Filament-like plant protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PAS_9 | PF13426 | 161 - 257 | 2.1e-20 | PAS domain |
| PAS_3 | PF08447 | 167 - 251 | 8.6e-09 | PAS fold |
| PAS | PF00989 | 167 - 252 | 4.4e-08 | PAS fold |
| PAS_9 | PF13426 | 442 - 534 | 5.5e-20 | PAS domain |
| PAS_3 | PF08447 | 446 - 531 | 1.9e-06 | PAS fold |
| PAS | PF00989 | 446 - 534 | 6.6e-07 | PAS fold |
| Pkinase | PF00069 | 622 - 907 | 4.3e-60 | Protein kinase domain |
| PK_Tyr_Ser-Thr | PF07714 | 623 - 770 | 4.1e-16 | Protein tyrosine and serine/threonine kinase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2330 |
| Acc36I | ACCTGC | 1 cut(s) | 748 |
| AccB1I | GGYRCC | 1 cut(s) | 2773 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1909 |
| AccII | CGCG | 3 cut(s) | 49, 1383, 2232 |
| AciI | CCGC | 5 cut(s) | 651, 1079, 1228, 2106, 2530 |
| AclWI | GGATC | 7 cut(s) | 106, 1307, 2034, 2673, 2686, 2737, 2792 |
| AcoI | YGGCCR | 2 cut(s) | 609, 2527 |
| AcsI | RAATTY | 6 cut(s) | 1320, 1389, 1531, 2144, 2413, 2845 |
| AcuI | CTGAAG | 3 cut(s) | 171, 563, 2765 |
| AcvI | CACGTG | 1 cut(s) | 1832 |
| AdeI | CACNNNGTG | 1 cut(s) | 1835 |
| AfaI | GTAC | 9 cut(s) | 72, 112, 776, 888, 1009, 1491, 1924, 2438, 2464 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 309, 1078, 1117, 1118, 1909, 2541, 2542, 2543 |
| AflII | CTTAAG | 2 cut(s) | 2237, 2345 |
| AflIII | ACRYGT | 2 cut(s) | 2074, 2669 |
| AgeI | ACCGGT | 1 cut(s) | 2459 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2276 |
| AjnI | CCWGG | 1 cut(s) | 1071 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 425, 457, 1510, 1542 |
| AleI | CACNNNNGTG | 1 cut(s) | 2475 |
| AluBI | AGCT | 6 cut(s) | 20, 88, 149, 440, 645, 1654 |
| AluI | AGCT | 6 cut(s) | 20, 88, 149, 440, 645, 1654 |
| Alw26I | GTCTC | 5 cut(s) | 1140, 1450, 1726, 2057, 2652 |
| AlwI | GGATC | 7 cut(s) | 106, 1307, 2034, 2673, 2686, 2737, 2792 |
| AoxI | GGCC | 7 cut(s) | 300, 609, 806, 2467, 2527, 2735, 2805 |
| ApoI | RAATTY | 6 cut(s) | 1320, 1389, 1531, 2144, 2413, 2845 |
| AsiGI | ACCGGT | 1 cut(s) | 2459 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1535, 2147, 2205 |
| AspLEI | GCGC | 3 cut(s) | 49, 1107, 1254 |
| AspS9I | GGNCC | 3 cut(s) | 584, 1225, 1421 |
| AsuNHI | GCTAGC | 1 cut(s) | 926 |
| AvaII | GGWCC | 3 cut(s) | 584, 1225, 1421 |
| AxyI | CCTNAGG | 1 cut(s) | 1029 |
| BalI | TGGCCA | 1 cut(s) | 611 |
| BamHI | GGATCC | 1 cut(s) | 2678 |
| BanI | GGYRCC | 1 cut(s) | 2773 |
| BanII | GRGCYC | 2 cut(s) | 2497, 2759 |
| BbrPI | CACGTG | 1 cut(s) | 1832 |
| BbsI | GAAGAC | 3 cut(s) | 440, 1762, 2832 |
| BccI | CCATC | 7 cut(s) | 121, 185, 671, 746, 1472, 1595, 2261 |
| BceAI | ACGGC | 1 cut(s) | 2645 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 852, 886 |
| BciT130I | CCWGG | 1 cut(s) | 1073 |
| BclI | TGATCA | 3 cut(s) | 397, 1609, 2637 |
| BcoDI | GTCTC | 5 cut(s) | 1140, 1450, 1726, 2057, 2652 |
| BfmI | CTRYAG | 1 cut(s) | 2178 |
| BfrI | CTTAAG | 2 cut(s) | 2237, 2345 |
| BfuAI | ACCTGC | 1 cut(s) | 748 |
| BglII | AGATCT | 3 cut(s) | 1741, 2360, 2587 |
| BmcAI | AGTACT | 1 cut(s) | 112 |
| Bme1390I | CCNGG | 1 cut(s) | 1073 |
| Bme18I | GGWCC | 3 cut(s) | 584, 1225, 1421 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2276 |
| BmgT120I | GGNCC | 3 cut(s) | 584, 1225, 1421 |
| BmiI | GGNNCC | 5 cut(s) | 585, 1226, 2428, 2680, 2775 |
| BmrFI | CCNGG | 1 cut(s) | 1073 |
| BmrI | ACTGGG | 1 cut(s) | 645 |
| BmtI | GCTAGC | 1 cut(s) | 930 |
| BmuI | ACTGGG | 1 cut(s) | 645 |
| BpiI | GAAGAC | 3 cut(s) | 440, 1762, 2832 |
| BpmI | CTGGAG | 2 cut(s) | 1167, 2243 |
| BpuEI | CTTGAG | 1 cut(s) | 1750 |
| BsaAI | YACGTR | 1 cut(s) | 1832 |
| BsaBI | GATNNNNATC | 4 cut(s) | 103, 358, 1126, 1851 |
| BsaI | GGTCTC | 2 cut(s) | 1726, 2652 |
| BsaJI | CCNNGG | 7 cut(s) | 413, 1071, 1255, 1875, 2196, 2722, 2808 |
| BsaWI | WCCGGW | 3 cut(s) | 586, 2459, 2611 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 249, 279, 2350, 2380 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 309, 1078, 1117, 1118, 1909, 2541, 2542, 2543 |
| Bse118I | RCCGGY | 1 cut(s) | 2459 |
| Bse1I | ACTGG | 6 cut(s) | 538, 640, 1897, 2028, 2399, 2692 |
| Bse21I | CCTNAGG | 1 cut(s) | 1029 |
| Bse3DI | GCAATG | 7 cut(s) | 64, 449, 937, 1008, 1956, 2190, 2439 |
| Bse8I | GATNNNNATC | 4 cut(s) | 103, 358, 1126, 1851 |
| BseBI | CCWGG | 1 cut(s) | 1073 |
| BseDI | CCNNGG | 7 cut(s) | 413, 1071, 1255, 1875, 2196, 2722, 2808 |
| BseJI | GATNNNNATC | 4 cut(s) | 103, 358, 1126, 1851 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 309, 1078, 1117, 1118, 1909, 2541, 2542, 2543 |
| BseMI | GCAATG | 7 cut(s) | 64, 449, 937, 1008, 1956, 2190, 2439 |
| BseMII | CTCAG | 3 cut(s) | 1043, 1113, 2235 |
| BseNI | ACTGG | 6 cut(s) | 538, 640, 1897, 2028, 2399, 2692 |
| BseRI | GAGGAG | 1 cut(s) | 1017 |
| Bsh1236I | CGCG | 3 cut(s) | 49, 1383, 2232 |
| BshFI | GGCC | 7 cut(s) | 302, 611, 808, 2469, 2529, 2737, 2807 |
| BshNI | GGYRCC | 1 cut(s) | 2773 |
| BshTI | ACCGGT | 1 cut(s) | 2459 |
| BsiSI | CCGG | 5 cut(s) | 272, 587, 959, 2460, 2612 |
| BslFI | GGGAC | 2 cut(s) | 597, 1238 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 309, 1078, 1117, 1118, 1909, 2541, 2542, 2543 |
| BsmAI | GTCTC | 5 cut(s) | 1140, 1450, 1726, 2057, 2652 |
| BsmFI | GGGAC | 2 cut(s) | 597, 1238 |
| BsmI | GAATGC | 3 cut(s) | 131, 759, 2607 |
| BsnI | GGCC | 7 cut(s) | 302, 611, 808, 2469, 2529, 2737, 2807 |
| Bso31I | GGTCTC | 2 cut(s) | 1726, 2652 |
| Bsp1286I | GDGCHC | 2 cut(s) | 2497, 2759 |
| Bsp1407I | TGTACA | 2 cut(s) | 886, 1489 |
| Bsp68I | TCGCGA | 1 cut(s) | 2232 |
| BspACI | CCGC | 5 cut(s) | 651, 1079, 1228, 2106, 2530 |
| BspANI | GGCC | 7 cut(s) | 302, 611, 808, 2469, 2529, 2737, 2807 |
| BspCNI | CTCAG | 3 cut(s) | 1042, 1112, 2236 |
| BspFNI | CGCG | 3 cut(s) | 49, 1383, 2232 |
| BspHI | TCATGA | 1 cut(s) | 949 |
| BspLI | GGNNCC | 5 cut(s) | 585, 1226, 2428, 2680, 2775 |
| BspMAI | CTGCAG | 1 cut(s) | 2182 |
| BspMI | ACCTGC | 1 cut(s) | 748 |
| BspOI | GCTAGC | 1 cut(s) | 930 |
| BspPI | GGATC | 7 cut(s) | 106, 1307, 2034, 2673, 2686, 2737, 2792 |
| BspQI | GCTCTTC | 2 cut(s) | 665, 948 |
| BspT107I | GGYRCC | 1 cut(s) | 2773 |
| BspTI | CTTAAG | 2 cut(s) | 2237, 2345 |
| BspTNI | GGTCTC | 2 cut(s) | 1726, 2652 |
| BsrDI | GCAATG | 7 cut(s) | 64, 449, 937, 1008, 1956, 2190, 2439 |
| BsrFI | RCCGGY | 1 cut(s) | 2459 |
| BsrGI | TGTACA | 2 cut(s) | 886, 1489 |
| BsrI | ACTGG | 6 cut(s) | 538, 640, 1897, 2028, 2399, 2692 |
| BssAI | RCCGGY | 1 cut(s) | 2459 |
| BssECI | CCNNGG | 7 cut(s) | 413, 1071, 1255, 1875, 2196, 2722, 2808 |
| BssT1I | CCWWGG | 5 cut(s) | 413, 1255, 1875, 2196, 2808 |
| Bst2UI | CCWGG | 1 cut(s) | 1073 |
| Bst4CI | ACNGT | 9 cut(s) | 569, 706, 895, 1444, 1489, 1494, 1935, 2213, 2766 |
| Bst6I | CTCTTC | 6 cut(s) | 547, 665, 948, 2345, 2427, 2784 |
| BstAFI | CTTAAG | 2 cut(s) | 2237, 2345 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1552 |
| BstAUI | TGTACA | 2 cut(s) | 886, 1489 |
| BstBAI | YACGTR | 1 cut(s) | 1832 |
| BstC8I | GCNNGC | 6 cut(s) | 229, 511, 928, 1081, 1154, 1996 |
| BstDEI | CTNAG | 4 cut(s) | 1029, 1099, 1509, 2244 |
| BstDSI | CCRYGG | 1 cut(s) | 2722 |
| BstFNI | CGCG | 3 cut(s) | 49, 1383, 2232 |
| BstHHI | GCGC | 3 cut(s) | 49, 1107, 1254 |
| BstMAI | GTCTC | 5 cut(s) | 1140, 1450, 1726, 2057, 2652 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 245, 1149, 1552, 1946, 2131, 2782 |
| BstNI | CCWGG | 1 cut(s) | 1073 |
| BstNSI | RCATGY | 2 cut(s) | 919, 1998 |
| BstSCI | CCNGG | 1 cut(s) | 1071 |
| BstSFI | CTRYAG | 1 cut(s) | 2178 |
| BstUI | CGCG | 3 cut(s) | 49, 1383, 2232 |
| BstV2I | GAAGAC | 3 cut(s) | 440, 1762, 2832 |
| BstX2I | RGATCY | 4 cut(s) | 1741, 2360, 2587, 2678 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1601, 2267 |
| BstYI | RGATCY | 4 cut(s) | 1741, 2360, 2587, 2678 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1029 |
| BsuRI | GGCC | 7 cut(s) | 302, 611, 808, 2469, 2529, 2737, 2807 |
| BtgI | CCRYGG | 1 cut(s) | 2722 |
| BtsI | GCAGTG | 5 cut(s) | 165, 520, 1680, 1903, 2482 |
| BtsIMutI | CAGTG | 8 cut(s) | 165, 520, 1485, 1680, 1903, 1998, 2209, 2482 |
| BtuMI | TCGCGA | 1 cut(s) | 2232 |
| BveI | ACCTGC | 1 cut(s) | 748 |
| Cac8I | GCNNGC | 6 cut(s) | 229, 511, 928, 1081, 1154, 1996 |
| CciI | TCATGA | 1 cut(s) | 949 |
| CfoI | GCGC | 3 cut(s) | 49, 1107, 1254 |
| Cfr10I | RCCGGY | 1 cut(s) | 2459 |
| Cfr13I | GGNCC | 3 cut(s) | 584, 1225, 1421 |
| CseI | GACGC | 1 cut(s) | 851 |
| Csp6I | GTAC | 9 cut(s) | 71, 111, 775, 887, 1008, 1490, 1923, 2437, 2463 |
| CspAI | ACCGGT | 1 cut(s) | 2459 |
| CviAII | CATG | 8 cut(s) | 389, 916, 950, 967, 1552, 1613, 1995, 2752 |
| CviQI | GTAC | 9 cut(s) | 71, 111, 775, 887, 1008, 1490, 1923, 2437, 2463 |
| DdeI | CTNAG | 4 cut(s) | 1029, 1099, 1509, 2244 |
| DraIII | CACNNNGTG | 1 cut(s) | 1835 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2276 |
| EaeI | YGGCCR | 2 cut(s) | 609, 2527 |
| Eam1104I | CTCTTC | 6 cut(s) | 547, 665, 948, 2345, 2427, 2784 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2276 |
| EarI | CTCTTC | 6 cut(s) | 547, 665, 948, 2345, 2427, 2784 |
| EciI | GGCGGA | 1 cut(s) | 2121 |
| Eco130I | CCWWGG | 5 cut(s) | 413, 1255, 1875, 2196, 2808 |
| Eco24I | GRGCYC | 2 cut(s) | 2497, 2759 |
| Eco31I | GGTCTC | 2 cut(s) | 1726, 2652 |
| Eco47I | GGWCC | 3 cut(s) | 584, 1225, 1421 |
| Eco57I | CTGAAG | 3 cut(s) | 171, 563, 2765 |
| Eco72I | CACGTG | 1 cut(s) | 1832 |
| Eco81I | CCTNAGG | 1 cut(s) | 1029 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1421 |
| EcoRI | GAATTC | 1 cut(s) | 1320 |
| EcoRII | CCWGG | 1 cut(s) | 1071 |
| EcoT14I | CCWWGG | 5 cut(s) | 413, 1255, 1875, 2196, 2808 |
| EcoT38I | GRGCYC | 2 cut(s) | 2497, 2759 |
| ErhI | CCWWGG | 5 cut(s) | 413, 1255, 1875, 2196, 2808 |
| FaeI | CATG | 8 cut(s) | 392, 919, 953, 970, 1555, 1616, 1998, 2755 |
| FaqI | GGGAC | 2 cut(s) | 597, 1238 |
| FatI | CATG | 8 cut(s) | 388, 915, 949, 966, 1551, 1612, 1994, 2751 |
| FauI | CCCGC | 1 cut(s) | 1072 |
| FbaI | TGATCA | 3 cut(s) | 397, 1609, 2637 |
| FriOI | GRGCYC | 2 cut(s) | 2497, 2759 |
| GlaI | GCGC | 3 cut(s) | 48, 1106, 1253 |
| GsuI | CTGGAG | 2 cut(s) | 1167, 2243 |
| HaeIII | GGCC | 7 cut(s) | 302, 611, 808, 2469, 2529, 2737, 2807 |
| HapII | CCGG | 5 cut(s) | 272, 587, 959, 2460, 2612 |
| HgaI | GACGC | 1 cut(s) | 851 |
| HhaI | GCGC | 3 cut(s) | 49, 1107, 1254 |
| Hin1II | CATG | 8 cut(s) | 392, 919, 953, 970, 1555, 1616, 1998, 2755 |
| Hin6I | GCGC | 3 cut(s) | 47, 1105, 1252 |
| HinP1I | GCGC | 3 cut(s) | 47, 1105, 1252 |
| HincII | GTYRAC | 1 cut(s) | 2372 |
| HindII | GTYRAC | 1 cut(s) | 2372 |
| HinfI | GANTC | 7 cut(s) | 203, 278, 323, 359, 380, 694, 2159 |
| HpaII | CCGG | 5 cut(s) | 272, 587, 959, 2460, 2612 |
| Hpy166II | GTNNAC | 6 cut(s) | 777, 1010, 1571, 1987, 2318, 2372 |
| Hpy8I | GTNNAC | 6 cut(s) | 777, 1010, 1571, 1987, 2318, 2372 |
| Hpy99I | CGWCG | 1 cut(s) | 2834 |
| HpyCH4III | ACNGT | 9 cut(s) | 569, 706, 895, 1444, 1489, 1494, 1935, 2213, 2766 |
| HpyCH4IV | ACGT | 5 cut(s) | 186, 907, 1831, 2076, 2671 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 245, 1149, 1552, 1946, 2131, 2782 |
| HpyF3I | CTNAG | 4 cut(s) | 1029, 1099, 1509, 2244 |
| HpySE526I | ACGT | 5 cut(s) | 186, 907, 1831, 2076, 2671 |
| Hsp92II | CATG | 8 cut(s) | 392, 919, 953, 970, 1555, 1616, 1998, 2755 |
| HspAI | GCGC | 3 cut(s) | 47, 1105, 1252 |
| Ksp22I | TGATCA | 3 cut(s) | 397, 1609, 2637 |
| LguI | GCTCTTC | 2 cut(s) | 665, 948 |
| LmnI | GCTCC | 1 cut(s) | 2449 |
| MaeII | ACGT | 5 cut(s) | 186, 907, 1831, 2076, 2671 |
| MaeIII | GTNAC | 6 cut(s) | 536, 706, 825, 1556, 1976, 2455 |
| MfeI | CAATTG | 2 cut(s) | 1170, 1595 |
| MflI | RGATCY | 4 cut(s) | 1741, 2360, 2587, 2678 |
| MhlI | GDGCHC | 2 cut(s) | 2497, 2759 |
| MlsI | TGGCCA | 1 cut(s) | 611 |
| MluNI | TGGCCA | 1 cut(s) | 611 |
| MlyI | GAGTC | 3 cut(s) | 197, 389, 2153 |
| MmeI | TCCRAC | 3 cut(s) | 46, 351, 2404 |
| Mox20I | TGGCCA | 1 cut(s) | 611 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1535, 2147, 2205 |
| MscI | TGGCCA | 1 cut(s) | 611 |
| MslI | CAYNNNNRTG | 4 cut(s) | 121, 1566, 2475, 2612 |
| Msp20I | TGGCCA | 1 cut(s) | 611 |
| MspA1I | CMGCKG | 2 cut(s) | 20, 149 |
| MspCI | CTTAAG | 2 cut(s) | 2237, 2345 |
| MspI | CCGG | 5 cut(s) | 272, 587, 959, 2460, 2612 |
| MspR9I | CCNGG | 1 cut(s) | 1073 |
| MunI | CAATTG | 2 cut(s) | 1170, 1595 |
| Mva1269I | GAATGC | 3 cut(s) | 131, 759, 2607 |
| MvaI | CCWGG | 1 cut(s) | 1073 |
| MvnI | CGCG | 3 cut(s) | 49, 1383, 2232 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 245, 1149, 1552, 1946, 2131, 2782 |
| NheI | GCTAGC | 1 cut(s) | 926 |
| NlaIII | CATG | 8 cut(s) | 392, 919, 953, 970, 1555, 1616, 1998, 2755 |
| NlaIV | GGNNCC | 5 cut(s) | 585, 1226, 2428, 2680, 2775 |
| NmuCI | GTSAC | 3 cut(s) | 706, 825, 1556 |
| NruI | TCGCGA | 1 cut(s) | 2232 |
| NspI | RCATGY | 2 cut(s) | 919, 1998 |
| OliI | CACNNNNGTG | 1 cut(s) | 2475 |
| PaeI | GCATGC | 1 cut(s) | 1998 |
| PagI | TCATGA | 1 cut(s) | 949 |
| PciSI | GCTCTTC | 2 cut(s) | 665, 948 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 224, 2427 |
| PctI | GAATGC | 3 cut(s) | 131, 759, 2607 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1535, 2147, 2205 |
| PfeI | GAWTC | 4 cut(s) | 278, 323, 359, 694 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1909 |
| PinAI | ACCGGT | 1 cut(s) | 2459 |
| PleI | GAGTC | 3 cut(s) | 197, 388, 2153 |
| PmaCI | CACGTG | 1 cut(s) | 1832 |
| PmlI | CACGTG | 1 cut(s) | 1832 |
| PpsI | GAGTC | 3 cut(s) | 197, 388, 2153 |
| Ppu21I | YACGTR | 1 cut(s) | 1832 |
| PpuMI | RGGWCCY | 1 cut(s) | 1421 |
| PsiI | TTATAA | 1 cut(s) | 2330 |
| Psp5II | RGGWCCY | 1 cut(s) | 1421 |
| Psp6I | CCWGG | 1 cut(s) | 1071 |
| PspCI | CACGTG | 1 cut(s) | 1832 |
| PspGI | CCWGG | 1 cut(s) | 1071 |
| PspN4I | GGNNCC | 5 cut(s) | 585, 1226, 2428, 2680, 2775 |
| PspPI | GGNCC | 3 cut(s) | 584, 1225, 1421 |
| PspPPI | RGGWCCY | 1 cut(s) | 1421 |
| PstI | CTGCAG | 1 cut(s) | 2182 |
| PsuI | RGATCY | 4 cut(s) | 1741, 2360, 2587, 2678 |
| PvuII | CAGCTG | 2 cut(s) | 20, 149 |
| RruI | TCGCGA | 1 cut(s) | 2232 |
| RsaI | GTAC | 9 cut(s) | 72, 112, 776, 888, 1009, 1491, 1924, 2438, 2464 |
| RsaNI | GTAC | 9 cut(s) | 71, 111, 775, 887, 1008, 1490, 1923, 2437, 2463 |
| RseI | CAYNNNNRTG | 4 cut(s) | 121, 1566, 2475, 2612 |
| SapI | GCTCTTC | 2 cut(s) | 665, 948 |
| Sau96I | GGNCC | 3 cut(s) | 584, 1225, 1421 |
| ScaI | AGTACT | 1 cut(s) | 112 |
| SchI | GAGTC | 3 cut(s) | 197, 389, 2153 |
| ScrFI | CCNGG | 1 cut(s) | 1073 |
| SduI | GDGCHC | 2 cut(s) | 2497, 2759 |
| SfcI | CTRYAG | 1 cut(s) | 2178 |
| SinI | GGWCC | 3 cut(s) | 584, 1225, 1421 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 121, 1566, 2475, 2612 |
| SmlI | CTYRAG | 3 cut(s) | 1729, 2237, 2345 |
| SmoI | CTYRAG | 3 cut(s) | 1729, 2237, 2345 |
| SphI | GCATGC | 1 cut(s) | 1998 |
| SsiI | CCGC | 5 cut(s) | 651, 1079, 1228, 2106, 2530 |
| SspI | AATATT | 2 cut(s) | 1580, 2251 |
| StyD4I | CCNGG | 1 cut(s) | 1071 |
| StyI | CCWWGG | 5 cut(s) | 413, 1255, 1875, 2196, 2808 |
| TaaI | ACNGT | 9 cut(s) | 569, 706, 895, 1444, 1489, 1494, 1935, 2213, 2766 |
| TaiI | ACGT | 5 cut(s) | 189, 910, 1834, 2079, 2674 |
| TaqI | TCGA | 3 cut(s) | 135, 847, 872 |
| TatI | WGTACW | 7 cut(s) | 70, 110, 774, 886, 1007, 1489, 2436 |
| TauI | GCSGC | 1 cut(s) | 2532 |
| TfiI | GAWTC | 4 cut(s) | 278, 323, 359, 694 |
| TscAI | CASTG | 8 cut(s) | 172, 520, 1492, 1687, 1903, 2005, 2216, 2482 |
| TseFI | GTSAC | 3 cut(s) | 706, 825, 1556 |
| Tsp45I | GTSAC | 3 cut(s) | 706, 825, 1556 |
| TspDTI | ATGAA | 9 cut(s) | 105, 618, 966, 983, 1573, 1745, 1958, 2046, 2156 |
| TspGWI | ACGGA | 4 cut(s) | 233, 824, 2711, 2735 |
| TspRI | CASTG | 8 cut(s) | 172, 520, 1492, 1687, 1903, 2005, 2216, 2482 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1909 |
| Vha464I | CTTAAG | 2 cut(s) | 2237, 2345 |
| VpaK11BI | GGWCC | 3 cut(s) | 584, 1225, 1421 |
| XapI | RAATTY | 6 cut(s) | 1320, 1389, 1531, 2144, 2413, 2845 |
| XbaI | TCTAGA | 1 cut(s) | 1360 |
| XceI | RCATGY | 2 cut(s) | 919, 1998 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1743, 1873 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1535, 2147, 2205 |
| ZrmI | AGTACT | 1 cut(s) | 112 |