Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001130

Physical Location & Seq

Genomic Coordinates Reverse (-)

29497690 .. 29499256

Gene Structure 1567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g31180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGACGATTGAGAGGGACTTGAGTGCTCAAGCAGCTGAAACAGCCAGTAAGCAACATTTAGAGAGTATAAAGAAGGTTGCAAAGCTTGAAGCTGAGTGCCGGAGGCTAAAAGCTTTGGGTAGCAAAACACCTGTTGTTAATGATCACAAGTCCAGTGCTGCTTCTTCAATTTATGTGGAGTCTTGCATGGATAGTCAATCGGACAGTGGAGAGCGGCTAAATGTGATGGAGATAGATTCTCAAAAAATGATTGGCTCTGAGGCAAACAAGCGTGACCTGACTTTCTCTGACTCTTGGGCTTCAGCTCTGGTTGCTGAGCTTGATCAACTCAATAACGAAAAGGCTGTAAGCAGAAATTTGCCTGCTCCTTCCATTGATATTGATCTCATGGACGATTTTCTTGAGATGGAACGACTTGCTTCGTTGCCACAGACTGGGAATGGAACTAGTTGTCTGGAATCAGAAGCCATAGTTAATCAAACCAATAATGAAGAACGTGCCTTGAGAGCTGAACTTGAAGCCATGAGCCATCGGACAGCCGAACTTGAGGACAAGTTAGAAAAGTTGCAAGTAGAGAAAGAAAGATTAGAGGTAGAGAATGCTGAACTTGAAGCTATGAGTCATCAGGCAGCCGAATTAGAGGACATGTTAAAAAAGATGGAAGTCGAGAGAGAAAATTTGGAAGTAGAGAAAGCTGAACTAAAAACTGCTTTATCCAAAAGTCAAGAATGTTATGTGGCAGCAGAGTTTCAGCTTAAAGAAGCAGAAATGAAGTTAGAGGAGTTACAAAAGGAGCTAAGCATTGCAAAAGAATCAAAGCAGACTATTGAGTCTCAGCTTATTAGCATGGAAGCAGAGGCGTGGACCATGTCTGCTAAGGTTGATTCTTTGGAAGCAGAGGTTCAAAGGGAGAGGGCTTTGTCTGCAGAAATTGCGGTCAAATGTCAAGATTTAGAGGAGGAGCTATCAAGAAAAAACGAAGAAGTCAAGTTTCAAAAAACTGCTTGCTCGAATGGTGAATTGAAGAGAAAGCAGGAAGACCTAGCTGTAGCAGCTGGAAAGCTTGCCGATTGCCAGAAGACAATAGCGTCTCTAGGAAATCAGCTCAAATCTCTAGCGACGCTAGAAGATTTTCTGATAGACTCCGGAAGCCTCCCAGGGTTCACTGCCGTTGCACCACAGGTTCCTAAAGCTGATGAAAATTGGAAGTTGCATTCCAATGTAACATATTCACCTAAAAGAGATTCTGTGTCAAAACCAGCTGATGAGAGTTGTGGTCCATCAGTAAACAGGAGTAGAAATGAGGACAACTCCCCACCATCTTCATCTTCGTCAACCTCATCCACTGTGTTGTCGACTCATGTCAGCTCTGAGAAGAACCGAAATGGGTTCGCAAAGTTCTTCTCCCGAACCAAGAGTGGGATACGACTAGAAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FPP

Protein Analysis

480

Amino Acids

52.99

Weight (kDa)

4.88

Isoelectric Point (pI)

51.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FPP	PF05911	4 - 39	1e-11	Filament-like plant protein, long coiled-coil
FPP	PF05911	49 - 173	3.4e-12	Filament-like plant protein, long coiled-coil
FPP	PF05911	187 - 374	1.7e-16	Filament-like plant protein, long coiled-coil

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05270 AT3G05270 AT3G05270
fragaria_vesca	FvH4_1g25530 FvH4_1g25530 FvH4_1g25530 FvH4_1g25530 FvH4_1g25530 FvH4_1g25530 FvH4_1g25530 FvH4_1g25530 FvH4_2g26980 FvH4_2g26980 FvH4_2g26980 FvH4_2g26980 FvH4_2g26980
malus_domestica	MD08G1162500.v1.1 MD15G1138800.v1.1 MD15G1348000.v1.1
prunus_persica	Prupe.1G495600_v2.0.a1 Prupe.1G495600_v2.0.a1 Prupe.1G495600_v2.0.a1 Prupe.1G495600_v2.0.a1 Prupe.1G495600_v2.0.a1 Prupe.1G495600_v2.0.a1 Prupe.1G495600_v2.0.a1 Prupe.4G281900_v2.0.a1 Prupe.4G281900_v2.0.a1 Prupe.4G281900_v2.0.a1 Prupe.4G281900_v2.0.a1
pyrus_communis	pycom08g14040 pycom15g12550 pycom15g31180
rosa_chinensis	RchiOBHm_Chr2g0123661 RchiOBHm_Chr6g0295851
rosa_laevigata	RLG00000011762 RLG00000018767
rosa_multiflora	Rmu_sc0003139.1_g000002 Rmu_sc0004915.1_g000004 Rmu_sc0004915.1_g000005
rosa_roxburghii	Rroxscaffold_2G00120460 Rroxscaffold_7G00172110
rosa_rugosa	Rorug02G0247200 Rorug06G0254500 Rorug06G0254600 Rorug06G0254600 Rorug06G0254700 Rorug06G0254800
rosa_samantha	Rh2AG306200 Rh2BG314400 Rh2CG292600 Rh2DG329900 Rh6AG368300 Rh6BG376100 Rh6CG382200 Rh6DG368800
rosa_wichuraiana	Rw2G024550 Rw6G032110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	829, 1087
AccB7I	CCANNNNNTGG	1 cut(s)	434
AccBSI	CCGCTC	1 cut(s)	214
AccI	GTMKAC	1 cut(s)	1355
AccIII	TCCGGA	1 cut(s)	1145
AciI	CCGC	2 cut(s)	214, 935
AcsI	RAATTY	3 cut(s)	355, 676, 1434
AcuI	CTGAAG	1 cut(s)	285
AfiI	CCNNNNNNNGG	2 cut(s)	434, 1419
AflIII	ACRYGT	1 cut(s)	645
AgsI	TTSAA	7 cut(s)	89, 168, 518, 611, 905, 995, 1024
AhlI	ACTAGT	1 cut(s)	446
AjnI	CCWGG	1 cut(s)	1156
Alw21I	GWGCWC	1 cut(s)	28
Alw26I	GTCTC	2 cut(s)	837, 1095
Aor13HI	TCCGGA	1 cut(s)	1145
ApeKI	GCWGC	5 cut(s)	32, 158, 629, 740, 1052
ApoI	RAATTY	3 cut(s)	355, 676, 1434
Asp700I	GAANNNNTTC	1 cut(s)	1131
AspS9I	GGNCC	2 cut(s)	864, 1277
AsuHPI	GGTGA	2 cut(s)	1028, 1224
AvaII	GGWCC	2 cut(s)	864, 1277
BbsI	GAAGAC	2 cut(s)	1044, 1085
Bbv12I	GWGCWC	1 cut(s)	28
BbvI	GCAGC	5 cut(s)	44, 145, 641, 752, 1064
BccI	CCATC	6 cut(s)	220, 400, 537, 652, 1288, 1327
BceAI	ACGGC	1 cut(s)	1154
BciT130I	CCWGG	1 cut(s)	1158
BciVI	GTATCC	1 cut(s)	1416
BclI	TGATCA	2 cut(s)	142, 322
BcoDI	GTCTC	2 cut(s)	837, 1095
BcuI	ACTAGT	1 cut(s)	446
BfaI	CTAG	6 cut(s)	447, 1043, 1094, 1115, 1124, 1430
BfmI	CTRYAG	2 cut(s)	924, 1047
BfuI	GTATCC	1 cut(s)	1416
BisI	GCNGC	6 cut(s)	33, 159, 215, 630, 741, 1053
BlpI	GCTNAGC	2 cut(s)	315, 797
BlsI	GCNGC	6 cut(s)	34, 160, 216, 631, 742, 1054
Bme1390I	CCNGG	1 cut(s)	1158
Bme18I	GGWCC	2 cut(s)	864, 1277
BmgT120I	GGNCC	2 cut(s)	864, 1277
BmiI	GGNNCC	1 cut(s)	1185
BmrFI	CCNGG	1 cut(s)	1158
BmrI	ACTGGG	1 cut(s)	444
BmuI	ACTGGG	1 cut(s)	444
BoxI	GACNNNNGTC	1 cut(s)	1361
BpiI	GAAGAC	2 cut(s)	1044, 1085
BplI	GAGNNNNNCTC	2 cut(s)	1295, 1327
Bpu10I	CCTNAGC	1 cut(s)	876
Bpu1102I	GCTNAGC	2 cut(s)	315, 797
BpuEI	CTTGAG	5 cut(s)	12, 40, 422, 523, 566
BsaBI	GATNNNNATC	1 cut(s)	381
BsaJI	CCNNGG	2 cut(s)	1156, 1157
BsaWI	WCCGGW	1 cut(s)	1145
Bsc4I	CCNNNNNNNGG	2 cut(s)	434, 1419
Bse1I	ACTGG	3 cut(s)	45, 153, 439
Bse3DI	GCAATG	1 cut(s)	801
Bse8I	GATNNNNATC	1 cut(s)	381
BseAI	TCCGGA	1 cut(s)	1145
BseBI	CCWGG	1 cut(s)	1158
BseDI	CCNNGG	2 cut(s)	1156, 1157
BseGI	GGATG	1 cut(s)	1340
BseJI	GATNNNNATC	1 cut(s)	381
BseLI	CCNNNNNNNGG	2 cut(s)	434, 1419
BseMI	GCAATG	1 cut(s)	801
BseMII	CTCAG	5 cut(s)	84, 249, 306, 848, 1362
BseNI	ACTGG	3 cut(s)	45, 153, 439
BseRI	GAGGAG	3 cut(s)	794, 971, 974
BseXI	GCAGC	5 cut(s)	44, 145, 641, 752, 1064
BsiHKAI	GWGCWC	1 cut(s)	28
BsiSI	CCGG	2 cut(s)	100, 1146
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	2 cut(s)	434, 1419
BsmAI	GTCTC	2 cut(s)	837, 1095
BsmBI	CGTCTC	1 cut(s)	1095
BsmFI	GGGAC	1 cut(s)	29
BsmI	GAATGC	2 cut(s)	604, 1213
Bsp1286I	GDGCHC	1 cut(s)	28
Bsp13I	TCCGGA	1 cut(s)	1145
Bsp143I	GATC	3 cut(s)	142, 322, 382
Bsp1720I	GCTNAGC	2 cut(s)	315, 797
BspACI	CCGC	2 cut(s)	214, 935
BspCNI	CTCAG	5 cut(s)	85, 250, 307, 847, 1363
BspEI	TCCGGA	1 cut(s)	1145
BspLI	GGNNCC	1 cut(s)	1185
BspMAI	CTGCAG	1 cut(s)	928
BsrBI	CCGCTC	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	801
BsrI	ACTGG	3 cut(s)	45, 153, 439
BssECI	CCNNGG	2 cut(s)	1156, 1157
BssMI	GATC	3 cut(s)	142, 322, 382
Bst2UI	CCWGG	1 cut(s)	1158
Bst4CI	ACNGT	2 cut(s)	206, 1348
Bst6I	CTCTTC	1 cut(s)	1019
BstAPI	GCANNNNNTGC	1 cut(s)	932
BstC8I	GCNNGC	3 cut(s)	363, 1006, 1065
BstDEI	CTNAG	7 cut(s)	93, 258, 315, 797, 834, 876, 1371
BstF5I	GGATG	1 cut(s)	1340
BstKTI	GATC	3 cut(s)	145, 325, 385
BstMAI	GTCTC	2 cut(s)	837, 1095
BstMBI	GATC	3 cut(s)	142, 322, 382
BstMWI	GCNNNNNNNGC	7 cut(s)	32, 41, 311, 506, 923, 932, 1052
BstNI	CCWGG	1 cut(s)	1158
BstNSI	RCATGY	1 cut(s)	649
BstPAI	GACNNNNGTC	1 cut(s)	1361
BstSCI	CCNGG	1 cut(s)	1156
BstSFI	CTRYAG	2 cut(s)	924, 1047
BstV1I	GCAGC	5 cut(s)	44, 145, 641, 752, 1064
BstV2I	GAAGAC	2 cut(s)	1044, 1085
BsuI	GTATCC	1 cut(s)	1416
BtsCI	GGATG	1 cut(s)	1340
BtsI	GCAGTG	1 cut(s)	1164
BtsIMutI	CAGTG	4 cut(s)	160, 211, 1164, 1344
Cac8I	GCNNGC	3 cut(s)	363, 1006, 1065
Cfr13I	GGNCC	2 cut(s)	864, 1277
CseI	GACGC	2 cut(s)	1077, 1129
CspCI	CAANNNNNGTGG	2 cut(s)	156, 191
CviAII	CATG	7 cut(s)	187, 388, 523, 646, 847, 868, 1361
DdeI	CTNAG	7 cut(s)	93, 258, 315, 797, 834, 876, 1371
DpnI	GATC	3 cut(s)	144, 324, 384
DpnII	GATC	3 cut(s)	142, 322, 382
DrdI	GACNNNNNNGTC	2 cut(s)	829, 1087
DseDI	GACNNNNNNGTC	2 cut(s)	829, 1087
Eam1104I	CTCTTC	1 cut(s)	1019
EarI	CTCTTC	1 cut(s)	1019
Eco47I	GGWCC	2 cut(s)	864, 1277
Eco57I	CTGAAG	1 cut(s)	285
EcoRII	CCWGG	1 cut(s)	1156
Esp3I	CGTCTC	1 cut(s)	1095
FaeI	CATG	7 cut(s)	190, 391, 526, 649, 850, 871, 1364
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	7 cut(s)	186, 387, 522, 645, 846, 867, 1360
FbaI	TGATCA	2 cut(s)	142, 322
FblI	GTMKAC	1 cut(s)	1355
Fnu4HI	GCNGC	6 cut(s)	33, 159, 215, 630, 741, 1053
FokI	GGATG	1 cut(s)	1327
Fsp4HI	GCNGC	6 cut(s)	33, 159, 215, 630, 741, 1053
FspBI	CTAG	6 cut(s)	447, 1043, 1094, 1115, 1124, 1430
GluI	GCNGC	6 cut(s)	33, 159, 215, 630, 741, 1053
HapII	CCGG	2 cut(s)	100, 1146
HgaI	GACGC	2 cut(s)	1077, 1129
Hin1II	CATG	7 cut(s)	190, 391, 526, 649, 850, 871, 1364
HincII	GTYRAC	2 cut(s)	1335, 1356
HindII	GTYRAC	2 cut(s)	1335, 1356
HindIII	AAGCTT	3 cut(s)	83, 111, 1061
HpaII	CCGG	2 cut(s)	100, 1146
HphI	GGTGA	2 cut(s)	1028, 1224
Hpy166II	GTNNAC	5 cut(s)	864, 1164, 1288, 1335, 1356
Hpy188I	TCNGA	7 cut(s)	202, 259, 289, 463, 534, 1137, 1372
Hpy188III	TCNNGA	8 cut(s)	401, 455, 667, 725, 947, 969, 1146, 1407
Hpy8I	GTNNAC	5 cut(s)	864, 1164, 1288, 1335, 1356
Hpy99I	CGWCG	1 cut(s)	1123
HpyAV	CCTTC	2 cut(s)	67, 378
HpyCH4III	ACNGT	2 cut(s)	206, 1348
HpyCH4IV	ACGT	1 cut(s)	496
HpyCH4V	TGCA	7 cut(s)	80, 186, 568, 806, 926, 1175, 1213
HpyF10VI	GCNNNNNNNGC	7 cut(s)	32, 41, 311, 506, 923, 932, 1052
HpyF3I	CTNAG	7 cut(s)	93, 258, 315, 797, 834, 876, 1371
HpySE526I	ACGT	1 cut(s)	496
Hsp92II	CATG	7 cut(s)	190, 391, 526, 649, 850, 871, 1364
Kpn2I	TCCGGA	1 cut(s)	1145
Ksp22I	TGATCA	2 cut(s)	142, 322
Kzo9I	GATC	3 cut(s)	142, 322, 382
LmnI	GCTCC	3 cut(s)	370, 793, 961
Lsp1109I	GCAGC	5 cut(s)	44, 145, 641, 752, 1064
MaeI	CTAG	6 cut(s)	447, 1043, 1094, 1115, 1124, 1430
MaeII	ACGT	1 cut(s)	496
MaeIII	GTNAC	3 cut(s)	272, 783, 1222
MalI	GATC	3 cut(s)	144, 324, 384
MbiI	CCGCTC	1 cut(s)	214
MboI	GATC	3 cut(s)	142, 322, 382
MhlI	GDGCHC	1 cut(s)	28
MluCI	AATT	8 cut(s)	168, 355, 635, 676, 930, 1019, 1201, 1434
MlyI	GAGTC	6 cut(s)	188, 284, 628, 839, 1136, 1351
MroI	TCCGGA	1 cut(s)	1145
MroXI	GAANNNNTTC	1 cut(s)	1131
MseI	TTAA	4 cut(s)	138, 474, 650, 756
MslI	CAYNNNNRTG	1 cut(s)	1218
MspA1I	CMGCKG	3 cut(s)	35, 1055, 1262
MspI	CCGG	2 cut(s)	100, 1146
MspR9I	CCNGG	1 cut(s)	1158
Mva1269I	GAATGC	2 cut(s)	604, 1213
MvaI	CCWGG	1 cut(s)	1158
MwoI	GCNNNNNNNGC	7 cut(s)	32, 41, 311, 506, 923, 932, 1052
NdeII	GATC	3 cut(s)	142, 322, 382
NlaIII	CATG	7 cut(s)	190, 391, 526, 649, 850, 871, 1364
NlaIV	GGNNCC	1 cut(s)	1185
NmuCI	GTSAC	1 cut(s)	272
NspI	RCATGY	1 cut(s)	649
PasI	CCCWGGG	1 cut(s)	1157
PciI	ACATGT	1 cut(s)	645
PctI	GAATGC	2 cut(s)	604, 1213
PdmI	GAANNNNTTC	1 cut(s)	1131
PfeI	GAWTC	5 cut(s)	236, 458, 812, 884, 1244
PflFI	GACNNNGTC	1 cut(s)	868
PflMI	CCANNNNNTGG	1 cut(s)	434
PkrI	GCNGC	6 cut(s)	34, 160, 216, 631, 742, 1054
PleI	GAGTC	6 cut(s)	187, 284, 627, 838, 1136, 1351
PpsI	GAGTC	6 cut(s)	187, 284, 627, 838, 1136, 1351
PscI	ACATGT	1 cut(s)	645
PshAI	GACNNNNGTC	1 cut(s)	1361
Psp6I	CCWGG	1 cut(s)	1156
PspGI	CCWGG	1 cut(s)	1156
PspN4I	GGNNCC	1 cut(s)	1185
PspPI	GGNCC	2 cut(s)	864, 1277
PstI	CTGCAG	1 cut(s)	928
PsyI	GACNNNGTC	1 cut(s)	868
PvuII	CAGCTG	3 cut(s)	35, 1055, 1262
RseI	CAYNNNNRTG	1 cut(s)	1218
SalI	GTCGAC	1 cut(s)	1354
SaqAI	TTAA	4 cut(s)	138, 474, 650, 756
SatI	GCNGC	6 cut(s)	33, 159, 215, 630, 741, 1053
Sau3AI	GATC	3 cut(s)	142, 322, 382
Sau96I	GGNCC	2 cut(s)	864, 1277
SchI	GAGTC	6 cut(s)	188, 284, 628, 839, 1136, 1351
ScrFI	CCNGG	1 cut(s)	1158
SduI	GDGCHC	1 cut(s)	28
SfcI	CTRYAG	2 cut(s)	924, 1047
SinI	GGWCC	2 cut(s)	864, 1277
SmiMI	CAYNNNNRTG	1 cut(s)	1218
SmlI	CTYRAG	5 cut(s)	19, 27, 401, 502, 545
SmoI	CTYRAG	5 cut(s)	19, 27, 401, 502, 545
SpeI	ACTAGT	1 cut(s)	446
Sse9I	AATT	8 cut(s)	168, 355, 635, 676, 930, 1019, 1201, 1434
SsiI	CCGC	2 cut(s)	214, 935
SspMI	CTAG	6 cut(s)	447, 1043, 1094, 1115, 1124, 1430
StyD4I	CCNGG	1 cut(s)	1156
TaaI	ACNGT	2 cut(s)	206, 1348
TaiI	ACGT	1 cut(s)	499
TaqI	TCGA	3 cut(s)	666, 1010, 1355
TasI	AATT	8 cut(s)	168, 355, 635, 676, 930, 1019, 1201, 1434
TauI	GCSGC	1 cut(s)	217
TfiI	GAWTC	5 cut(s)	236, 458, 812, 884, 1244
Tru1I	TTAA	4 cut(s)	138, 474, 650, 756
Tru9I	TTAA	4 cut(s)	138, 474, 650, 756
TscAI	CASTG	4 cut(s)	160, 211, 1171, 1351
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	5 cut(s)	32, 158, 629, 740, 1052
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	4 cut(s)	504, 785, 1212, 1314
TspRI	CASTG	4 cut(s)	160, 211, 1171, 1351
Tth111I	GACNNNGTC	1 cut(s)	868
Van91I	CCANNNNNTGG	1 cut(s)	434
VpaK11BI	GGWCC	2 cut(s)	864, 1277
XapI	RAATTY	3 cut(s)	355, 676, 1434
XceI	RCATGY	1 cut(s)	649
XmiI	GTMKAC	1 cut(s)	1355
XmnI	GAANNNNTTC	1 cut(s)	1131
XspI	CTAG	6 cut(s)	447, 1043, 1094, 1115, 1124, 1430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.