Rorug06G0254800

Filament-like plant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001130
Physical Location & Seq
Reverse (-)
40118575 .. 40119102
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0254800.1

Sequence Viewer

Length: 528 bp
ATGGATGCGAAAGTGGTAGGGGGCACAGGTGTACTGTCATGGCGGCTGACTGGTTTTTACGGTTATGCTCGGACTGCGGAGAGAGAACGATCATGGCAGCTACTCCGTGAACTGTTCGATCTTGATTCCTTACCGTGGATTGTGATTGGTGATTTTAATGAGATACTGAATAATGGGGAGAAGATTAATGGGCCGCTTAGGGCGGAATGGCAGATGCGAGGCTTCAGGGAAGCGCTCGGATATGGGGATCTGCTCGACCTAGGGTTCCATGGATCTTTGGCTACGTGGTGGAACTCAGAAACTCAGTTGCAACTGGATAGGGCGGTTTGTATGCCATCTTGGTTTGACCTATTTGGGCATTCTAAGCTGGTTCATTTGTTGCCTTCTGATTCAGACCATGTTCCTATTTTGTTACGGGCTAGTTCGGTTCCTCTGGTGTCCAGACCAAAGTCTTATCGGTTCAAGTTTGAACATACTGGTACAGCATCCGGATTGTGCTGGGGTTGTGGAGGAGGCTTGGCGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FPP

Protein Analysis

175

Amino Acids

19.65

Weight (kDa)

5.94

Isoelectric Point (pI)

29.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 14 - 118 2.5e-07 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 488
AciI CCGC 6 cut(s) 43, 77, 194, 203, 323, 521
AclWI GGATC 2 cut(s) 255, 280
AcuI CTGAAG 1 cut(s) 208
AfaI GTAC 2 cut(s) 33, 481
AfeI AGCGCT 1 cut(s) 234
AfiI CCNNNNNNNGG 1 cut(s) 135
AgsI TTSAA 2 cut(s) 463, 470
AluBI AGCT 2 cut(s) 100, 367
AluI AGCT 2 cut(s) 100, 367
AlwI GGATC 2 cut(s) 255, 280
Aor13HI TCCGGA 1 cut(s) 488
Aor51HI AGCGCT 1 cut(s) 234
AoxI GGCC 1 cut(s) 191
ApeKI GCWGC 1 cut(s) 97
AseI ATTAAT 1 cut(s) 186
AspA2I CCTAGG 1 cut(s) 259
AspLEI GCGC 1 cut(s) 235
AspS9I GGNCC 1 cut(s) 191
AsuHPI GGTGA 1 cut(s) 161
AvrII CCTAGG 1 cut(s) 259
BaeGI GKGCMC 1 cut(s) 26
BbvI GCAGC 1 cut(s) 109
BccI CCATC 1 cut(s) 343
BfaI CTAG 2 cut(s) 260, 420
BfoI RGCGCY 1 cut(s) 236
BisI GCNGC 3 cut(s) 44, 98, 194
BlnI CCTAGG 1 cut(s) 259
BlsI GCNGC 3 cut(s) 45, 99, 195
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 2 cut(s) 266, 429
BmsI GCATC 2 cut(s) 204, 494
BoxI GACNNNNGTC 1 cut(s) 448
Bpu10I CCTNAGC 1 cut(s) 197
BsaAI YACGTR 1 cut(s) 285
BsaJI CCNNGG 3 cut(s) 134, 259, 268
BsaWI WCCGGW 1 cut(s) 488
Bsc4I CCNNNNNNNGG 1 cut(s) 135
Bse1I ACTGG 3 cut(s) 55, 318, 481
BseAI TCCGGA 1 cut(s) 488
BseDI CCNNGG 3 cut(s) 134, 259, 268
BseGI GGATG 2 cut(s) 10, 485
BseLI CCNNNNNNNGG 1 cut(s) 135
BseMII CTCAG 2 cut(s) 309, 317
BseNI ACTGG 3 cut(s) 55, 318, 481
BseRI GAGGAG 1 cut(s) 525
BseSI GKGCMC 1 cut(s) 26
BseXI GCAGC 1 cut(s) 109
BseYI CCCAGC 1 cut(s) 498
BshFI GGCC 1 cut(s) 193
BsiSI CCGG 1 cut(s) 489
BslI CCNNNNNNNGG 1 cut(s) 135
BsmI GAATGC 1 cut(s) 358
BsnI GGCC 1 cut(s) 193
Bsp1286I GDGCHC 1 cut(s) 26
Bsp13I TCCGGA 1 cut(s) 488
Bsp143I GATC 4 cut(s) 89, 118, 247, 272
Bsp19I CCATGG 1 cut(s) 268
BspACI CCGC 6 cut(s) 43, 77, 194, 203, 323, 521
BspANI GGCC 1 cut(s) 193
BspCNI CTCAG 2 cut(s) 308, 316
BspEI TCCGGA 1 cut(s) 488
BspLI GGNNCC 2 cut(s) 266, 429
BspPI GGATC 2 cut(s) 255, 280
BsrI ACTGG 3 cut(s) 55, 318, 481
BssECI CCNNGG 3 cut(s) 134, 259, 268
BssMI GATC 4 cut(s) 89, 118, 247, 272
BssT1I CCWWGG 2 cut(s) 259, 268
Bst4CI ACNGT 4 cut(s) 36, 62, 114, 135
BstBAI YACGTR 1 cut(s) 285
BstDEI CTNAG 4 cut(s) 197, 295, 303, 363
BstDSI CCRYGG 2 cut(s) 134, 268
BstF5I GGATG 2 cut(s) 10, 485
BstH2I RGCGCY 1 cut(s) 236
BstHHI GCGC 1 cut(s) 235
BstKTI GATC 4 cut(s) 92, 121, 250, 275
BstMBI GATC 4 cut(s) 89, 118, 247, 272
BstMWI GCNNNNNNNGC 2 cut(s) 74, 364
BstPAI GACNNNNGTC 1 cut(s) 448
BstSLI GKGCMC 1 cut(s) 26
BstV1I GCAGC 1 cut(s) 109
BstX2I RGATCY 2 cut(s) 247, 272
BstYI RGATCY 2 cut(s) 247, 272
BsuRI GGCC 1 cut(s) 193
BtgI CCRYGG 2 cut(s) 134, 268
BtsCI GGATG 2 cut(s) 10, 485
CfoI GCGC 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 191
Csp6I GTAC 2 cut(s) 32, 480
CviAII CATG 4 cut(s) 39, 93, 269, 398
CviJI RGCY 8 cut(s) 46, 100, 193, 222, 281, 367, 419, 516
CviKI_1 RGCY 8 cut(s) 46, 100, 193, 222, 281, 367, 419, 516
CviQI GTAC 2 cut(s) 32, 480
DdeI CTNAG 4 cut(s) 197, 295, 303, 363
DpnI GATC 4 cut(s) 91, 120, 249, 274
DpnII GATC 4 cut(s) 89, 118, 247, 272
EciI GGCGGA 1 cut(s) 218
Eco130I CCWWGG 2 cut(s) 259, 268
Eco47III AGCGCT 1 cut(s) 234
Eco57I CTGAAG 1 cut(s) 208
EcoT14I CCWWGG 2 cut(s) 259, 268
ErhI CCWWGG 2 cut(s) 259, 268
FaeI CATG 4 cut(s) 42, 96, 272, 401
FaiI YATR 8 cut(s) 40, 66, 94, 243, 270, 332, 399, 474
FatI CATG 4 cut(s) 38, 92, 268, 397
Fnu4HI GCNGC 3 cut(s) 44, 98, 194
FokI GGATG 2 cut(s) 17, 472
Fsp4HI GCNGC 3 cut(s) 44, 98, 194
FspBI CTAG 2 cut(s) 260, 420
GlaI GCGC 1 cut(s) 234
GluI GCNGC 3 cut(s) 44, 98, 194
GsaI CCCAGC 1 cut(s) 502
HaeII RGCGCY 1 cut(s) 236
HaeIII GGCC 1 cut(s) 193
HapII CCGG 1 cut(s) 489
HhaI GCGC 1 cut(s) 235
Hin1II CATG 4 cut(s) 42, 96, 272, 401
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HinfI GANTC 2 cut(s) 125, 389
HpaII CCGG 1 cut(s) 489
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 2 cut(s) 32, 110
Hpy188I TCNGA 5 cut(s) 72, 239, 298, 388, 394
Hpy188III TCNNGA 3 cut(s) 122, 441, 489
Hpy8I GTNNAC 2 cut(s) 32, 110
HpyAV CCTTC 1 cut(s) 393
HpyCH4III ACNGT 4 cut(s) 36, 62, 114, 135
HpyCH4IV ACGT 1 cut(s) 284
HpyCH4V TGCA 1 cut(s) 310
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 364
HpyF3I CTNAG 4 cut(s) 197, 295, 303, 363
HpySE526I ACGT 1 cut(s) 284
Hsp92II CATG 4 cut(s) 42, 96, 272, 401
HspAI GCGC 1 cut(s) 233
Kpn2I TCCGGA 1 cut(s) 488
Kzo9I GATC 4 cut(s) 89, 118, 247, 272
Lsp1109I GCAGC 1 cut(s) 109
LweI GCATC 2 cut(s) 204, 494
MaeI CTAG 2 cut(s) 260, 420
MaeII ACGT 1 cut(s) 284
MaeIII GTNAC 1 cut(s) 411
MalI GATC 4 cut(s) 91, 120, 249, 274
MboI GATC 4 cut(s) 89, 118, 247, 272
MboII GAAGA 1 cut(s) 193
MflI RGATCY 2 cut(s) 247, 272
MhlI GDGCHC 1 cut(s) 26
MnlI CCTC 4 cut(s) 212, 441, 503, 506
MroI TCCGGA 1 cut(s) 488
MseI TTAA 2 cut(s) 156, 186
MspI CCGG 1 cut(s) 489
Mva1269I GAATGC 1 cut(s) 358
MwoI GCNNNNNNNGC 2 cut(s) 74, 364
NcoI CCATGG 1 cut(s) 268
NdeII GATC 4 cut(s) 89, 118, 247, 272
NlaIII CATG 4 cut(s) 42, 96, 272, 401
NlaIV GGNNCC 2 cut(s) 266, 429
PctI GAATGC 1 cut(s) 358
PfeI GAWTC 2 cut(s) 125, 389
PkrI GCNGC 3 cut(s) 45, 99, 195
Ppu21I YACGTR 1 cut(s) 285
PshAI GACNNNNGTC 1 cut(s) 448
PshBI ATTAAT 1 cut(s) 186
PspFI CCCAGC 1 cut(s) 498
PspN4I GGNNCC 2 cut(s) 266, 429
PspPI GGNCC 1 cut(s) 191
PsuI RGATCY 2 cut(s) 247, 272
RsaI GTAC 2 cut(s) 33, 481
RsaNI GTAC 2 cut(s) 32, 480
SaqAI TTAA 2 cut(s) 156, 186
SatI GCNGC 3 cut(s) 44, 98, 194
Sau3AI GATC 4 cut(s) 89, 118, 247, 272
Sau96I GGNCC 1 cut(s) 191
SduI GDGCHC 1 cut(s) 26
SetI ASST 6 cut(s) 31, 102, 261, 287, 351, 369
SfaNI GCATC 2 cut(s) 204, 494
SsiI CCGC 6 cut(s) 43, 77, 194, 203, 323, 521
SspMI CTAG 2 cut(s) 260, 420
StyI CCWWGG 2 cut(s) 259, 268
TaaI ACNGT 4 cut(s) 36, 62, 114, 135
TaiI ACGT 1 cut(s) 287
TaqI TCGA 2 cut(s) 117, 255
TatI WGTACW 1 cut(s) 31
TauI GCSGC 2 cut(s) 46, 196
TfiI GAWTC 2 cut(s) 125, 389
Tru1I TTAA 2 cut(s) 156, 186
Tru9I TTAA 2 cut(s) 156, 186
TseI GCWGC 1 cut(s) 97
TspDTI ATGAA 1 cut(s) 362
TspGWI ACGGA 1 cut(s) 95
VspI ATTAAT 1 cut(s) 186
XmaJI CCTAGG 1 cut(s) 259
XspI CTAG 2 cut(s) 260, 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.