(s)	26, 659
Fnu4HI	GCNGC	2 cut(s)	172, 497
FokI	GGATG	4 cut(s)	254, 314, 415, 541
Fsp4HI	GCNGC	2 cut(s)	172, 497
FspBI	CTAG	3 cut(s)	158, 416, 588
GlaI	GCGC	1 cut(s)	387
GluI	GCNGC	2 cut(s)	172, 497
GsuI	CTGGAG	1 cut(s)	557
HaeIII	GGCC	2 cut(s)	184, 382
HapII	CCGG	3 cut(s)	216, 682, 847
HhaI	GCGC	1 cut(s)	388
Hin1II	CATG	2 cut(s)	30, 663
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HindIII	AAGCTT	2 cut(s)	146, 488
HinfI	GANTC	2 cut(s)	410, 778
HpaII	CCGG	3 cut(s)	216, 682, 847
HphI	GGTGA	1 cut(s)	772
Hpy188I	TCNGA	3 cut(s)	370, 636, 713
Hpy188III	TCNNGA	2 cut(s)	547, 572
HpyAV	CCTTC	2 cut(s)	21, 593
HpyCH4III	ACNGT	3 cut(s)	554, 562, 625
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	5 cut(s)	30, 200, 251, 257, 557
HpyF10VI	GCNNNNNNNGC	6 cut(s)	36, 154, 171, 473, 496, 502
HpyF3I	CTNAG	3 cut(s)	237, 429, 812
HpySE526I	ACGT	1 cut(s)	263
Hsp92II	CATG	2 cut(s)	30, 663
HspAI	GCGC	1 cut(s)	386
Kzo9I	GATC	1 cut(s)	231
LguI	GCTCTTC	1 cut(s)	439
LmnI	GCTCC	1 cut(s)	510
Lsp1109I	GCAGC	2 cut(s)	183, 508
LweI	GCATC	1 cut(s)	476
MaeI	CTAG	3 cut(s)	158, 416, 588
MaeII	ACGT	1 cut(s)	263
MaeIII	GTNAC	4 cut(s)	224, 625, 760, 815
MalI	GATC	1 cut(s)	233
MboI	GATC	1 cut(s)	231
MboII	GAAGA	4 cut(s)	12, 456, 472, 530
MfeI	CAATTG	1 cut(s)	126
MhlI	GDGCHC	2 cut(s)	349, 796
MluCI	AATT	4 cut(s)	116, 126, 309, 653
MlyI	GAGTC	1 cut(s)	404
MmeI	TCCRAC	2 cut(s)	73, 644
MnlI	CCTC	7 cut(s)	150, 185, 217, 352, 532, 554, 819
MseI	TTAA	1 cut(s)	354
MspA1I	CMGCKG	1 cut(s)	334
MspI	CCGG	3 cut(s)	216, 682, 847
MspR9I	CCNGG	1 cut(s)	536
MunI	CAATTG	1 cut(s)	126
Mva1269I	GAATGC	1 cut(s)	829
MvaI	CCWGG	1 cut(s)	536
MwoI	GCNNNNNNNGC	6 cut(s)	36, 154, 171, 473, 496, 502
NdeII	GATC	1 cut(s)	231
NlaIII	CATG	2 cut(s)	30, 663
NlaIV	GGNNCC	1 cut(s)	512
NmeAIII	GCCGAG	1 cut(s)	689
NmuCI	GTSAC	2 cut(s)	224, 760
PceI	AGGCCT	1 cut(s)	382
PciSI	GCTCTTC	1 cut(s)	439
PctI	GAATGC	1 cut(s)	829
PfeI	GAWTC	1 cut(s)	778
PkrI	GCNGC	2 cut(s)	173, 498
PleI	GAGTC	1 cut(s)	404
PpsI	GAGTC	1 cut(s)	404
PpuMI	RGGWCCY	1 cut(s)	541
Psp5II	RGGWCCY	1 cut(s)	541
Psp6I	CCWGG	1 cut(s)	534
PspGI	CCWGG	1 cut(s)	534
PspN4I	GGNNCC	1 cut(s)	512
PspPI	GGNCC	2 cut(s)	213, 541
PspPPI	RGGWCCY	1 cut(s)	541
PstI	CTGCAG	1 cut(s)	202
RsaI	GTAC	3 cut(s)	81, 204, 423
RsaNI	GTAC	3 cut(s)	80, 203, 422
SapI	GCTCTTC	1 cut(s)	439
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	2 cut(s)	172, 497
Sau3AI	GATC	1 cut(s)	231
Sau96I	GGNCC	2 cut(s)	213, 541
SchI	GAGTC	1 cut(s)	404
ScrFI	CCNGG	1 cut(s)	536
SduI	GDGCHC	2 cut(s)	349, 796
SfaNI	GCATC	1 cut(s)	476
SfcI	CTRYAG	2 cut(s)	166, 198
SinI	GGWCC	2 cut(s)	213, 541
SmlI	CTYRAG	2 cut(s)	208, 545
SmoI	CTYRAG	2 cut(s)	208, 545
Sse9I	AATT	4 cut(s)	116, 126, 309, 653
SseBI	AGGCCT	1 cut(s)	382
SsiI	CCGC	1 cut(s)	334
SspMI	CTAG	3 cut(s)	158, 416, 588
StuI	AGGCCT	1 cut(s)	382
StyD4I	CCNGG	1 cut(s)	534
StyI	CCWWGG	1 cut(s)	740
TaaI	ACNGT	3 cut(s)	554, 562, 625
TaiI	ACGT	1 cut(s)	266
TaqI	TCGA	4 cut(s)	142, 153, 220, 339
TasI	AATT	4 cut(s)	116, 126, 309, 653
TfiI	GAWTC	1 cut(s)	778
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TseFI	GTSAC	2 cut(s)	224, 760
TseI	GCWGC	2 cut(s)	171, 496
Tsp45I	GTSAC	2 cut(s)	224, 760
TspDTI	ATGAA	4 cut(s)	12, 473, 545, 684
VpaK11BI	GGWCC	2 cut(s)	213, 541
XapI	RAATTY	2 cut(s)	116, 309
XspI	CTAG	3 cut(s)	158, 416, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.