Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001130

Physical Location & Seq

Genomic Coordinates Forward (+)

41862443 .. 41866351

Gene Structure 3909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG329900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1788 bp

ATGGATAGGCGGAGTCGGCTGTGGCAAAGGAAATCATCAGACAAGAGTTCTGGTGAGACTGAGAGTTCGGGATCGATATCTTCTCATTCTGAAAGATTTTCGGATGATCAGGCATTCCCAACTCATAGCATTCAGTCGCTGGAAGTCACTTCTAAAGCTCCATGCAGTGATGAAGAACTTAATGAAAGTGTTAGGACTTTGAAGGAGAAACTATCAGCTGCTCTTCTTGACAGTAACGCCAAAGATGAATTGGTAAAGCAGCATGCTAAAGTTGCAGAAGAAGCTGTCTCAGGCTGGGAGAAGTCTGAAAATGAAGTGTTGGGCTTAAAACAGCAACTTGAGGCTACAAATCAGAAAAACTCGGCTCTTAAAGACCGAGTTGGTCATCTTGATGGAGCACTGAAAGAATGCGTGAGGCAGCTTCGACAGGCAAGAGAAGATCAAGACCGGAATACTAATGAGGTTGTTGCTAAGAAAACTCGTGAATGGGATAGTTCAAAGTCCATACTTGAGAGCCAGCTTGCTGATCTCCAAGCACAACTTCAAGCTGCTAAAACTGAAGCTGCTGCCTCCATTGGTAAGGATCTCCGGTTAAAGCTTGAGGCTACTGAAAAAGAGAACTCTGCTCTTAAGCTTAGTCTTCGCTCTCGAGTCAAGGAGCTTGAAATTGCAACTATAGAGAGGGATTTGAGCACCCAAGCTGCTGAAGCAGCGAGTAAGCAACATTTAGAGAGCATAAAAAAGGTTGTTAAGCTTGAAGCTGAGTGCCGTAGGCTAAACGCCTTGGCACGTAAAGCACTACCAGATAATGGTCACAAATCCTTTTCTACATCCTCAGTTTATGTAGAATCCATTATAGATAGCCAATCAGATAGTGGGGAGAGGGTACTGGCAATTGAGTTGGATACAGATAAAGCGAGTGACTTGGAGCCAAGTGAATGTGATTCAAGCCAGTCAAATTCACGTACATATGCTCGTATCACAGATCCTGATAAATTTAATAAAGAAAAAGGTGTTGGAAAAAATCTAATGGTTCCTTCAGTAGATATCAATCTCATGGATGATTTTCTTGAAATGGAAAGGTTTGCTGCAACGCCAGTTACAAAAAATAAGAACTGTTACCTTGAGGCAGGACTCAGATCAAACCAGTGTACTGCTGGAAAAAACCTTCTAGAAACTGAACTTGAAACCATGATTCAAAGGACTGCGGAACTGGAGGGGAAGTTAGAGAAGATGGTGACAGAAAAAGTGGAACTTGAGATGACTATGACTGAGTGCGAAAAGGAGATTCAGACATTAAAAAGTCAGCTACTGGAGGCTGATTTGAAGTTGGAAGACCTTCAAACACAGTTGAATATTGCAAATGGATCAAGGTATGCTTCAGATGAAGAAGTAAAGGCCTGTCAAACAATGAGAGAAGTGGCTGAGTCACAACTAAGATCCGTTCAAACTGAACTTGACTGCTTGATTTTAAAAGTCGGTGCACTAGAAGAAGATGTCTCAAAGGAGCGAGCTTTATCAGCTGAAAATGAGGCCAAATGCCAGAAAGTTGAGAATGAGCTATTGATAATGAAACATGAAGCTGAGCTCCAGCGTATGGCTAGTACTAGCGGTCATTTGAAGATACAGCAGGAGAAAGAGCTGGCATTGGCTGCAAGTAAATTTGCAGAGTGCCAGAAAACAATTGCATCTCTTGGCCAACAGTTAAAATCACTTGCAACATTGGAGGACATCTTAATGGACTCAGATAGGCCATCGGACCTGATTGATGAAGCTCTGCATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0030674 GO:0031410 GO:0031982 GO:0032879 GO:0032880 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0060090 GO:0060178 GO:0060341 GO:0065007 GO:0097708 GO:1903827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FPP

Protein Analysis

595

Amino Acids

66.25

Weight (kDa)

5.05

Isoelectric Point (pI)

45.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FPP	PF05911	81 - 189	2.4e-35	Filament-like plant protein, long coiled-coil
FPP	PF05911	180 - 268	3e-22	Filament-like plant protein, long coiled-coil
FPP	PF05911	316 - 382	2.3e-07	Filament-like plant protein, long coiled-coil
FPP	PF05911	400 - 574	7.6e-23	Filament-like plant protein, long coiled-coil

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05270 AT3G05270 AT3G05270
fragaria_vesca	FvH4_1g25530 FvH4_1g25530 FvH4_1g25530 FvH4_1g25530 FvH4_1g25530 FvH4_1g25530 FvH4_1g25530 FvH4_1g25530 FvH4_2g26980 FvH4_2g26980 FvH4_2g26980 FvH4_2g26980 FvH4_2g26980
malus_domestica	MD08G1162500.v1.1 MD15G1138800.v1.1 MD15G1348000.v1.1
prunus_persica	Prupe.1G495600_v2.0.a1 Prupe.1G495600_v2.0.a1 Prupe.1G495600_v2.0.a1 Prupe.1G495600_v2.0.a1 Prupe.1G495600_v2.0.a1 Prupe.1G495600_v2.0.a1 Prupe.1G495600_v2.0.a1 Prupe.4G281900_v2.0.a1 Prupe.4G281900_v2.0.a1 Prupe.4G281900_v2.0.a1 Prupe.4G281900_v2.0.a1
pyrus_communis	pycom08g14040 pycom15g12550 pycom15g31180
rosa_chinensis	RchiOBHm_Chr2g0123661 RchiOBHm_Chr6g0295851
rosa_laevigata	RLG00000011762 RLG00000018767
rosa_multiflora	Rmu_sc0003139.1_g000002 Rmu_sc0004915.1_g000004 Rmu_sc0004915.1_g000005
rosa_roxburghii	Rroxscaffold_2G00120460 Rroxscaffold_7G00172110
rosa_rugosa	Rorug02G0247200 Rorug06G0254500 Rorug06G0254600 Rorug06G0254600 Rorug06G0254700 Rorug06G0254800
rosa_samantha	Rh2AG306200 Rh2BG314400 Rh2CG292600 Rh2DG329900 Rh6AG368300 Rh6BG376100 Rh6CG382200 Rh6DG368800
rosa_wichuraiana	Rw2G024550 Rw6G032110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	809, 1597
AciI	CCGC	3 cut(s)	10, 1208, 1611
AclWI	GGATC	5 cut(s)	79, 591, 980, 1375, 1434
AcoI	YGGCCR	1 cut(s)	1696
AcsI	RAATTY	3 cut(s)	958, 995, 1661
AcuI	CTGAAG	4 cut(s)	579, 726, 1023, 1365
AfaI	GTAC	4 cut(s)	888, 967, 1153, 1606
AfiI	CCNNNNNNNGG	2 cut(s)	809, 1597
AflII	CTTAAG	1 cut(s)	629
AjuI	GAANNNNNNNTTGG	4 cut(s)	525, 557, 999, 1031
Alw21I	GWGCWC	4 cut(s)	400, 695, 1486, 1590
Alw26I	GTCTC	3 cut(s)	50, 292, 1504
Alw44I	GTGCAC	1 cut(s)	1482
AlwI	GGATC	5 cut(s)	79, 591, 980, 1375, 1434
AlwNI	CAGNNNCTG	3 cut(s)	139, 989, 1312
Ama87I	CYCGRG	1 cut(s)	648
AoxI	GGCC	4 cut(s)	1398, 1533, 1696, 1751
ApaLI	GTGCAC	1 cut(s)	1482
ApoI	RAATTY	3 cut(s)	958, 995, 1661
ArsI	GACNNNNNNTTYG	2 cut(s)	49, 81
Asp700I	GAANNNNTTC	1 cut(s)	1338
AspS9I	GGNCC	1 cut(s)	1759
AsuHPI	GGTGA	2 cut(s)	65, 1249
AvaI	CYCGRG	1 cut(s)	648
AvaII	GGWCC	1 cut(s)	1759
BaeGI	GKGCMC	1 cut(s)	1486
BalI	TGGCCA	1 cut(s)	1698
BanII	GRGCYC	1 cut(s)	1590
BauI	CACGAG	1 cut(s)	480
BbsI	GAAGAC	2 cut(s)	632, 1341
Bbv12I	GWGCWC	4 cut(s)	400, 695, 1486, 1590
BccI	CCATC	3 cut(s)	386, 1228, 1762
BceAI	ACGGC	1 cut(s)	753
BciVI	GTATCC	1 cut(s)	898
BclI	TGATCA	1 cut(s)	106
BcoDI	GTCTC	3 cut(s)	50, 292, 1504
BfaI	CTAG	4 cut(s)	1172, 1487, 1602, 1608
BfmI	CTRYAG	1 cut(s)	675
BfrI	CTTAAG	1 cut(s)	629
BfuI	GTATCC	1 cut(s)	898
BlpI	GCTNAGC	1 cut(s)	1584
BmcAI	AGTACT	1 cut(s)	1606
Bme18I	GGWCC	1 cut(s)	1759
BmeT110I	CYCGRG	1 cut(s)	648
BmgT120I	GGNCC	1 cut(s)	1759
BmiI	GGNNCC	2 cut(s)	930, 1035
BmsI	GCATC	1 cut(s)	1697
BpiI	GAAGAC	2 cut(s)	632, 1341
BpmI	CTGGAG	3 cut(s)	1235, 1334, 1574
Bpu1102I	GCTNAGC	1 cut(s)	1584
BpuEI	CTTGAG	5 cut(s)	359, 530, 620, 1145, 1277
Bsa29I	ATCGAT	1 cut(s)	74
BsaAI	YACGTR	2 cut(s)	791, 965
BsaBI	GATNNNNATC	2 cut(s)	76, 1050
BsaJI	CCNNGG	1 cut(s)	783
BsaWI	WCCGGW	2 cut(s)	447, 588
BsaXI	ACNNNNNCTCC	2 cut(s)	1208, 1238
Bsc4I	CCNNNNNNNGG	2 cut(s)	809, 1597
Bse1I	ACTGG	6 cut(s)	894, 952, 1097, 1147, 1218, 1317
Bse8I	GATNNNNATC	2 cut(s)	76, 1050
BseCI	ATCGAT	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	783
BseGI	GGATG	3 cut(s)	109, 830, 1066
BseJI	GATNNNNATC	2 cut(s)	76, 1050
BseLI	CCNNNNNNNGG	2 cut(s)	809, 1597
BseMII	CTCAG	9 cut(s)	51, 303, 753, 849, 1150, 1263, 1416, 1575, 1758
BseNI	ACTGG	6 cut(s)	894, 952, 1097, 1147, 1218, 1317
BseSI	GKGCMC	1 cut(s)	1486
BseYI	CCCAGC	1 cut(s)	294
BshFI	GGCC	4 cut(s)	1400, 1535, 1698, 1753
BshVI	ATCGAT	1 cut(s)	74
BsiHKAI	GWGCWC	4 cut(s)	400, 695, 1486, 1590
BsiHKCI	CYCGRG	1 cut(s)	648
BsiSI	CCGG	2 cut(s)	448, 589
BslI	CCNNNNNNNGG	2 cut(s)	809, 1597
BsmAI	GTCTC	3 cut(s)	50, 292, 1504
BsmI	GAATGC	4 cut(s)	113, 129, 413, 1780
BsnI	GGCC	4 cut(s)	1400, 1535, 1698, 1753
BsoBI	CYCGRG	1 cut(s)	648
Bsp1286I	GDGCHC	4 cut(s)	400, 695, 1486, 1590
Bsp143I	GATC	9 cut(s)	71, 106, 439, 526, 583, 985, 1139, 1367, 1439
Bsp1720I	GCTNAGC	1 cut(s)	1584
BspACI	CCGC	3 cut(s)	10, 1208, 1611
BspANI	GGCC	4 cut(s)	1400, 1535, 1698, 1753
BspCNI	CTCAG	9 cut(s)	52, 302, 754, 848, 1149, 1264, 1417, 1576, 1757
BspDI	ATCGAT	1 cut(s)	74
BspHI	TCATGA	1 cut(s)	1784
BspLI	GGNNCC	2 cut(s)	930, 1035
BspPI	GGATC	5 cut(s)	79, 591, 980, 1375, 1434
BspQI	GCTCTTC	1 cut(s)	228
BspTI	CTTAAG	1 cut(s)	629
BsrI	ACTGG	6 cut(s)	894, 952, 1097, 1147, 1218, 1317
BssECI	CCNNGG	1 cut(s)	783
BssMI	GATC	9 cut(s)	71, 106, 439, 526, 583, 985, 1139, 1367, 1439
BssSI	CACGAG	1 cut(s)	480
BssT1I	CCWWGG	1 cut(s)	783
Bst2BI	CACGAG	1 cut(s)	480
Bst4CI	ACNGT	4 cut(s)	233, 1118, 1350, 1704
Bst6I	CTCTTC	1 cut(s)	228
BstAFI	CTTAAG	1 cut(s)	629
BstAPI	GCANNNNNTGC	1 cut(s)	1652
BstBAI	YACGTR	2 cut(s)	791, 965
BstC8I	GCNNGC	5 cut(s)	264, 518, 522, 1512, 1644
BstF5I	GGATG	3 cut(s)	109, 830, 1066
BstKTI	GATC	9 cut(s)	74, 109, 442, 529, 586, 988, 1142, 1370, 1442
BstMAI	GTCTC	3 cut(s)	50, 292, 1504
BstMBI	GATC	9 cut(s)	71, 106, 439, 526, 583, 985, 1139, 1367, 1439
BstMWI	GCNNNNNNNGC	8 cut(s)	16, 272, 281, 707, 710, 794, 1520, 1652
BstNSI	RCATGY	1 cut(s)	266
BstSFI	CTRYAG	1 cut(s)	675
BstSLI	GKGCMC	1 cut(s)	1486
BstV2I	GAAGAC	2 cut(s)	632, 1341
BstX2I	RGATCY	3 cut(s)	583, 985, 1439
BstYI	RGATCY	3 cut(s)	583, 985, 1439
Bsu15I	ATCGAT	1 cut(s)	74
BsuI	GTATCC	1 cut(s)	898
BsuRI	GGCC	4 cut(s)	1400, 1535, 1698, 1753
BsuTUI	ATCGAT	1 cut(s)	74
BtsCI	GGATG	3 cut(s)	109, 830, 1066
BtsI	GCAGTG	1 cut(s)	172
BtsIMutI	CAGTG	3 cut(s)	172, 398, 1154
Cac8I	GCNNGC	5 cut(s)	264, 518, 522, 1512, 1644
CaiI	CAGNNNCTG	3 cut(s)	139, 989, 1312
CciI	TCATGA	1 cut(s)	1784
Cfr13I	GGNCC	1 cut(s)	1759
ClaI	ATCGAT	1 cut(s)	74
Csp6I	GTAC	4 cut(s)	887, 966, 1152, 1605
CviAII	CATG	6 cut(s)	162, 263, 1057, 1192, 1577, 1785
CviQI	GTAC	4 cut(s)	887, 966, 1152, 1605
DpnI	GATC	9 cut(s)	73, 108, 441, 528, 585, 987, 1141, 1369, 1441
DpnII	GATC	9 cut(s)	71, 106, 439, 526, 583, 985, 1139, 1367, 1439
DraI	TTTAAA	1 cut(s)	1473
EaeI	YGGCCR	1 cut(s)	1696
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
EciI	GGCGGA	1 cut(s)	25
Ecl136II	GAGCTC	1 cut(s)	1588
Eco130I	CCWWGG	1 cut(s)	783
Eco147I	AGGCCT	1 cut(s)	1400
Eco24I	GRGCYC	1 cut(s)	1590
Eco32I	GATATC	2 cut(s)	78, 1048
Eco47I	GGWCC	1 cut(s)	1759
Eco53kI	GAGCTC	1 cut(s)	1588
Eco57I	CTGAAG	4 cut(s)	579, 726, 1023, 1365
Eco88I	CYCGRG	1 cut(s)	648
EcoICRI	GAGCTC	1 cut(s)	1588
EcoRV	GATATC	2 cut(s)	78, 1048
EcoT14I	CCWWGG	1 cut(s)	783
EcoT38I	GRGCYC	1 cut(s)	1590
ErhI	CCWWGG	1 cut(s)	783
FaeI	CATG	6 cut(s)	165, 266, 1060, 1195, 1580, 1788
FalI	AAGNNNNNCTT	6 cut(s)	525, 557, 1239, 1271, 1363, 1395
FatI	CATG	6 cut(s)	161, 262, 1056, 1191, 1576, 1784
FauNDI	CATATG	1 cut(s)	970
FbaI	TGATCA	1 cut(s)	106
FokI	GGATG	3 cut(s)	116, 817, 1073
FriOI	GRGCYC	1 cut(s)	1590
FspBI	CTAG	4 cut(s)	1172, 1487, 1602, 1608
GsaI	CCCAGC	1 cut(s)	298
GsuI	CTGGAG	3 cut(s)	1235, 1334, 1574
HaeIII	GGCC	4 cut(s)	1400, 1535, 1698, 1753
HapII	CCGG	2 cut(s)	448, 589
Hin1II	CATG	6 cut(s)	165, 266, 1060, 1195, 1580, 1788
HindIII	AAGCTT	3 cut(s)	596, 632, 752
HinfI	GANTC	9 cut(s)	13, 651, 848, 944, 1134, 1195, 1288, 1427, 1742
HpaII	CCGG	2 cut(s)	448, 589
HphI	GGTGA	2 cut(s)	65, 1249
Hpy166II	GTNNAC	2 cut(s)	1152, 1484
Hpy8I	GTNNAC	2 cut(s)	1152, 1484
HpyAV	CCTTC	4 cut(s)	196, 1047, 1178, 1349
HpyCH4III	ACNGT	4 cut(s)	233, 1118, 1350, 1704
HpyCH4IV	ACGT	2 cut(s)	790, 964
HpyF10VI	GCNNNNNNNGC	8 cut(s)	16, 272, 281, 707, 710, 794, 1520, 1652
HpySE526I	ACGT	2 cut(s)	790, 964
Hsp92II	CATG	6 cut(s)	165, 266, 1060, 1195, 1580, 1788
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	9 cut(s)	71, 106, 439, 526, 583, 985, 1139, 1367, 1439
LguI	GCTCTTC	1 cut(s)	228
LmnI	GCTCC	6 cut(s)	163, 395, 658, 928, 1507, 1593
LweI	GCATC	1 cut(s)	1697
MaeI	CTAG	4 cut(s)	1172, 1487, 1602, 1608
MaeII	ACGT	2 cut(s)	790, 964
MaeIII	GTNAC	8 cut(s)	145, 233, 812, 920, 1099, 1118, 1237, 1428
MalI	GATC	9 cut(s)	73, 108, 441, 528, 585, 987, 1141, 1369, 1441
MboI	GATC	9 cut(s)	71, 106, 439, 526, 583, 985, 1139, 1367, 1439
MfeI	CAATTG	2 cut(s)	894, 1683
MflI	RGATCY	3 cut(s)	583, 985, 1439
MhlI	GDGCHC	4 cut(s)	400, 695, 1486, 1590
MlsI	TGGCCA	1 cut(s)	1698
MluCI	AATT	7 cut(s)	248, 666, 894, 958, 995, 1661, 1683
MluNI	TGGCCA	1 cut(s)	1698
MlyI	GAGTC	5 cut(s)	22, 660, 1128, 1436, 1736
MmeI	TCCRAC	3 cut(s)	882, 997, 1311
Mox20I	TGGCCA	1 cut(s)	1698
MroXI	GAANNNNTTC	1 cut(s)	1338
MscI	TGGCCA	1 cut(s)	1698
MslI	CAYNNNNRTG	2 cut(s)	390, 1736
Msp20I	TGGCCA	1 cut(s)	1698
MspA1I	CMGCKG	2 cut(s)	218, 1523
MspCI	CTTAAG	1 cut(s)	629
MspI	CCGG	2 cut(s)	448, 589
MunI	CAATTG	2 cut(s)	894, 1683
Mva1269I	GAATGC	4 cut(s)	113, 129, 413, 1780
MwoI	GCNNNNNNNGC	8 cut(s)	16, 272, 281, 707, 710, 794, 1520, 1652
NdeI	CATATG	1 cut(s)	970
NdeII	GATC	9 cut(s)	71, 106, 439, 526, 583, 985, 1139, 1367, 1439
NlaIII	CATG	6 cut(s)	165, 266, 1060, 1195, 1580, 1788
NlaIV	GGNNCC	2 cut(s)	930, 1035
NmeAIII	GCCGAG	1 cut(s)	341
NmuCI	GTSAC	5 cut(s)	145, 812, 920, 1237, 1428
NspI	RCATGY	1 cut(s)	266
PaeI	GCATGC	1 cut(s)	266
PaeR7I	CTCGAG	1 cut(s)	648
PagI	TCATGA	1 cut(s)	1784
PceI	AGGCCT	1 cut(s)	1400
PciSI	GCTCTTC	1 cut(s)	228
PctI	GAATGC	4 cut(s)	113, 129, 413, 1780
PdmI	GAANNNNTTC	1 cut(s)	1338
PfeI	GAWTC	4 cut(s)	848, 944, 1195, 1288
PflMI	CCANNNNNTGG	2 cut(s)	809, 1597
PleI	GAGTC	5 cut(s)	21, 659, 1128, 1435, 1736
PpsI	GAGTC	5 cut(s)	21, 659, 1128, 1435, 1736
Ppu21I	YACGTR	2 cut(s)	791, 965
Psp124BI	GAGCTC	1 cut(s)	1590
PspFI	CCCAGC	1 cut(s)	294
PspN4I	GGNNCC	2 cut(s)	930, 1035
PspPI	GGNCC	1 cut(s)	1759
PstNI	CAGNNNCTG	3 cut(s)	139, 989, 1312
PsuI	RGATCY	3 cut(s)	583, 985, 1439
PvuII	CAGCTG	2 cut(s)	218, 1523
RsaI	GTAC	4 cut(s)	888, 967, 1153, 1606
RsaNI	GTAC	4 cut(s)	887, 966, 1152, 1605
RseI	CAYNNNNRTG	2 cut(s)	390, 1736
SacI	GAGCTC	1 cut(s)	1590
SapI	GCTCTTC	1 cut(s)	228
Sau3AI	GATC	9 cut(s)	71, 106, 439, 526, 583, 985, 1139, 1367, 1439
Sau96I	GGNCC	1 cut(s)	1759
ScaI	AGTACT	1 cut(s)	1606
SchI	GAGTC	5 cut(s)	22, 660, 1128, 1436, 1736
SduI	GDGCHC	4 cut(s)	400, 695, 1486, 1590
SfaNI	GCATC	1 cut(s)	1697
SfcI	CTRYAG	1 cut(s)	675
Sfr274I	CTCGAG	1 cut(s)	648
SinI	GGWCC	1 cut(s)	1759
SlaI	CTCGAG	1 cut(s)	648
SmiMI	CAYNNNNRTG	2 cut(s)	390, 1736
SmlI	CTYRAG	7 cut(s)	338, 509, 599, 629, 648, 1124, 1256
SmoI	CTYRAG	7 cut(s)	338, 509, 599, 629, 648, 1124, 1256
SphI	GCATGC	1 cut(s)	266
Sse9I	AATT	7 cut(s)	248, 666, 894, 958, 995, 1661, 1683
SseBI	AGGCCT	1 cut(s)	1400
SsiI	CCGC	3 cut(s)	10, 1208, 1611
SspI	AATATT	1 cut(s)	1357
SspMI	CTAG	4 cut(s)	1172, 1487, 1602, 1608
SstI	GAGCTC	1 cut(s)	1590
StuI	AGGCCT	1 cut(s)	1400
StyI	CCWWGG	1 cut(s)	783
TaaI	ACNGT	4 cut(s)	233, 1118, 1350, 1704
TaiI	ACGT	2 cut(s)	793, 967
TaqI	TCGA	3 cut(s)	74, 424, 649
TaqII	GACCGA	1 cut(s)	390
TasI	AATT	7 cut(s)	248, 666, 894, 958, 995, 1661, 1683
TatI	WGTACW	2 cut(s)	1151, 1604
TfiI	GAWTC	4 cut(s)	848, 944, 1195, 1288
TscAI	CASTG	3 cut(s)	172, 405, 1154
TseFI	GTSAC	5 cut(s)	145, 812, 920, 1237, 1428
Tsp45I	GTSAC	5 cut(s)	145, 812, 920, 1237, 1428
TspDTI	ATGAA	9 cut(s)	186, 198, 261, 327, 1401, 1586, 1593, 1773, 1785
TspGWI	ACGGA	1 cut(s)	1432
TspRI	CASTG	3 cut(s)	172, 405, 1154
Van91I	CCANNNNNTGG	2 cut(s)	809, 1597
Vha464I	CTTAAG	1 cut(s)	629
VneI	GTGCAC	1 cut(s)	1482
VpaK11BI	GGWCC	1 cut(s)	1759
XapI	RAATTY	3 cut(s)	958, 995, 1661
XbaI	TCTAGA	1 cut(s)	1171
XceI	RCATGY	1 cut(s)	266
XcmI	CCANNNNNNNNNTGG	3 cut(s)	247, 872, 1154
XhoI	CTCGAG	1 cut(s)	648
XmnI	GAANNNNTTC	1 cut(s)	1338
XspI	CTAG	4 cut(s)	1172, 1487, 1602, 1608
ZrmI	AGTACT	1 cut(s)	1606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.