pycom15g12550

Filament-like plant protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
8560012 .. 8562927
2916 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g12550.3

Sequence Viewer

Length: 1776 bp
ATGGACAGGCGGAGTCGGCTGTGGCAAAGGAAGTCATCAGACAAGAGTCCCGGCGACACTGAGAGTTCGGGATCCATATCTTCTCACTCTGAAAGATTTTCTGATGATCAGGCAAATCCAACTCATAGCATTCTATCGCCAGAAGTCACTTCTAAAGCTCCACCCGATGATCGACAAGTTAATGGGAGTGTTGAGGCTTTGACGGAGAAATTATCCGCTGCTCTTCTTAACTGTAGTGCCAAAGATGATTTGGTAAAGCAGCATGCTAAAGTTGCAGAAGAAGCTGTCTCAGGCTGGGAGAAGGCTGAAAATGAAGCGGTTGGTTTAAGACAGCAACTTGAGGCTGCAAATAAGAAAAAATCAGCTCTTGAAGACCGAGTTGGTCATCTCGATGGAGCGCTGAAAGAATGCGTGAGGCAGCTTCGACAGGCACGAGAAGAGCAAGACAAGAATACCAATGATGTCGTTGCCAAAAGAACTCGTGAGTGGGAAAGTTCAAAGTCCATGCTTGAGAGTCAGATTGTTGAGCTCGAAGCACAACTTCAAACTGCTAAATCGGGAGCTGCTGCCTCAATTGATTTTGATTTGCTTTCAAAGCTTGATGCTACTGAAAAAGAGAACTCTGATCTTCAACTTAAGCTTCTTTCTCGAGTGAAGGAGCTAGAAGTCAGGACTATTGAGAGAGATTTGAGCACCCAAGCTGCTGAAACAGCCAGCAAGCAATATTTAGAGAGCATAAAAAAAGTGGCTAAGCTTGAAGCTGAGTGCCGTAAGCTAAAAGTCTTGACTCGCAAAGCATTACCGGCTAATGATCACAAATCCTTTTCTGCATCCTCAGTTTGTGCAGAATCTTTTACAGATAGCCAGTCAGATAGTTGGGAGAGGATAGTGGCAATTGATCTGGATACACACAAAGTGAGTGGCTTGGAGCATGATCCAAGCCATTCAGATTCACGGGCTCCTGCTCAAATAACAGAACCTGGCCAGTTTAAGAACAAGAAGAGGTTTGGAAAATATGTCCCTTCAGTAGAAATCAATCTCATGGATGATTTTCTTGAAATGGAAAGGCTTGCCGCAACTCCAGATACAGAAAATGACGACTGTTGTCAACCTAGCGTTAGGGAAAACCCTTTAAGAACTGAACCTGAAACCATGATACAAAGGACTGTGGAACTTGAGGGGAAGTTAGAGAAGATGGCAGCAGAAAAAGTGGAACTCGAGATGACTCTGACTGAGTGTCAAAAGCAGCTTGAGACATCACAGAGTCAACTTATGGAGGCTGATACGAAGTTGGAAGGCCTTAAAAGACAGTTGGCTCATGCAAATGACTCGATGTATGATGCACAGGAAGAAGTAAAGTCCTATCAAACAATGAGAGAAGTTGCAGAGTCACAACTAAGAGCTGTTCAAAAGGAATACAACTCCTTGCTTTTAAAGGCTAGTTCACTGGAAGAAGAGGTTTCTAAGGAGCGAGATTTATCAGCTGAAAATGTAGCCAAATGCCAAAAACTGGAGACTGAGCTATTAAGTATGAAACATGAAGCTGAGCTCCAGCGTGAGGTTGAGCTCCAACGATTGCGCAGTACTAATGGTGAATTGAAGATAAAGCAGGAGAAAGAGCTAGCATTGGCTGCGAACAAATATGCAGAGTGCCAGAAAACAATTGCATCTCTTGGCCAACAGTTGAAGTCACTTGCAACACTGGAGGACTTCCTGGTGGACTCTGAAAGGCCATCGGAGCTCATCGGCACGGGCATACAGTGTGGAACAACATGA

Protein Analysis

592

Amino Acids

66.13

Weight (kDa)

5.13

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1580
AccB7I CCANNNNNTGG 1 cut(s) 1510
AciI CCGC 4 cut(s) 10, 216, 317, 1074
AclWI GGATC 3 cut(s) 66, 79, 929
AcoI YGGCCR 2 cut(s) 982, 1675
AcuI CTGAAG 1 cut(s) 1008
AdeI CACNNNGTG 1 cut(s) 916
AfaI GTAC 1 cut(s) 1585
AfeI AGCGCT 1 cut(s) 399
AfiI CCNNNNNNNGG 2 cut(s) 1510, 1558
AflII CTTAAG 1 cut(s) 635
AhdI GACNNNNNGTC 1 cut(s) 1236
AjnI CCWGG 2 cut(s) 979, 1713
AjuI GAANNNNNNNTTGG 2 cut(s) 363, 395
Alw21I GWGCWC 5 cut(s) 531, 695, 1551, 1569, 1743
Alw26I GTCTC 3 cut(s) 292, 1247, 1508
AlwI GGATC 3 cut(s) 66, 79, 929
AlwNI CAGNNNCTG 1 cut(s) 980
Ama87I CYCGRG 2 cut(s) 648, 1217
Aor51HI AGCGCT 1 cut(s) 399
AoxI GGCC 4 cut(s) 982, 1297, 1675, 1730
AspLEI GCGC 2 cut(s) 400, 1581
AsuC2I CCSGG 1 cut(s) 51
AsuHPI GGTGA 1 cut(s) 1604
AsuNHI GCTAGC 1 cut(s) 1621
AvaI CYCGRG 2 cut(s) 648, 1217
BalI TGGCCA 2 cut(s) 984, 1677
BamHI GGATCC 1 cut(s) 71
BanII GRGCYC 5 cut(s) 531, 961, 1551, 1569, 1743
BauI CACGAG 2 cut(s) 432, 480
BbsI GAAGAC 1 cut(s) 378
Bbv12I GWGCWC 5 cut(s) 531, 695, 1551, 1569, 1743
BccI CCATC 3 cut(s) 386, 1189, 1741
BceAI ACGGC 1 cut(s) 753
BcgI CGANNNNNNTGC 2 cut(s) 1311, 1345
BciT130I CCWGG 2 cut(s) 981, 1715
BciVI GTATCC 1 cut(s) 898
BclI TGATCA 2 cut(s) 106, 811
BcnI CCSGG 1 cut(s) 51
BcoDI GTCTC 3 cut(s) 292, 1247, 1508
BfaI CTAG 4 cut(s) 662, 1113, 1440, 1622
BfmI CTRYAG 1 cut(s) 232
BfoI RGCGCY 1 cut(s) 401
BfrI CTTAAG 1 cut(s) 635
BfuI GTATCC 1 cut(s) 898
BlpI GCTNAGC 2 cut(s) 750, 1545
BmcAI AGTACT 1 cut(s) 1585
Bme1390I CCNGG 3 cut(s) 51, 981, 1715
BmeRI GACNNNNNGTC 1 cut(s) 1236
BmeT110I CYCGRG 2 cut(s) 648, 1217
BmiI GGNNCC 2 cut(s) 73, 960
BmrFI CCNGG 3 cut(s) 51, 981, 1715
BmsI GCATC 4 cut(s) 592, 839, 1330, 1676
BmtI GCTAGC 1 cut(s) 1625
BoxI GACNNNNGTC 2 cut(s) 45, 1104
BpiI GAAGAC 1 cut(s) 378
BpmI CTGGAG 4 cut(s) 1065, 1532, 1535, 1724
Bpu1102I GCTNAGC 2 cut(s) 750, 1545
BpuEI CTTGAG 4 cut(s) 359, 530, 1196, 1271
BpuMI CCSGG 1 cut(s) 51
BsaBI GATNNNNATC 1 cut(s) 76
Bsc4I CCNNNNNNNGG 2 cut(s) 1510, 1558
Bse118I RCCGGY 1 cut(s) 802
Bse1I ACTGG 5 cut(s) 865, 985, 1452, 1515, 1707
Bse8I GATNNNNATC 1 cut(s) 76
BseBI CCWGG 2 cut(s) 981, 1715
BseGI GGATG 2 cut(s) 830, 1051
BseJI GATNNNNATC 1 cut(s) 76
BseLI CCNNNNNNNGG 2 cut(s) 1510, 1558
BseMII CTCAG 7 cut(s) 51, 303, 753, 849, 1224, 1509, 1536
BseNI ACTGG 5 cut(s) 865, 985, 1452, 1515, 1707
BseYI CCCAGC 1 cut(s) 294
BsgI GTGCAG 1 cut(s) 864
BshFI GGCC 4 cut(s) 984, 1299, 1677, 1732
BsiHKAI GWGCWC 5 cut(s) 531, 695, 1551, 1569, 1743
BsiHKCI CYCGRG 2 cut(s) 648, 1217
BsiSI CCGG 2 cut(s) 51, 803
BslFI GGGAC 2 cut(s) 33, 1004
BslI CCNNNNNNNGG 2 cut(s) 1510, 1558
BsmAI GTCTC 3 cut(s) 292, 1247, 1508
BsmFI GGGAC 2 cut(s) 33, 1004
BsmI GAATGC 2 cut(s) 129, 413
BsnI GGCC 4 cut(s) 984, 1299, 1677, 1732
BsoBI CYCGRG 2 cut(s) 648, 1217
Bsp1286I GDGCHC 6 cut(s) 531, 695, 961, 1551, 1569, 1743
Bsp143I GATC 7 cut(s) 71, 106, 169, 625, 811, 898, 934
Bsp1720I GCTNAGC 2 cut(s) 750, 1545
BspACI CCGC 4 cut(s) 10, 216, 317, 1074
BspANI GGCC 4 cut(s) 984, 1299, 1677, 1732
BspCNI CTCAG 7 cut(s) 52, 302, 754, 848, 1225, 1510, 1537
BspLI GGNNCC 2 cut(s) 73, 960
BspOI GCTAGC 1 cut(s) 1625
BspPI GGATC 3 cut(s) 66, 79, 929
BspQI GCTCTTC 2 cut(s) 228, 432
BspTI CTTAAG 1 cut(s) 635
BsrFI RCCGGY 1 cut(s) 802
BsrI ACTGG 5 cut(s) 865, 985, 1452, 1515, 1707
BssAI RCCGGY 1 cut(s) 802
BssMI GATC 7 cut(s) 71, 106, 169, 625, 811, 898, 934
BssSI CACGAG 2 cut(s) 432, 480
Bst2BI CACGAG 2 cut(s) 432, 480
Bst2UI CCWGG 2 cut(s) 981, 1715
Bst4CI ACNGT 6 cut(s) 233, 1103, 1168, 1311, 1683, 1761
Bst6I CTCTTC 4 cut(s) 228, 432, 995, 1449
BstAFI CTTAAG 1 cut(s) 635
BstAPI GCANNNNNTGC 1 cut(s) 1631
BstC8I GCNNGC 5 cut(s) 264, 715, 719, 1071, 1623
BstF5I GGATG 2 cut(s) 830, 1051
BstH2I RGCGCY 1 cut(s) 401
BstHHI GCGC 2 cut(s) 400, 1581
BstKTI GATC 7 cut(s) 74, 109, 172, 628, 814, 901, 937
BstMAI GTCTC 3 cut(s) 292, 1247, 1508
BstMBI GATC 7 cut(s) 71, 106, 169, 625, 811, 898, 934
BstMWI GCNNNNNNNGC 8 cut(s) 16, 272, 281, 595, 710, 803, 1631, 1738
BstNI CCWGG 2 cut(s) 981, 1715
BstNSI RCATGY 1 cut(s) 266
BstPAI GACNNNNGTC 2 cut(s) 45, 1104
BstSCI CCNGG 3 cut(s) 49, 979, 1713
BstSFI CTRYAG 1 cut(s) 232
BstV2I GAAGAC 1 cut(s) 378
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
BsuI GTATCC 1 cut(s) 898
BsuRI GGCC 4 cut(s) 984, 1299, 1677, 1732
BtsCI GGATG 2 cut(s) 830, 1051
BtsIMutI CAGTG 4 cut(s) 57, 1445, 1700, 1766
Cac8I GCNNGC 5 cut(s) 264, 715, 719, 1071, 1623
CaiI CAGNNNCTG 1 cut(s) 980
CfoI GCGC 2 cut(s) 400, 1581
Cfr10I RCCGGY 1 cut(s) 802
Csp6I GTAC 1 cut(s) 1584
CspCI CAANNNNNGTGG 2 cut(s) 901, 936
CviAII CATG 8 cut(s) 263, 505, 932, 1042, 1153, 1319, 1538, 1773
CviQI GTAC 1 cut(s) 1584
DpnI GATC 7 cut(s) 73, 108, 171, 627, 813, 900, 936
DpnII GATC 7 cut(s) 71, 106, 169, 625, 811, 898, 934
DraI TTTAAA 1 cut(s) 1434
DraIII CACNNNGTG 1 cut(s) 916
DriI GACNNNNNGTC 1 cut(s) 1236
EaeI YGGCCR 2 cut(s) 982, 1675
Eam1104I CTCTTC 4 cut(s) 228, 432, 995, 1449
Eam1105I GACNNNNNGTC 1 cut(s) 1236
EarI CTCTTC 4 cut(s) 228, 432, 995, 1449
EciI GGCGGA 1 cut(s) 25
Ecl136II GAGCTC 4 cut(s) 529, 1549, 1567, 1741
Eco147I AGGCCT 1 cut(s) 1299
Eco24I GRGCYC 5 cut(s) 531, 961, 1551, 1569, 1743
Eco47III AGCGCT 1 cut(s) 399
Eco53kI GAGCTC 4 cut(s) 529, 1549, 1567, 1741
Eco57I CTGAAG 1 cut(s) 1008
Eco88I CYCGRG 2 cut(s) 648, 1217
EcoICRI GAGCTC 4 cut(s) 529, 1549, 1567, 1741
EcoRII CCWGG 2 cut(s) 979, 1713
EcoT38I GRGCYC 5 cut(s) 531, 961, 1551, 1569, 1743
FaeI CATG 8 cut(s) 266, 508, 935, 1045, 1156, 1322, 1541, 1776
FalI AAGNNNNNCTT 2 cut(s) 525, 557
FaqI GGGAC 2 cut(s) 33, 1004
FatI CATG 8 cut(s) 262, 504, 931, 1041, 1152, 1318, 1537, 1772
FbaI TGATCA 2 cut(s) 106, 811
FokI GGATG 2 cut(s) 817, 1058
FriOI GRGCYC 5 cut(s) 531, 961, 1551, 1569, 1743
FspBI CTAG 4 cut(s) 662, 1113, 1440, 1622
FspI TGCGCA 1 cut(s) 1580
GlaI GCGC 2 cut(s) 399, 1580
GsaI CCCAGC 1 cut(s) 298
GsuI CTGGAG 4 cut(s) 1065, 1532, 1535, 1724
HaeII RGCGCY 1 cut(s) 401
HaeIII GGCC 4 cut(s) 984, 1299, 1677, 1732
HapII CCGG 2 cut(s) 51, 803
HhaI GCGC 2 cut(s) 400, 1581
Hin1II CATG 8 cut(s) 266, 508, 935, 1045, 1156, 1322, 1541, 1776
Hin6I GCGC 2 cut(s) 398, 1579
HinP1I GCGC 2 cut(s) 398, 1579
HincII GTYRAC 2 cut(s) 1109, 1268
HindII GTYRAC 2 cut(s) 1109, 1268
HindIII AAGCTT 3 cut(s) 596, 638, 752
HpaII CCGG 2 cut(s) 51, 803
HphI GGTGA 1 cut(s) 1604
Hpy166II GTNNAC 4 cut(s) 1109, 1268, 1445, 1720
Hpy8I GTNNAC 4 cut(s) 1109, 1268, 1445, 1720
HpyAV CCTTC 4 cut(s) 295, 649, 1032, 1289
HpyCH4III ACNGT 6 cut(s) 233, 1103, 1168, 1311, 1683, 1761
HpyF10VI GCNNNNNNNGC 8 cut(s) 16, 272, 281, 595, 710, 803, 1631, 1738
Hsp92II CATG 8 cut(s) 266, 508, 935, 1045, 1156, 1322, 1541, 1776
HspAI GCGC 2 cut(s) 398, 1579
Ksp22I TGATCA 2 cut(s) 106, 811
Kzo9I GATC 7 cut(s) 71, 106, 169, 625, 811, 898, 934
LguI GCTCTTC 2 cut(s) 228, 432
LweI GCATC 4 cut(s) 592, 839, 1330, 1676
MaeI CTAG 4 cut(s) 662, 1113, 1440, 1622
MaeIII GTNAC 3 cut(s) 145, 1389, 1689
MalI GATC 7 cut(s) 73, 108, 171, 627, 813, 900, 936
MboI GATC 7 cut(s) 71, 106, 169, 625, 811, 898, 934
MfeI CAATTG 3 cut(s) 573, 894, 1662
MflI RGATCY 1 cut(s) 71
MhlI GDGCHC 6 cut(s) 531, 695, 961, 1551, 1569, 1743
MlsI TGGCCA 2 cut(s) 984, 1677
MluCI AATT 5 cut(s) 209, 573, 894, 1595, 1662
MluNI TGGCCA 2 cut(s) 984, 1677
MlyI GAGTC 9 cut(s) 22, 55, 523, 781, 1219, 1273, 1322, 1397, 1715
MmeI TCCRAC 3 cut(s) 143, 1272, 1594
Mox20I TGGCCA 2 cut(s) 984, 1677
MscI TGGCCA 2 cut(s) 984, 1677
MseI TTAA 9 cut(s) 180, 228, 326, 636, 990, 1133, 1302, 1433, 1526
MslI CAYNNNNRTG 2 cut(s) 390, 1323
Msp20I TGGCCA 2 cut(s) 984, 1677
MspA1I CMGCKG 2 cut(s) 218, 1484
MspCI CTTAAG 1 cut(s) 635
MspI CCGG 2 cut(s) 51, 803
MspR9I CCNGG 3 cut(s) 51, 981, 1715
MunI CAATTG 3 cut(s) 573, 894, 1662
Mva1269I GAATGC 2 cut(s) 129, 413
MvaI CCWGG 2 cut(s) 981, 1715
MwoI GCNNNNNNNGC 8 cut(s) 16, 272, 281, 595, 710, 803, 1631, 1738
NciI CCSGG 1 cut(s) 51
NdeII GATC 7 cut(s) 71, 106, 169, 625, 811, 898, 934
NheI GCTAGC 1 cut(s) 1621
NlaIII CATG 8 cut(s) 266, 508, 935, 1045, 1156, 1322, 1541, 1776
NlaIV GGNNCC 2 cut(s) 73, 960
NmuCI GTSAC 3 cut(s) 145, 1389, 1689
NsbI TGCGCA 1 cut(s) 1580
NspI RCATGY 1 cut(s) 266
PaeI GCATGC 1 cut(s) 266
PaeR7I CTCGAG 2 cut(s) 648, 1217
PceI AGGCCT 1 cut(s) 1299
PciSI GCTCTTC 2 cut(s) 228, 432
PcsI WCGNNNNNNNCGW 1 cut(s) 430
PctI GAATGC 2 cut(s) 129, 413
PfeI GAWTC 2 cut(s) 848, 950
PflMI CCANNNNNTGG 1 cut(s) 1510
PleI GAGTC 9 cut(s) 21, 54, 522, 781, 1219, 1272, 1322, 1396, 1715
PpsI GAGTC 9 cut(s) 21, 54, 522, 781, 1219, 1272, 1322, 1396, 1715
PshAI GACNNNNGTC 2 cut(s) 45, 1104
Psp124BI GAGCTC 4 cut(s) 531, 1551, 1569, 1743
Psp6I CCWGG 2 cut(s) 979, 1713
PspFI CCCAGC 1 cut(s) 294
PspGI CCWGG 2 cut(s) 979, 1713
PspN4I GGNNCC 2 cut(s) 73, 960
PstNI CAGNNNCTG 1 cut(s) 980
PsuI RGATCY 1 cut(s) 71
PvuII CAGCTG 1 cut(s) 1484
RsaI GTAC 1 cut(s) 1585
RsaNI GTAC 1 cut(s) 1584
RseI CAYNNNNRTG 2 cut(s) 390, 1323
SacI GAGCTC 4 cut(s) 531, 1551, 1569, 1743
SapI GCTCTTC 2 cut(s) 228, 432
SaqAI TTAA 9 cut(s) 180, 228, 326, 636, 990, 1133, 1302, 1433, 1526
Sau3AI GATC 7 cut(s) 71, 106, 169, 625, 811, 898, 934
ScaI AGTACT 1 cut(s) 1585
SchI GAGTC 9 cut(s) 22, 55, 523, 781, 1219, 1273, 1322, 1397, 1715
ScrFI CCNGG 3 cut(s) 51, 981, 1715
SduI GDGCHC 6 cut(s) 531, 695, 961, 1551, 1569, 1743
SfaNI GCATC 4 cut(s) 592, 839, 1330, 1676
SfcI CTRYAG 1 cut(s) 232
Sfr274I CTCGAG 2 cut(s) 648, 1217
SlaI CTCGAG 2 cut(s) 648, 1217
SmiMI CAYNNNNRTG 2 cut(s) 390, 1323
SmlI CTYRAG 7 cut(s) 338, 509, 635, 648, 1175, 1217, 1250
SmoI CTYRAG 7 cut(s) 338, 509, 635, 648, 1175, 1217, 1250
SphI GCATGC 1 cut(s) 266
Sse9I AATT 5 cut(s) 209, 573, 894, 1595, 1662
SseBI AGGCCT 1 cut(s) 1299
SsiI CCGC 4 cut(s) 10, 216, 317, 1074
SspI AATATT 1 cut(s) 725
SspMI CTAG 4 cut(s) 662, 1113, 1440, 1622
SstI GAGCTC 4 cut(s) 531, 1551, 1569, 1743
StuI AGGCCT 1 cut(s) 1299
StyD4I CCNGG 3 cut(s) 49, 979, 1713
TaaI ACNGT 6 cut(s) 233, 1103, 1168, 1311, 1683, 1761
TaqI TCGA 7 cut(s) 172, 390, 424, 531, 649, 1218, 1331
TaqII GACCGA 1 cut(s) 390
TasI AATT 5 cut(s) 209, 573, 894, 1595, 1662
TatI WGTACW 1 cut(s) 1583
TauI GCSGC 1 cut(s) 1076
TfiI GAWTC 2 cut(s) 848, 950
Tru1I TTAA 9 cut(s) 180, 228, 326, 636, 990, 1133, 1302, 1433, 1526
Tru9I TTAA 9 cut(s) 180, 228, 326, 636, 990, 1133, 1302, 1433, 1526
TscAI CASTG 4 cut(s) 64, 1452, 1707, 1766
TseFI GTSAC 3 cut(s) 145, 1389, 1689
Tsp45I GTSAC 3 cut(s) 145, 1389, 1689
TspDTI ATGAA 3 cut(s) 327, 1547, 1554
TspGWI ACGGA 1 cut(s) 218
TspRI CASTG 4 cut(s) 64, 1452, 1707, 1766
Van91I CCANNNNNTGG 1 cut(s) 1510
Vha464I CTTAAG 1 cut(s) 635
XceI RCATGY 1 cut(s) 266
XcmI CCANNNNNNNNNTGG 1 cut(s) 247
XhoI CTCGAG 2 cut(s) 648, 1217
XspI CTAG 4 cut(s) 662, 1113, 1440, 1622
ZrmI AGTACT 1 cut(s) 1585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.