Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001130

Physical Location & Seq

Genomic Coordinates Reverse (-)

40107098 .. 40108821

Gene Structure 1724 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0254700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGATCAAAAACTTGAATCCGAAAGCAGAGTTTGCGTCACGGGAGCTTCTGGCTTTCTGGCATCTTGGCTTATTAAGCGACTTCTCATGTCAGGATATCATGTAACTGGAACTGTCAGAGATCCAGGAAACCAGAAGAAATTGGCACATTTGTGGAGGCTGGAAGGAGCTAAAGAAAGACTGAGATTGGTGAAGGCTGATTTAGTTGAAGAAGGTAGCTTTGATGATGCAATCTTCGGGTGCCATGGTGTCTTCCACTCTGCTTCTCCTGTACCCATACTTTCATCTGATCCAAAGAAAGAAATCCTAGACCCGGCTATTGAAGGCACATTGAATGTGCTTCGTTCATGTAAGAAGAATCCATCTCTAAGGCGTGTGGTTCTCACCTCATCTTCTTCAGCTGTAAGGGTGAGAGATGGTGATGATTTTGACCCCAATATTCCATTGGATGAGTCATCTTGGAGCTCTGTGGAACTCTGCGAGAAACTGCAGATTTGGTACCCTTTATCAAAAATTTTAGCTGAGAGGGCAGCATTGGATTTCTGCAAAGCAAATGGGATCGATTTAGTAACCGTTCTACCCACATTCGTTGTTGGACCTAGTTTGCCACCTGATTTATGTTCTACTGCATCTGATATACTTGGCCTGCTCAAGGGTGAAACAGAGAGGTTCAATTGGCATGGAAGAATGGGATATGTTCACATCGATGATGTTGCACTTTGCCACATCCTAGTTTATGAGCACAAAAGTGCTCATGGTCGATACATTTGCAACTCGACAGTGCTTGACAACAATGAGTTAGTATCCTTGCTATCCACAAGATATCCTTCCTTACCTATCCCTGAAAGGTTTGACCAACTGGAAAGGCCACACTATGATTTCAACACCTCAAAGTTGAGGGGTCTAGGATTTAAGTTCAAGACTGTCCAAGAGATGTTTGATGATTGCATTGCCTCTCTGGTGGAGCAAGGCCATCTTTCTCCATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FPP

Protein Analysis

329

Amino Acids

36.71

Weight (kDa)

6.01

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	11 - 251	9.7e-23	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	13 - 192	1.7e-13	3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4	PF07993	13 - 203	2.5e-12	Male sterility protein
GDP_Man_Dehyd	PF16363	13 - 132	4.7e-09	GDP-mannose 4,6 dehydratase
NAD_binding_10	PF13460	15 - 140	2.3e-08	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05270 AT3G05270 AT3G05270
fragaria_vesca	FvH4_1g25530 FvH4_1g25530 FvH4_1g25530 FvH4_1g25530 FvH4_1g25530 FvH4_1g25530 FvH4_1g25530 FvH4_1g25530 FvH4_2g26980 FvH4_2g26980 FvH4_2g26980 FvH4_2g26980 FvH4_2g26980
malus_domestica	MD08G1162500.v1.1 MD15G1138800.v1.1 MD15G1348000.v1.1
prunus_persica	Prupe.1G495600_v2.0.a1 Prupe.1G495600_v2.0.a1 Prupe.1G495600_v2.0.a1 Prupe.1G495600_v2.0.a1 Prupe.1G495600_v2.0.a1 Prupe.1G495600_v2.0.a1 Prupe.1G495600_v2.0.a1 Prupe.4G281900_v2.0.a1 Prupe.4G281900_v2.0.a1 Prupe.4G281900_v2.0.a1 Prupe.4G281900_v2.0.a1
pyrus_communis	pycom08g14040 pycom15g12550 pycom15g31180
rosa_chinensis	RchiOBHm_Chr2g0123661 RchiOBHm_Chr6g0295851
rosa_laevigata	RLG00000011762 RLG00000018767
rosa_multiflora	Rmu_sc0003139.1_g000002 Rmu_sc0004915.1_g000004 Rmu_sc0004915.1_g000005
rosa_roxburghii	Rroxscaffold_2G00120460 Rroxscaffold_7G00172110
rosa_rugosa	Rorug02G0247200 Rorug06G0254500 Rorug06G0254600 Rorug06G0254600 Rorug06G0254700 Rorug06G0254800
rosa_samantha	Rh2AG306200 Rh2BG314400 Rh2CG292600 Rh2DG329900 Rh6AG368300 Rh6BG376100 Rh6CG382200 Rh6DG368800
rosa_wichuraiana	Rw2G024550 Rw6G032110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	498
AccB1I	GGYRCC	2 cut(s)	240, 498
AclWI	GGATC	4 cut(s)	12, 116, 284, 566
AcsI	RAATTY	1 cut(s)	513
AcuI	CTGAAG	1 cut(s)	381
AfaI	GTAC	2 cut(s)	273, 500
AfiI	CCNNNNNNNGG	2 cut(s)	313, 652
AgsI	TTSAA	7 cut(s)	17, 209, 323, 334, 673, 883, 919
AjnI	CCWGG	1 cut(s)	124
AleI	CACNNNNGTG	2 cut(s)	151, 747
AluBI	AGCT	6 cut(s)	47, 170, 219, 401, 465, 521
AluI	AGCT	6 cut(s)	47, 170, 219, 401, 465, 521
Alw21I	GWGCWC	3 cut(s)	467, 744, 754
AlwI	GGATC	4 cut(s)	12, 116, 284, 566
AoxI	GGCC	3 cut(s)	643, 866, 970
ApeKI	GCWGC	1 cut(s)	530
ApoI	RAATTY	1 cut(s)	513
Asp718I	GGTACC	1 cut(s)	498
AspS9I	GGNCC	1 cut(s)	596
AsuC2I	CCSGG	1 cut(s)	314
AsuHPI	GGTGA	5 cut(s)	202, 376, 421, 431, 668
AvaII	GGWCC	1 cut(s)	596
BanI	GGYRCC	2 cut(s)	240, 498
BanII	GRGCYC	1 cut(s)	467
BbsI	GAAGAC	1 cut(s)	244
Bbv12I	GWGCWC	3 cut(s)	467, 744, 754
BbvI	GCAGC	1 cut(s)	542
BccI	CCATC	3 cut(s)	370, 410, 981
BcgI	CGANNNNNNTGC	4 cut(s)	695, 729, 750, 784
BciT130I	CCWGG	1 cut(s)	126
BciVI	GTATCC	1 cut(s)	814
BcnI	CCSGG	1 cut(s)	314
BfaI	CTAG	5 cut(s)	308, 600, 731, 905, 988
BfmI	CTRYAG	1 cut(s)	488
BfuI	GTATCC	1 cut(s)	814
BisI	GCNGC	1 cut(s)	531
BlsI	GCNGC	1 cut(s)	532
Bme1390I	CCNGG	2 cut(s)	126, 314
Bme18I	GGWCC	1 cut(s)	596
BmgT120I	GGNCC	1 cut(s)	596
BmiI	GGNNCC	2 cut(s)	242, 500
BmrFI	CCNGG	2 cut(s)	126, 314
BmsI	GCATC	3 cut(s)	71, 217, 638
BpiI	GAAGAC	1 cut(s)	244
BpuEI	CTTGAG	1 cut(s)	635
BpuMI	CCSGG	1 cut(s)	314
Bsa29I	ATCGAT	2 cut(s)	561, 705
BsaJI	CCNNGG	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	2 cut(s)	313, 652
Bse1I	ACTGG	2 cut(s)	112, 864
Bse3DI	GCAATG	1 cut(s)	948
BseBI	CCWGG	1 cut(s)	126
BseCI	ATCGAT	2 cut(s)	561, 705
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	2 cut(s)	454, 726
BseLI	CCNNNNNNNGG	2 cut(s)	313, 652
BseMI	GCAATG	1 cut(s)	948
BseMII	CTCAG	2 cut(s)	173, 513
BseNI	ACTGG	2 cut(s)	112, 864
BseXI	GCAGC	1 cut(s)	542
BshFI	GGCC	3 cut(s)	645, 868, 972
BshNI	GGYRCC	2 cut(s)	240, 498
BshVI	ATCGAT	2 cut(s)	561, 705
BsiHKAI	GWGCWC	3 cut(s)	467, 744, 754
BsiSI	CCGG	1 cut(s)	314
BslI	CCNNNNNNNGG	2 cut(s)	313, 652
BsnI	GGCC	3 cut(s)	645, 868, 972
Bsp1286I	GDGCHC	3 cut(s)	467, 744, 754
Bsp143I	GATC	4 cut(s)	4, 121, 289, 558
Bsp19I	CCATGG	1 cut(s)	244
BspANI	GGCC	3 cut(s)	645, 868, 972
BspCNI	CTCAG	2 cut(s)	174, 514
BspDI	ATCGAT	2 cut(s)	561, 705
BspLI	GGNNCC	2 cut(s)	242, 500
BspMAI	CTGCAG	1 cut(s)	492
BspPI	GGATC	4 cut(s)	12, 116, 284, 566
BspT107I	GGYRCC	2 cut(s)	240, 498
BsrDI	GCAATG	1 cut(s)	948
BsrI	ACTGG	2 cut(s)	112, 864
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	4 cut(s)	4, 121, 289, 558
BssT1I	CCWWGG	1 cut(s)	244
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	4 cut(s)	115, 574, 781, 925
BstAPI	GCANNNNNTGC	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	647
BstDEI	CTNAG	3 cut(s)	182, 368, 522
BstDSI	CCRYGG	1 cut(s)	244
BstENI	CCTNNNNNAGG	1 cut(s)	650
BstF5I	GGATG	2 cut(s)	454, 726
BstKTI	GATC	4 cut(s)	7, 124, 292, 561
BstMBI	GATC	4 cut(s)	4, 121, 289, 558
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 76, 527
BstNI	CCWGG	1 cut(s)	126
BstSCI	CCNGG	2 cut(s)	124, 312
BstSFI	CTRYAG	1 cut(s)	488
BstV1I	GCAGC	1 cut(s)	542
BstV2I	GAAGAC	1 cut(s)	244
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
Bsu15I	ATCGAT	2 cut(s)	561, 705
BsuI	GTATCC	1 cut(s)	814
BsuRI	GGCC	3 cut(s)	645, 868, 972
BsuTUI	ATCGAT	2 cut(s)	561, 705
BtgI	CCRYGG	1 cut(s)	244
BtsCI	GGATG	2 cut(s)	454, 726
BtsIMutI	CAGTG	1 cut(s)	786
Cac8I	GCNNGC	1 cut(s)	647
Cfr13I	GGNCC	1 cut(s)	596
ClaI	ATCGAT	2 cut(s)	561, 705
CseI	GACGC	1 cut(s)	25
Csp6I	GTAC	2 cut(s)	272, 499
CspCI	CAANNNNNGTGG	2 cut(s)	571, 606
CviAII	CATG	6 cut(s)	88, 101, 245, 348, 680, 755
CviQI	GTAC	2 cut(s)	272, 499
DdeI	CTNAG	3 cut(s)	182, 368, 522
DpnI	GATC	4 cut(s)	6, 123, 291, 560
DpnII	GATC	4 cut(s)	4, 121, 289, 558
Ecl136II	GAGCTC	1 cut(s)	465
Eco130I	CCWWGG	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	467
Eco32I	GATATC	2 cut(s)	98, 824
Eco47I	GGWCC	1 cut(s)	596
Eco53kI	GAGCTC	1 cut(s)	465
Eco57I	CTGAAG	1 cut(s)	381
EcoICRI	GAGCTC	1 cut(s)	465
EcoNI	CCTNNNNNAGG	1 cut(s)	650
EcoRII	CCWGG	1 cut(s)	124
EcoRV	GATATC	2 cut(s)	98, 824
EcoT14I	CCWWGG	1 cut(s)	244
EcoT38I	GRGCYC	1 cut(s)	467
ErhI	CCWWGG	1 cut(s)	244
FaeI	CATG	6 cut(s)	91, 104, 248, 351, 683, 758
FalI	AAGNNNNNCTT	3 cut(s)	811, 843, 960
FatI	CATG	6 cut(s)	87, 100, 244, 347, 679, 754
Fnu4HI	GCNGC	1 cut(s)	531
FokI	GGATG	2 cut(s)	461, 713
FriOI	GRGCYC	1 cut(s)	467
Fsp4HI	GCNGC	1 cut(s)	531
FspBI	CTAG	5 cut(s)	308, 600, 731, 905, 988
GluI	GCNGC	1 cut(s)	531
HaeIII	GGCC	3 cut(s)	645, 868, 972
HapII	CCGG	1 cut(s)	314
HgaI	GACGC	1 cut(s)	25
Hin1II	CATG	6 cut(s)	91, 104, 248, 351, 683, 758
HinfI	GANTC	3 cut(s)	17, 358, 452
HpaII	CCGG	1 cut(s)	314
HphI	GGTGA	5 cut(s)	202, 376, 421, 431, 668
Hpy166II	GTNNAC	1 cut(s)	700
Hpy188I	TCNGA	4 cut(s)	22, 119, 289, 634
Hpy188III	TCNNGA	2 cut(s)	93, 919
Hpy8I	GTNNAC	1 cut(s)	700
HpyAV	CCTTC	5 cut(s)	158, 187, 206, 317, 837
HpyCH4III	ACNGT	4 cut(s)	115, 574, 781, 925
HpyCH4V	TGCA	7 cut(s)	230, 490, 546, 629, 716, 771, 948
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 76, 527
HpyF3I	CTNAG	3 cut(s)	182, 368, 522
Hsp92II	CATG	6 cut(s)	91, 104, 248, 351, 683, 758
KpnI	GGTACC	1 cut(s)	502
Kzo9I	GATC	4 cut(s)	4, 121, 289, 558
LmnI	GCTCC	4 cut(s)	44, 167, 462, 964
Lsp1109I	GCAGC	1 cut(s)	542
LweI	GCATC	3 cut(s)	71, 217, 638
MaeI	CTAG	5 cut(s)	308, 600, 731, 905, 988
MaeIII	GTNAC	3 cut(s)	37, 103, 568
MalI	GATC	4 cut(s)	6, 123, 291, 560
MboI	GATC	4 cut(s)	4, 121, 289, 558
MboII	GAAGA	8 cut(s)	148, 221, 226, 244, 367, 384, 387, 696
MfeI	CAATTG	1 cut(s)	673
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	3 cut(s)	467, 744, 754
MluCI	AATT	3 cut(s)	140, 513, 673
MlyI	GAGTC	1 cut(s)	461
MmeI	TCCRAC	1 cut(s)	574
MnlI	CCTC	7 cut(s)	150, 397, 519, 660, 891, 898, 964
MseI	TTAA	2 cut(s)	75, 912
MslI	CAYNNNNRTG	3 cut(s)	151, 705, 747
MspA1I	CMGCKG	1 cut(s)	401
MspI	CCGG	1 cut(s)	314
MspR9I	CCNGG	2 cut(s)	126, 314
MunI	CAATTG	1 cut(s)	673
MvaI	CCWGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	3 cut(s)	33, 76, 527
NciI	CCSGG	1 cut(s)	314
NcoI	CCATGG	1 cut(s)	244
NdeII	GATC	4 cut(s)	4, 121, 289, 558
NlaIII	CATG	6 cut(s)	91, 104, 248, 351, 683, 758
NlaIV	GGNNCC	2 cut(s)	242, 500
NmuCI	GTSAC	1 cut(s)	37
OliI	CACNNNNGTG	2 cut(s)	151, 747
PfeI	GAWTC	2 cut(s)	17, 358
PfoI	TCCNGGA	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	532
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
Psp124BI	GAGCTC	1 cut(s)	467
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	2 cut(s)	242, 500
PspPI	GGNCC	1 cut(s)	596
PstI	CTGCAG	1 cut(s)	492
PsuI	RGATCY	1 cut(s)	121
PvuII	CAGCTG	1 cut(s)	401
RsaI	GTAC	2 cut(s)	273, 500
RsaNI	GTAC	2 cut(s)	272, 499
RseI	CAYNNNNRTG	3 cut(s)	151, 705, 747
SacI	GAGCTC	1 cut(s)	467
SaqAI	TTAA	2 cut(s)	75, 912
SatI	GCNGC	1 cut(s)	531
Sau3AI	GATC	4 cut(s)	4, 121, 289, 558
Sau96I	GGNCC	1 cut(s)	596
SchI	GAGTC	1 cut(s)	461
ScrFI	CCNGG	2 cut(s)	126, 314
SduI	GDGCHC	3 cut(s)	467, 744, 754
SfaNI	GCATC	3 cut(s)	71, 217, 638
SfcI	CTRYAG	1 cut(s)	488
SinI	GGWCC	1 cut(s)	596
SmiMI	CAYNNNNRTG	3 cut(s)	151, 705, 747
SmlI	CTYRAG	1 cut(s)	650
SmoI	CTYRAG	1 cut(s)	650
Sse9I	AATT	3 cut(s)	140, 513, 673
SspI	AATATT	1 cut(s)	439
SspMI	CTAG	5 cut(s)	308, 600, 731, 905, 988
SstI	GAGCTC	1 cut(s)	467
StyD4I	CCNGG	2 cut(s)	124, 312
StyI	CCWWGG	1 cut(s)	244
TaaI	ACNGT	4 cut(s)	115, 574, 781, 925
TaqI	TCGA	4 cut(s)	561, 705, 760, 776
TasI	AATT	3 cut(s)	140, 513, 673
TfiI	GAWTC	2 cut(s)	17, 358
Tru1I	TTAA	2 cut(s)	75, 912
Tru9I	TTAA	2 cut(s)	75, 912
TscAI	CASTG	1 cut(s)	786
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	1 cut(s)	530
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	2 cut(s)	273, 336
TspRI	CASTG	1 cut(s)	786
VpaK11BI	GGWCC	1 cut(s)	596
XagI	CCTNNNNNAGG	1 cut(s)	650
XapI	RAATTY	1 cut(s)	513
XcmI	CCANNNNNNNNNTGG	1 cut(s)	442
XspI	CTAG	5 cut(s)	308, 600, 731, 905, 988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.