Rw2G024550

Filament-like plant protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
36258071 .. 36263160
5090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G024550.1

Sequence Viewer

Length: 1503 bp
ATGTTAGGCTGGGAGAAGTCTGAAAATGAAGTGTTGGGCTTAAAACAGCAACTTGAGGCTACAAATCAGAAAAACTCAGCTCTTAAAGACCGAGTTGGTCATCTTGATGGAGCACTGAAAGAATGCGTGAGGCAGCTTCGACAGGCAAGAGAAGATCAAGACCGGAATACTAATGAGGTTGTTGCTAAGAAAACTCGTGAATGGGATAGTTCAAAGTCCATACTTGAGAGCCAGCTTGCTGATCTCCAAGCACAACTTCAAGCTGCTAAAACTGAAGCTGCTGCCTCTATTGGTAAGGATCTCCGGTTAAAGCTTGAGGCTACTGAAAAAGAGAACTCTGCTCTTAAGCTTAGTCTTCGCTCTCGAGTCAAGGAGCTTGAAATTGCAACTATAGAGAGGGATTTGAGCACCCAAGCTGCTGAAGCAGTGAGTAAGCAACATTTAGAGAGCATAAAAAAGGTTGTTAAGCTTGAAGCTGAGTGCCGTAGGCTAAACGCCTTGGCACGTAAAGCACTACCAGATAATGGTCACAAATCCTTTTCTACATCCTCAGTTTATGTAGAATCCTTTATAGATAGCCAATCAGATAGTGGGGAGAGGGTACTGGCAATTGAGTTGGATACAGATAAAGCGAGTGACTTGGAGCCAAGTGAATGTGATTCAAGCCAGTCAAATTCACGTACATCTGCTCGTATCACAGATCCTGATAAATTTAATAAAGAAAAAGGTGTTGGAAAAAATCTAATGGTTCCTTCAGTAGATATCAATCTCATGGATGATTTTCTTGAAATGGAAAGGTTTGCTGCAACGCCAGTTACAAAAAATAAGAACTGTTACCTTGAGGCAGGACTCAGATCAAACCAGTGTACTGCTGGAAAAAACCTTCTAGAAACTGAACTTGAAACCATGATTCAAAGGACTGCGGAACTGGAGGGGAAGTTAGAGAAGATGGTGACAGAAAAAGTGGAACTTGAGATGACTATGACTGAGTGCGAAAAGGAGATTCAGACATTAAAAAGTCAGCTACTGGAGGCTGATTTGAAGTTGGAAGACCTTCAAACACAGTTGAATATTGCAAATGGATCAAGGTATGCTTCAGATGAAGAAGTAAAGGCCTGTCAAACAATGAGAGAAGTGGCTGAGTCACAACTAAGATCCGTTCAAACTGAACTTGACTGCTTGATTTTAAAAGTCGGTGCACTAGAGGAAGATGTCTCAAAGGAGCGAGCTTTATCAGCTGAAAATGAGGCCAAATGCCAGAAAGTTGAGAATGAGCTATTGATAATGAAACATGAAGCTGAGCTCCAGCGTATGGCTAGTACTAGCGGTGATTTGAAGATACAGCAGGAGAAAGAGCTGGCATTGGCTGCAAGTAAATTTGCAGAGTGCCAGAAAACAATTGCATCTCTTGGCCAACAGTTGAAATCACTTGCAACATTGGAGGACATCTTAATGGACTCAGATAGGCCATCAGACCTGATTGATGAAGCTTTGCATTCATGA

Protein Analysis

500

Amino Acids

55.75

Weight (kDa)

4.95

Isoelectric Point (pI)

43.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FPP PF05911 2 - 94 6.5e-25 Filament-like plant protein, long coiled-coil
FPP PF05911 85 - 173 1.8e-21 Filament-like plant protein, long coiled-coil
FPP PF05911 221 - 287 3.3e-08 Filament-like plant protein, long coiled-coil
FPP PF05911 305 - 479 2.1e-23 Filament-like plant protein, long coiled-coil
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 524, 1312
AciI CCGC 2 cut(s) 923, 1326
AclWI GGATC 4 cut(s) 306, 695, 1090, 1149
AcoI YGGCCR 1 cut(s) 1411
AcsI RAATTY 3 cut(s) 673, 710, 1376
AcuI CTGAAG 4 cut(s) 294, 441, 738, 1080
AfaI GTAC 4 cut(s) 603, 682, 868, 1321
AfiI CCNNNNNNNGG 2 cut(s) 524, 1312
AflII CTTAAG 1 cut(s) 344
AjuI GAANNNNNNNTTGG 4 cut(s) 240, 272, 714, 746
Alw21I GWGCWC 4 cut(s) 115, 410, 1201, 1305
Alw26I GTCTC 1 cut(s) 1219
Alw44I GTGCAC 1 cut(s) 1197
AlwI GGATC 4 cut(s) 306, 695, 1090, 1149
AlwNI CAGNNNCTG 2 cut(s) 704, 1027
Ama87I CYCGRG 1 cut(s) 363
AoxI GGCC 4 cut(s) 1113, 1248, 1411, 1466
ApaLI GTGCAC 1 cut(s) 1197
ApeKI GCWGC 7 cut(s) 133, 263, 278, 281, 416, 803, 1367
ApoI RAATTY 3 cut(s) 673, 710, 1376
Asp700I GAANNNNTTC 1 cut(s) 1053
AsuHPI GGTGA 2 cut(s) 964, 1340
AvaI CYCGRG 1 cut(s) 363
BaeGI GKGCMC 1 cut(s) 1201
BalI TGGCCA 1 cut(s) 1413
BanII GRGCYC 1 cut(s) 1305
BauI CACGAG 1 cut(s) 195
BbsI GAAGAC 2 cut(s) 347, 1056
Bbv12I GWGCWC 4 cut(s) 115, 410, 1201, 1305
BbvI GCAGC 7 cut(s) 145, 250, 265, 268, 403, 790, 1354
BccI CCATC 3 cut(s) 101, 943, 1477
BceAI ACGGC 1 cut(s) 468
BciVI GTATCC 1 cut(s) 613
BcoDI GTCTC 1 cut(s) 1219
BfaI CTAG 4 cut(s) 887, 1202, 1317, 1323
BfmI CTRYAG 1 cut(s) 390
BfrI CTTAAG 1 cut(s) 344
BfuI GTATCC 1 cut(s) 613
BisI GCNGC 7 cut(s) 134, 264, 279, 282, 417, 804, 1368
BlpI GCTNAGC 1 cut(s) 1299
BlsI GCNGC 7 cut(s) 135, 265, 280, 283, 418, 805, 1369
BmcAI AGTACT 1 cut(s) 1321
BmeT110I CYCGRG 1 cut(s) 363
BmiI GGNNCC 2 cut(s) 645, 750
BmsI GCATC 1 cut(s) 1412
BpiI GAAGAC 2 cut(s) 347, 1056
BpmI CTGGAG 3 cut(s) 950, 1049, 1289
Bpu1102I GCTNAGC 1 cut(s) 1299
BpuEI CTTGAG 5 cut(s) 74, 245, 335, 860, 992
BsaAI YACGTR 2 cut(s) 506, 680
BsaBI GATNNNNATC 1 cut(s) 765
BsaJI CCNNGG 1 cut(s) 498
BsaWI WCCGGW 2 cut(s) 162, 303
BsaXI ACNNNNNCTCC 2 cut(s) 923, 953
Bsc4I CCNNNNNNNGG 2 cut(s) 524, 1312
Bse1I ACTGG 6 cut(s) 609, 667, 812, 862, 933, 1032
Bse8I GATNNNNATC 1 cut(s) 765
BseDI CCNNGG 1 cut(s) 498
BseGI GGATG 2 cut(s) 545, 781
BseJI GATNNNNATC 1 cut(s) 765
BseLI CCNNNNNNNGG 2 cut(s) 524, 1312
BseMII CTCAG 8 cut(s) 90, 468, 564, 865, 978, 1131, 1290, 1473
BseNI ACTGG 6 cut(s) 609, 667, 812, 862, 933, 1032
BseSI GKGCMC 1 cut(s) 1201
BseXI GCAGC 7 cut(s) 145, 250, 265, 268, 403, 790, 1354
BseYI CCCAGC 1 cut(s) 9
BshFI GGCC 4 cut(s) 1115, 1250, 1413, 1468
BsiHKAI GWGCWC 4 cut(s) 115, 410, 1201, 1305
BsiHKCI CYCGRG 1 cut(s) 363
BsiSI CCGG 2 cut(s) 163, 304
BslI CCNNNNNNNGG 2 cut(s) 524, 1312
BsmAI GTCTC 1 cut(s) 1219
BsmI GAATGC 2 cut(s) 128, 1495
BsnI GGCC 4 cut(s) 1115, 1250, 1413, 1468
BsoBI CYCGRG 1 cut(s) 363
Bsp1286I GDGCHC 4 cut(s) 115, 410, 1201, 1305
Bsp143I GATC 7 cut(s) 154, 241, 298, 700, 854, 1082, 1154
Bsp1720I GCTNAGC 1 cut(s) 1299
BspACI CCGC 2 cut(s) 923, 1326
BspANI GGCC 4 cut(s) 1115, 1250, 1413, 1468
BspCNI CTCAG 8 cut(s) 89, 469, 563, 864, 979, 1132, 1291, 1472
BspHI TCATGA 1 cut(s) 1499
BspLI GGNNCC 2 cut(s) 645, 750
BspPI GGATC 4 cut(s) 306, 695, 1090, 1149
BspTI CTTAAG 1 cut(s) 344
BsrI ACTGG 6 cut(s) 609, 667, 812, 862, 933, 1032
BssECI CCNNGG 1 cut(s) 498
BssMI GATC 7 cut(s) 154, 241, 298, 700, 854, 1082, 1154
BssSI CACGAG 1 cut(s) 195
BssT1I CCWWGG 1 cut(s) 498
Bst2BI CACGAG 1 cut(s) 195
Bst4CI ACNGT 3 cut(s) 833, 1065, 1419
BstAFI CTTAAG 1 cut(s) 344
BstAPI GCANNNNNTGC 1 cut(s) 1367
BstBAI YACGTR 2 cut(s) 506, 680
BstC8I GCNNGC 4 cut(s) 233, 237, 1227, 1359
BstF5I GGATG 2 cut(s) 545, 781
BstKTI GATC 7 cut(s) 157, 244, 301, 703, 857, 1085, 1157
BstMAI GTCTC 1 cut(s) 1219
BstMBI GATC 7 cut(s) 154, 241, 298, 700, 854, 1082, 1154
BstMWI GCNNNNNNNGC 4 cut(s) 422, 509, 1235, 1367
BstSFI CTRYAG 1 cut(s) 390
BstSLI GKGCMC 1 cut(s) 1201
BstV1I GCAGC 7 cut(s) 145, 250, 265, 268, 403, 790, 1354
BstV2I GAAGAC 2 cut(s) 347, 1056
BstX2I RGATCY 3 cut(s) 298, 700, 1154
BstYI RGATCY 3 cut(s) 298, 700, 1154
BsuI GTATCC 1 cut(s) 613
BsuRI GGCC 4 cut(s) 1115, 1250, 1413, 1468
BtsCI GGATG 2 cut(s) 545, 781
BtsI GCAGTG 1 cut(s) 432
BtsIMutI CAGTG 3 cut(s) 113, 432, 869
Cac8I GCNNGC 4 cut(s) 233, 237, 1227, 1359
CaiI CAGNNNCTG 2 cut(s) 704, 1027
CciI TCATGA 1 cut(s) 1499
Csp6I GTAC 4 cut(s) 602, 681, 867, 1320
CviAII CATG 4 cut(s) 772, 907, 1292, 1500
CviQI GTAC 4 cut(s) 602, 681, 867, 1320
DpnI GATC 7 cut(s) 156, 243, 300, 702, 856, 1084, 1156
DpnII GATC 7 cut(s) 154, 241, 298, 700, 854, 1082, 1154
DraI TTTAAA 1 cut(s) 1188
EaeI YGGCCR 1 cut(s) 1411
Ecl136II GAGCTC 1 cut(s) 1303
Eco130I CCWWGG 1 cut(s) 498
Eco147I AGGCCT 1 cut(s) 1115
Eco24I GRGCYC 1 cut(s) 1305
Eco32I GATATC 1 cut(s) 763
Eco53kI GAGCTC 1 cut(s) 1303
Eco57I CTGAAG 4 cut(s) 294, 441, 738, 1080
Eco88I CYCGRG 1 cut(s) 363
EcoICRI GAGCTC 1 cut(s) 1303
EcoRV GATATC 1 cut(s) 763
EcoT14I CCWWGG 1 cut(s) 498
EcoT38I GRGCYC 1 cut(s) 1305
ErhI CCWWGG 1 cut(s) 498
FaeI CATG 4 cut(s) 775, 910, 1295, 1503
FalI AAGNNNNNCTT 6 cut(s) 240, 272, 954, 986, 1078, 1110
FatI CATG 4 cut(s) 771, 906, 1291, 1499
Fnu4HI GCNGC 7 cut(s) 134, 264, 279, 282, 417, 804, 1368
FokI GGATG 2 cut(s) 532, 788
FriOI GRGCYC 1 cut(s) 1305
Fsp4HI GCNGC 7 cut(s) 134, 264, 279, 282, 417, 804, 1368
FspBI CTAG 4 cut(s) 887, 1202, 1317, 1323
GluI GCNGC 7 cut(s) 134, 264, 279, 282, 417, 804, 1368
GsaI CCCAGC 1 cut(s) 13
GsuI CTGGAG 3 cut(s) 950, 1049, 1289
HaeIII GGCC 4 cut(s) 1115, 1250, 1413, 1468
HapII CCGG 2 cut(s) 163, 304
Hin1II CATG 4 cut(s) 775, 910, 1295, 1503
HindIII AAGCTT 4 cut(s) 311, 347, 467, 1488
HinfI GANTC 8 cut(s) 366, 563, 659, 849, 910, 1003, 1142, 1457
HpaII CCGG 2 cut(s) 163, 304
HphI GGTGA 2 cut(s) 964, 1340
Hpy166II GTNNAC 2 cut(s) 867, 1199
Hpy188I TCNGA 8 cut(s) 22, 69, 586, 854, 1008, 1099, 1462, 1474
Hpy188III TCNNGA 8 cut(s) 104, 158, 197, 363, 704, 785, 887, 1500
Hpy8I GTNNAC 2 cut(s) 867, 1199
HpyAV CCTTC 3 cut(s) 762, 893, 1064
HpyCH4III ACNGT 3 cut(s) 833, 1065, 1419
HpyCH4IV ACGT 2 cut(s) 505, 679
HpyCH4V TGCA 9 cut(s) 386, 806, 1076, 1199, 1370, 1382, 1403, 1433, 1495
HpyF10VI GCNNNNNNNGC 4 cut(s) 422, 509, 1235, 1367
HpySE526I ACGT 2 cut(s) 505, 679
Hsp92II CATG 4 cut(s) 775, 910, 1295, 1503
Kzo9I GATC 7 cut(s) 154, 241, 298, 700, 854, 1082, 1154
LmnI GCTCC 5 cut(s) 110, 373, 643, 1222, 1308
Lsp1109I GCAGC 7 cut(s) 145, 250, 265, 268, 403, 790, 1354
LweI GCATC 1 cut(s) 1412
MaeI CTAG 4 cut(s) 887, 1202, 1317, 1323
MaeII ACGT 2 cut(s) 505, 679
MaeIII GTNAC 6 cut(s) 527, 635, 814, 833, 952, 1143
MalI GATC 7 cut(s) 156, 243, 300, 702, 856, 1084, 1156
MboI GATC 7 cut(s) 154, 241, 298, 700, 854, 1082, 1154
MboII GAAGA 7 cut(s) 164, 347, 958, 1061, 1115, 1220, 1348
MfeI CAATTG 2 cut(s) 609, 1398
MflI RGATCY 3 cut(s) 298, 700, 1154
MhlI GDGCHC 4 cut(s) 115, 410, 1201, 1305
MlsI TGGCCA 1 cut(s) 1413
MluCI AATT 6 cut(s) 381, 609, 673, 710, 1376, 1398
MluNI TGGCCA 1 cut(s) 1413
MlyI GAGTC 4 cut(s) 375, 843, 1151, 1451
MmeI TCCRAC 3 cut(s) 597, 712, 1026
Mox20I TGGCCA 1 cut(s) 1413
MroXI GAANNNNTTC 1 cut(s) 1053
MscI TGGCCA 1 cut(s) 1413
MseI TTAA 9 cut(s) 41, 84, 308, 345, 465, 714, 1013, 1187, 1451
MslI CAYNNNNRTG 2 cut(s) 105, 1451
Msp20I TGGCCA 1 cut(s) 1413
MspA1I CMGCKG 1 cut(s) 1238
MspCI CTTAAG 1 cut(s) 344
MspI CCGG 2 cut(s) 163, 304
MunI CAATTG 2 cut(s) 609, 1398
Mva1269I GAATGC 2 cut(s) 128, 1495
MwoI GCNNNNNNNGC 4 cut(s) 422, 509, 1235, 1367
NdeII GATC 7 cut(s) 154, 241, 298, 700, 854, 1082, 1154
NlaIII CATG 4 cut(s) 775, 910, 1295, 1503
NlaIV GGNNCC 2 cut(s) 645, 750
NmuCI GTSAC 4 cut(s) 527, 635, 952, 1143
PaeR7I CTCGAG 1 cut(s) 363
PagI TCATGA 1 cut(s) 1499
PceI AGGCCT 1 cut(s) 1115
PctI GAATGC 2 cut(s) 128, 1495
PdmI GAANNNNTTC 1 cut(s) 1053
PfeI GAWTC 4 cut(s) 563, 659, 910, 1003
PflMI CCANNNNNTGG 2 cut(s) 524, 1312
PkrI GCNGC 7 cut(s) 135, 265, 280, 283, 418, 805, 1369
PleI GAGTC 4 cut(s) 374, 843, 1150, 1451
PpsI GAGTC 4 cut(s) 374, 843, 1150, 1451
Ppu21I YACGTR 2 cut(s) 506, 680
Psp124BI GAGCTC 1 cut(s) 1305
PspFI CCCAGC 1 cut(s) 9
PspN4I GGNNCC 2 cut(s) 645, 750
PstNI CAGNNNCTG 2 cut(s) 704, 1027
PsuI RGATCY 3 cut(s) 298, 700, 1154
PvuII CAGCTG 1 cut(s) 1238
RsaI GTAC 4 cut(s) 603, 682, 868, 1321
RsaNI GTAC 4 cut(s) 602, 681, 867, 1320
RseI CAYNNNNRTG 2 cut(s) 105, 1451
SacI GAGCTC 1 cut(s) 1305
SaqAI TTAA 9 cut(s) 41, 84, 308, 345, 465, 714, 1013, 1187, 1451
SatI GCNGC 7 cut(s) 134, 264, 279, 282, 417, 804, 1368
Sau3AI GATC 7 cut(s) 154, 241, 298, 700, 854, 1082, 1154
ScaI AGTACT 1 cut(s) 1321
SchI GAGTC 4 cut(s) 375, 843, 1151, 1451
SduI GDGCHC 4 cut(s) 115, 410, 1201, 1305
SfaNI GCATC 1 cut(s) 1412
SfcI CTRYAG 1 cut(s) 390
Sfr274I CTCGAG 1 cut(s) 363
SlaI CTCGAG 1 cut(s) 363
SmiMI CAYNNNNRTG 2 cut(s) 105, 1451
SmlI CTYRAG 7 cut(s) 53, 224, 314, 344, 363, 839, 971
SmoI CTYRAG 7 cut(s) 53, 224, 314, 344, 363, 839, 971
Sse9I AATT 6 cut(s) 381, 609, 673, 710, 1376, 1398
SseBI AGGCCT 1 cut(s) 1115
SsiI CCGC 2 cut(s) 923, 1326
SspI AATATT 1 cut(s) 1072
SspMI CTAG 4 cut(s) 887, 1202, 1317, 1323
SstI GAGCTC 1 cut(s) 1305
StuI AGGCCT 1 cut(s) 1115
StyI CCWWGG 1 cut(s) 498
TaaI ACNGT 3 cut(s) 833, 1065, 1419
TaiI ACGT 2 cut(s) 508, 682
TaqI TCGA 2 cut(s) 139, 364
TaqII GACCGA 1 cut(s) 105
TasI AATT 6 cut(s) 381, 609, 673, 710, 1376, 1398
TatI WGTACW 2 cut(s) 866, 1319
TfiI GAWTC 4 cut(s) 563, 659, 910, 1003
Tru1I TTAA 9 cut(s) 41, 84, 308, 345, 465, 714, 1013, 1187, 1451
Tru9I TTAA 9 cut(s) 41, 84, 308, 345, 465, 714, 1013, 1187, 1451
TscAI CASTG 3 cut(s) 120, 432, 869
TseFI GTSAC 4 cut(s) 527, 635, 952, 1143
TseI GCWGC 7 cut(s) 133, 263, 278, 281, 416, 803, 1367
Tsp45I GTSAC 4 cut(s) 527, 635, 952, 1143
TspDTI ATGAA 6 cut(s) 42, 1116, 1301, 1308, 1488, 1500
TspGWI ACGGA 1 cut(s) 1147
TspRI CASTG 3 cut(s) 120, 432, 869
Van91I CCANNNNNTGG 2 cut(s) 524, 1312
Vha464I CTTAAG 1 cut(s) 344
VneI GTGCAC 1 cut(s) 1197
XapI RAATTY 3 cut(s) 673, 710, 1376
XbaI TCTAGA 1 cut(s) 886
XcmI CCANNNNNNNNNTGG 2 cut(s) 587, 869
XhoI CTCGAG 1 cut(s) 363
XmnI GAANNNNTTC 1 cut(s) 1053
XspI CTAG 4 cut(s) 887, 1202, 1317, 1323
ZrmI AGTACT 1 cut(s) 1321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.