Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004915.1

Orthogroup ID

OG0001130

Physical Location & Seq

Genomic Coordinates Reverse (-)

39911 .. 43276

Gene Structure 3366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004915.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1692 bp

atggataggcggagtcggctgtggcaaaggaaatcatcagacaagagttctggtgagactgagagttcgggatcgatatcttctcattctgaaagattttcggatgatcaggcattcccaactcatagcattcagtcgctggaagtcacttctaaagctccacgcagtgatgaagaacttaatgaaagtgttgggactttgaaggagaaactatcagctgctcttcttgacagtaacgccaaagatgaattggtaaagcagcatgctaaagttgcagaagaagctgtctcaggctgggagaagtctgaaaatgaagtgttgggcttaaaacagcaacttgaggctacaaatcagaaaaactcagctcttaaagaccgagttggtcatcttgatggagcactgaaagaatgtgtgaggcagcttcgacaggcaagagaagatcaagaccggaatactaatgaggttgttgctaagaaaactcgtgaatgggatagttcaaagtccatacttgagagccagcttgctgatctccaagcacaacttcaagctgctaaaactgaagctgctgcctctattggtaaggatctccggttaaagcttgaggctactgaaaaagagaactctgctcttaagcttagtcttcgctctcgagtcaaggagcttgaaattgcaactatagagagggatttgagcacccaagctgctgaagcagcgagtaagcaacatttagagagcataaaaaaggttgttaagcttgaagctgagtgccgtaggctaaacgccttggcacgtaaagcactaccagataatggtcacaaatccttttctacatcctcagtttatgtagaatcctttatagatagccaatcagatagtggggagagggtactggcaattgagttggatacagataaagcgagtgacttggagccaagtgaatgtgattcaagccagtcaaattcacgtacatctgctcgtatcacagatcctgataaatttaataaagaaaaaggtgttggaaaaaatctaatggttccttcagtagatatcaatctcatggatgattttcttgaaatggaaaggtttgctgcaacgccagttacaaaaaataagaactgttaccttgaggcaggactcagatcaaaccagtgtactgctggaaaaaaccttctagaaactgaacttgaaaccatgattcaaaggactgcggaactggaggggaagttagagaagatggtgacagaaaaagtggaacttgagatgactatgactgagtgcgaaaaggagattcagacattaaaaagtcagctactggaggctgatttgaagttggaagaccttcaaacacagttgaatattgcaaatggatcaaggtatgcttcagatgaagaagtaaaggcctgtcaaacaatgagagaagtggctgagtcacaactaagatccgttcaaactgaacttgactgcttgattttaaaagtcggtgcactagaggaagatgtctcaaaggagcgagctttatcagctgaaaatgaggccaaatgccagaaagttgagaatgagctattgataaattacatcaataggagttcaccagacgaaccacctccaaagcatccgccccttgttgggaatggtttaggcccatctaacaagttaattccgtcccatcttgaaccgcataaagatccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0030674 GO:0031410 GO:0031982 GO:0032879 GO:0032880 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0060090 GO:0060178 GO:0060341 GO:0065007 GO:0097708 GO:1903827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FPP

Protein Analysis

563

Amino Acids

62.56

Weight (kDa)

5.14

Isoelectric Point (pI)

48.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05270 AT3G05270 AT3G05270
fragaria_vesca	FvH4_1g25530 FvH4_1g25530 FvH4_1g25530 FvH4_1g25530 FvH4_1g25530 FvH4_1g25530 FvH4_1g25530 FvH4_1g25530 FvH4_2g26980 FvH4_2g26980 FvH4_2g26980 FvH4_2g26980 FvH4_2g26980
malus_domestica	MD08G1162500.v1.1 MD15G1138800.v1.1 MD15G1348000.v1.1
prunus_persica	Prupe.1G495600_v2.0.a1 Prupe.1G495600_v2.0.a1 Prupe.1G495600_v2.0.a1 Prupe.1G495600_v2.0.a1 Prupe.1G495600_v2.0.a1 Prupe.1G495600_v2.0.a1 Prupe.1G495600_v2.0.a1 Prupe.4G281900_v2.0.a1 Prupe.4G281900_v2.0.a1 Prupe.4G281900_v2.0.a1 Prupe.4G281900_v2.0.a1
pyrus_communis	pycom08g14040 pycom15g12550 pycom15g31180
rosa_chinensis	RchiOBHm_Chr2g0123661 RchiOBHm_Chr6g0295851
rosa_laevigata	RLG00000011762 RLG00000018767
rosa_multiflora	Rmu_sc0003139.1_g000002 Rmu_sc0004915.1_g000004 Rmu_sc0004915.1_g000005
rosa_roxburghii	Rroxscaffold_2G00120460 Rroxscaffold_7G00172110
rosa_rugosa	Rorug02G0247200 Rorug06G0254500 Rorug06G0254600 Rorug06G0254600 Rorug06G0254700 Rorug06G0254800
rosa_samantha	Rh2AG306200 Rh2BG314400 Rh2CG292600 Rh2DG329900 Rh6AG368300 Rh6BG376100 Rh6CG382200 Rh6DG368800
rosa_wichuraiana	Rw2G024550 Rw6G032110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	809
AciI	CCGC	4 cut(s)	10, 1208, 1616, 1676
AclWI	GGATC	6 cut(s)	79, 591, 980, 1375, 1434, 1679
AcsI	RAATTY	2 cut(s)	958, 995
AcuI	CTGAAG	4 cut(s)	579, 726, 1023, 1365
AdeI	CACNNNGTG	1 cut(s)	167
AfaI	GTAC	3 cut(s)	888, 967, 1153
AfiI	CCNNNNNNNGG	3 cut(s)	809, 1625, 1626
AflII	CTTAAG	1 cut(s)	629
AjuI	GAANNNNNNNTTGG	4 cut(s)	525, 557, 999, 1031
Alw21I	GWGCWC	3 cut(s)	400, 695, 1486
Alw26I	GTCTC	3 cut(s)	50, 292, 1504
Alw44I	GTGCAC	1 cut(s)	1482
AlwI	GGATC	6 cut(s)	79, 591, 980, 1375, 1434, 1679
AlwNI	CAGNNNCTG	3 cut(s)	139, 989, 1312
Ama87I	CYCGRG	1 cut(s)	648
AoxI	GGCC	3 cut(s)	1398, 1533, 1639
ApaLI	GTGCAC	1 cut(s)	1482
ApeKI	GCWGC	9 cut(s)	218, 259, 418, 548, 563, 566, 701, 710, 1088
ApoI	RAATTY	2 cut(s)	958, 995
ArsI	GACNNNNNNTTYG	2 cut(s)	49, 81
Asp700I	GAANNNNTTC	1 cut(s)	1338
AspS9I	GGNCC	1 cut(s)	1640
AsuHPI	GGTGA	3 cut(s)	65, 1249, 1581
AvaI	CYCGRG	1 cut(s)	648
BaeGI	GKGCMC	1 cut(s)	1486
BauI	CACGAG	1 cut(s)	480
BbsI	GAAGAC	2 cut(s)	632, 1341
Bbv12I	GWGCWC	3 cut(s)	400, 695, 1486
BbvI	GCAGC	9 cut(s)	205, 271, 430, 535, 550, 553, 688, 722, 1075
BccI	CCATC	4 cut(s)	386, 1228, 1651, 1674
BceAI	ACGGC	1 cut(s)	753
BciVI	GTATCC	1 cut(s)	898
BclI	TGATCA	1 cut(s)	106
BcoDI	GTCTC	3 cut(s)	50, 292, 1504
BfaI	CTAG	2 cut(s)	1172, 1487
BfmI	CTRYAG	1 cut(s)	675
BfrI	CTTAAG	1 cut(s)	629
BfuI	GTATCC	1 cut(s)	898
BisI	GCNGC	9 cut(s)	219, 260, 419, 549, 564, 567, 702, 711, 1089
BlsI	GCNGC	9 cut(s)	220, 261, 420, 550, 565, 568, 703, 712, 1090
BmeT110I	CYCGRG	1 cut(s)	648
BmgT120I	GGNCC	1 cut(s)	1640
BmiI	GGNNCC	2 cut(s)	930, 1035
BmsI	GCATC	1 cut(s)	1621
BpiI	GAAGAC	2 cut(s)	632, 1341
BpmI	CTGGAG	2 cut(s)	1235, 1334
BpuEI	CTTGAG	5 cut(s)	359, 530, 620, 1145, 1277
Bsa29I	ATCGAT	1 cut(s)	74
BsaAI	YACGTR	2 cut(s)	791, 965
BsaBI	GATNNNNATC	2 cut(s)	76, 1050
BsaJI	CCNNGG	1 cut(s)	783
BsaWI	WCCGGW	2 cut(s)	447, 588
BsaXI	ACNNNNNCTCC	2 cut(s)	1208, 1238
Bsc4I	CCNNNNNNNGG	3 cut(s)	809, 1625, 1626
Bse1I	ACTGG	6 cut(s)	894, 952, 1097, 1147, 1218, 1317
Bse8I	GATNNNNATC	2 cut(s)	76, 1050
BseCI	ATCGAT	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	783
BseGI	GGATG	4 cut(s)	109, 830, 1066, 1612
BseJI	GATNNNNATC	2 cut(s)	76, 1050
BseLI	CCNNNNNNNGG	3 cut(s)	809, 1625, 1626
BseMII	CTCAG	8 cut(s)	51, 303, 375, 753, 849, 1150, 1263, 1416
BseNI	ACTGG	6 cut(s)	894, 952, 1097, 1147, 1218, 1317
BseSI	GKGCMC	1 cut(s)	1486
BseXI	GCAGC	9 cut(s)	205, 271, 430, 535, 550, 553, 688, 722, 1075
BseYI	CCCAGC	1 cut(s)	294
BshFI	GGCC	3 cut(s)	1400, 1535, 1641
BshVI	ATCGAT	1 cut(s)	74
BsiHKAI	GWGCWC	3 cut(s)	400, 695, 1486
BsiHKCI	CYCGRG	1 cut(s)	648
BsiSI	CCGG	2 cut(s)	448, 589
BslFI	GGGAC	2 cut(s)	208, 1648
BslI	CCNNNNNNNGG	3 cut(s)	809, 1625, 1626
BsmAI	GTCTC	3 cut(s)	50, 292, 1504
BsmFI	GGGAC	2 cut(s)	208, 1648
BsmI	GAATGC	2 cut(s)	113, 129
BsnI	GGCC	3 cut(s)	1400, 1535, 1641
BsoBI	CYCGRG	1 cut(s)	648
Bsp1286I	GDGCHC	3 cut(s)	400, 695, 1486
BspACI	CCGC	4 cut(s)	10, 1208, 1616, 1676
BspANI	GGCC	3 cut(s)	1400, 1535, 1641
BspCNI	CTCAG	8 cut(s)	52, 302, 374, 754, 848, 1149, 1264, 1417
BspDI	ATCGAT	1 cut(s)	74
BspLI	GGNNCC	2 cut(s)	930, 1035
BspPI	GGATC	6 cut(s)	79, 591, 980, 1375, 1434, 1679
BspQI	GCTCTTC	1 cut(s)	228
BspTI	CTTAAG	1 cut(s)	629
BsrI	ACTGG	6 cut(s)	894, 952, 1097, 1147, 1218, 1317
BssECI	CCNNGG	1 cut(s)	783
BssSI	CACGAG	1 cut(s)	480
BssT1I	CCWWGG	1 cut(s)	783
Bst2BI	CACGAG	1 cut(s)	480
Bst4CI	ACNGT	3 cut(s)	233, 1118, 1350
Bst6I	CTCTTC	1 cut(s)	228
BstAFI	CTTAAG	1 cut(s)	629
BstBAI	YACGTR	2 cut(s)	791, 965
BstC8I	GCNNGC	4 cut(s)	264, 518, 522, 1512
BstF5I	GGATG	4 cut(s)	109, 830, 1066, 1612
BstMAI	GTCTC	3 cut(s)	50, 292, 1504
BstMWI	GCNNNNNNNGC	7 cut(s)	16, 272, 281, 707, 710, 794, 1520
BstNSI	RCATGY	1 cut(s)	266
BstSFI	CTRYAG	1 cut(s)	675
BstSLI	GKGCMC	1 cut(s)	1486
BstV1I	GCAGC	9 cut(s)	205, 271, 430, 535, 550, 553, 688, 722, 1075
BstV2I	GAAGAC	2 cut(s)	632, 1341
BstX2I	RGATCY	4 cut(s)	583, 985, 1439, 1684
BstYI	RGATCY	4 cut(s)	583, 985, 1439, 1684
Bsu15I	ATCGAT	1 cut(s)	74
BsuI	GTATCC	1 cut(s)	898
BsuRI	GGCC	3 cut(s)	1400, 1535, 1641
BsuTUI	ATCGAT	1 cut(s)	74
BtsCI	GGATG	4 cut(s)	109, 830, 1066, 1612
BtsI	GCAGTG	1 cut(s)	172
BtsIMutI	CAGTG	3 cut(s)	172, 398, 1154
Cac8I	GCNNGC	4 cut(s)	264, 518, 522, 1512
CaiI	CAGNNNCTG	3 cut(s)	139, 989, 1312
Cfr13I	GGNCC	1 cut(s)	1640
ClaI	ATCGAT	1 cut(s)	74
Csp6I	GTAC	3 cut(s)	887, 966, 1152
CviAII	CATG	3 cut(s)	263, 1057, 1192
CviQI	GTAC	3 cut(s)	887, 966, 1152
DraI	TTTAAA	1 cut(s)	1473
DraIII	CACNNNGTG	1 cut(s)	167
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
EciI	GGCGGA	2 cut(s)	25, 1605
Eco130I	CCWWGG	1 cut(s)	783
Eco147I	AGGCCT	1 cut(s)	1400
Eco32I	GATATC	2 cut(s)	78, 1048
Eco57I	CTGAAG	4 cut(s)	579, 726, 1023, 1365
Eco88I	CYCGRG	1 cut(s)	648
EcoRV	GATATC	2 cut(s)	78, 1048
EcoT14I	CCWWGG	1 cut(s)	783
ErhI	CCWWGG	1 cut(s)	783
FaeI	CATG	3 cut(s)	266, 1060, 1195
FalI	AAGNNNNNCTT	6 cut(s)	525, 557, 1239, 1271, 1363, 1395
FaqI	GGGAC	2 cut(s)	208, 1648
FatI	CATG	3 cut(s)	262, 1056, 1191
FbaI	TGATCA	1 cut(s)	106
Fnu4HI	GCNGC	9 cut(s)	219, 260, 419, 549, 564, 567, 702, 711, 1089
FokI	GGATG	4 cut(s)	116, 817, 1073, 1599
Fsp4HI	GCNGC	9 cut(s)	219, 260, 419, 549, 564, 567, 702, 711, 1089
FspBI	CTAG	2 cut(s)	1172, 1487
GluI	GCNGC	9 cut(s)	219, 260, 419, 549, 564, 567, 702, 711, 1089
GsaI	CCCAGC	1 cut(s)	298
GsuI	CTGGAG	2 cut(s)	1235, 1334
HaeIII	GGCC	3 cut(s)	1400, 1535, 1641
HapII	CCGG	2 cut(s)	448, 589
Hin1II	CATG	3 cut(s)	266, 1060, 1195
HindIII	AAGCTT	3 cut(s)	596, 632, 752
HinfI	GANTC	8 cut(s)	13, 651, 848, 944, 1134, 1195, 1288, 1427
HpaII	CCGG	2 cut(s)	448, 589
HphI	GGTGA	3 cut(s)	65, 1249, 1581
Hpy166II	GTNNAC	3 cut(s)	1152, 1484, 1589
Hpy188I	TCNGA	9 cut(s)	40, 91, 103, 307, 354, 871, 1139, 1293, 1384
Hpy8I	GTNNAC	3 cut(s)	1152, 1484, 1589
HpyAV	CCTTC	4 cut(s)	196, 1047, 1178, 1349
HpyCH4III	ACNGT	3 cut(s)	233, 1118, 1350
HpyCH4IV	ACGT	2 cut(s)	790, 964
HpyCH4V	TGCA	5 cut(s)	275, 671, 1091, 1361, 1484
HpyF10VI	GCNNNNNNNGC	7 cut(s)	16, 272, 281, 707, 710, 794, 1520
HpySE526I	ACGT	2 cut(s)	790, 964
Hsp92II	CATG	3 cut(s)	266, 1060, 1195
Ksp22I	TGATCA	1 cut(s)	106
LguI	GCTCTTC	1 cut(s)	228
LmnI	GCTCC	5 cut(s)	163, 395, 658, 928, 1507
Lsp1109I	GCAGC	9 cut(s)	205, 271, 430, 535, 550, 553, 688, 722, 1075
LweI	GCATC	1 cut(s)	1621
MaeI	CTAG	2 cut(s)	1172, 1487
MaeII	ACGT	2 cut(s)	790, 964
MaeIII	GTNAC	8 cut(s)	145, 233, 812, 920, 1099, 1118, 1237, 1428
MfeI	CAATTG	1 cut(s)	894
MflI	RGATCY	4 cut(s)	583, 985, 1439, 1684
MhlI	GDGCHC	3 cut(s)	400, 695, 1486
MluCI	AATT	7 cut(s)	248, 666, 894, 958, 995, 1570, 1656
MlyI	GAGTC	4 cut(s)	22, 660, 1128, 1436
MmeI	TCCRAC	3 cut(s)	882, 997, 1311
MroXI	GAANNNNTTC	1 cut(s)	1338
MslI	CAYNNNNRTG	1 cut(s)	390
MspA1I	CMGCKG	2 cut(s)	218, 1523
MspCI	CTTAAG	1 cut(s)	629
MspI	CCGG	2 cut(s)	448, 589
MunI	CAATTG	1 cut(s)	894
Mva1269I	GAATGC	2 cut(s)	113, 129
MwoI	GCNNNNNNNGC	7 cut(s)	16, 272, 281, 707, 710, 794, 1520
NlaIII	CATG	3 cut(s)	266, 1060, 1195
NlaIV	GGNNCC	2 cut(s)	930, 1035
NmuCI	GTSAC	5 cut(s)	145, 812, 920, 1237, 1428
NspI	RCATGY	1 cut(s)	266
PaeI	GCATGC	1 cut(s)	266
PaeR7I	CTCGAG	1 cut(s)	648
PceI	AGGCCT	1 cut(s)	1400
PciSI	GCTCTTC	1 cut(s)	228
PctI	GAATGC	2 cut(s)	113, 129
PdmI	GAANNNNTTC	1 cut(s)	1338
PfeI	GAWTC	4 cut(s)	848, 944, 1195, 1288
PflMI	CCANNNNNTGG	1 cut(s)	809
PkrI	GCNGC	9 cut(s)	220, 261, 420, 550, 565, 568, 703, 712, 1090
PleI	GAGTC	4 cut(s)	21, 659, 1128, 1435
PpsI	GAGTC	4 cut(s)	21, 659, 1128, 1435
Ppu21I	YACGTR	2 cut(s)	791, 965
PspFI	CCCAGC	1 cut(s)	294
PspN4I	GGNNCC	2 cut(s)	930, 1035
PspPI	GGNCC	1 cut(s)	1640
PstNI	CAGNNNCTG	3 cut(s)	139, 989, 1312
PsuI	RGATCY	4 cut(s)	583, 985, 1439, 1684
PvuII	CAGCTG	2 cut(s)	218, 1523
RsaI	GTAC	3 cut(s)	888, 967, 1153
RsaNI	GTAC	3 cut(s)	887, 966, 1152
RseI	CAYNNNNRTG	1 cut(s)	390
SapI	GCTCTTC	1 cut(s)	228
SatI	GCNGC	9 cut(s)	219, 260, 419, 549, 564, 567, 702, 711, 1089
Sau96I	GGNCC	1 cut(s)	1640
SchI	GAGTC	4 cut(s)	22, 660, 1128, 1436
SduI	GDGCHC	3 cut(s)	400, 695, 1486
SfaNI	GCATC	1 cut(s)	1621
SfcI	CTRYAG	1 cut(s)	675
Sfr274I	CTCGAG	1 cut(s)	648
SlaI	CTCGAG	1 cut(s)	648
SmiMI	CAYNNNNRTG	1 cut(s)	390
SmlI	CTYRAG	7 cut(s)	338, 509, 599, 629, 648, 1124, 1256
SmoI	CTYRAG	7 cut(s)	338, 509, 599, 629, 648, 1124, 1256
SphI	GCATGC	1 cut(s)	266
Sse9I	AATT	7 cut(s)	248, 666, 894, 958, 995, 1570, 1656
SseBI	AGGCCT	1 cut(s)	1400
SsiI	CCGC	4 cut(s)	10, 1208, 1616, 1676
SspI	AATATT	1 cut(s)	1357
SspMI	CTAG	2 cut(s)	1172, 1487
StuI	AGGCCT	1 cut(s)	1400
StyI	CCWWGG	1 cut(s)	783
TaaI	ACNGT	3 cut(s)	233, 1118, 1350
TaiI	ACGT	2 cut(s)	793, 967
TaqI	TCGA	3 cut(s)	74, 424, 649
TaqII	GACCGA	1 cut(s)	390
TasI	AATT	7 cut(s)	248, 666, 894, 958, 995, 1570, 1656
TatI	WGTACW	1 cut(s)	1151
TfiI	GAWTC	4 cut(s)	848, 944, 1195, 1288
TscAI	CASTG	3 cut(s)	172, 405, 1154
TseFI	GTSAC	5 cut(s)	145, 812, 920, 1237, 1428
TseI	GCWGC	9 cut(s)	218, 259, 418, 548, 563, 566, 701, 710, 1088
Tsp45I	GTSAC	5 cut(s)	145, 812, 920, 1237, 1428
TspDTI	ATGAA	5 cut(s)	186, 198, 261, 327, 1401
TspGWI	ACGGA	2 cut(s)	1432, 1650
TspRI	CASTG	3 cut(s)	172, 405, 1154
Van91I	CCANNNNNTGG	1 cut(s)	809
Vha464I	CTTAAG	1 cut(s)	629
VneI	GTGCAC	1 cut(s)	1482
XapI	RAATTY	2 cut(s)	958, 995
XbaI	TCTAGA	1 cut(s)	1171
XceI	RCATGY	1 cut(s)	266
XcmI	CCANNNNNNNNNTGG	3 cut(s)	247, 872, 1154
XhoI	CTCGAG	1 cut(s)	648
XmnI	GAANNNNTTC	1 cut(s)	1338
XspI	CTAG	2 cut(s)	1172, 1487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.