Rorug06G0254500

Filament-like plant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001130
Physical Location & Seq
Forward (+)
40084253 .. 40091335
7083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0254500.1

Sequence Viewer

Length: 837 bp
ATGATATGTCTAATGGTTTCTCAATCTGGTTTAACTATGGCCACCATTTTCTTCTACACCTGCTTTTGGATCCCATTTATGCAGTTCAAAAAAGCTCTAGCTGGAATAATCAGTGATGTTCTGTTTCTCACTGATATCTACAAGCCAGAGGATCATAATACTTGCTGCAATGTAAACCAGTTGAGTCTTCCTGTGGCTAGGTACCAGGATTTGCAGGCTCATTGTAGTACCGAAAAGAGTGGACACACTGCCGAAACCTGCTCAGTGTGCTTGGTGGAGTTTGAGGATGAAGATGTGATTCAGTTTGTGCTTCTGATAAGTAGGCAAGGAAAAGTGAGGTTGACTAAATGGTACTCGCCATATACCCAAAAGGAAAGAACAAAGGTGCTTCGCGAGCTCAGTGGGGTGATCCTTGCGCGAGGTCCCAAGCTCTGCAATTTTGTGGAGTGGAGAGAATACAAAGTTGTTTATAAGAGATATGCTAGTCTGTATTTCTGTATGTGTATCGATCAAGATGATAATGAACTAGAGGTCCTTGAGATTATTCATCATTTTGTGGAAATTCTAGACCGATACTTTGGCAGTGTATGTGAATTGGATTTGATCTTTAACTTCCACAAGGTATGTATATTCTGCTTGTTTCAGGATCAACATTTTTGTTTCTTGAAATTATTTTTCAACGATAAGTTGTCTTGTTTACGAGTTTCTATTCAATGCTTTAGAAGGGAATGTTTTGAATGCATTTTCGTATTACTTTTGTATGAAAGCAAGCCAAATTTTGGCCTAAACGCTTGTTTTCTACTGTTAAACATGGAAGGCCTACTATATACTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FPP

Protein Analysis

278

Amino Acids

32.64

Weight (kDa)

5.83

Isoelectric Point (pI)

33.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 100 - 209 1.7e-44 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 471
AarI CACCTGC 1 cut(s) 68
Acc36I ACCTGC 2 cut(s) 68, 266
Acc65I GGTACC 1 cut(s) 201
AccB1I GGYRCC 1 cut(s) 201
AccB7I CCANNNNNTGG 1 cut(s) 779
AccII CGCG 2 cut(s) 393, 418
AclWI GGATC 5 cut(s) 64, 77, 159, 403, 654
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 2 cut(s) 561, 775
AfaI GTAC 3 cut(s) 203, 229, 353
AfiI CCNNNNNNNGG 2 cut(s) 66, 779
AgsI TTSAA 5 cut(s) 88, 667, 679, 713, 737
AjnI CCWGG 1 cut(s) 204
AloI GAACNNNNNNTCC 2 cut(s) 516, 548
AluBI AGCT 4 cut(s) 95, 101, 397, 430
AluI AGCT 4 cut(s) 95, 101, 397, 430
Alw21I GWGCWC 1 cut(s) 399
AlwI GGATC 5 cut(s) 64, 77, 159, 403, 654
AoxI GGCC 3 cut(s) 39, 781, 817
ApeKI GCWGC 1 cut(s) 165
ApoI RAATTY 2 cut(s) 561, 775
ArsI GACNNNNNNTTYG 2 cut(s) 560, 592
Asp718I GGTACC 1 cut(s) 201
AspLEI GCGC 1 cut(s) 418
AspS9I GGNCC 2 cut(s) 422, 532
AsuHPI GGTGA 1 cut(s) 418
AvaII GGWCC 2 cut(s) 422, 532
BalI TGGCCA 1 cut(s) 41
BamHI GGATCC 1 cut(s) 69
BanI GGYRCC 1 cut(s) 201
BanII GRGCYC 1 cut(s) 399
BbsI GAAGAC 1 cut(s) 179
Bbv12I GWGCWC 1 cut(s) 399
BbvI GCAGC 1 cut(s) 152
BciT130I CCWGG 1 cut(s) 206
BfaI CTAG 5 cut(s) 98, 198, 483, 527, 566
BfuAI ACCTGC 2 cut(s) 68, 266
BisI GCNGC 1 cut(s) 166
BlsI GCNGC 1 cut(s) 167
Bme1390I CCNGG 1 cut(s) 206
Bme18I GGWCC 2 cut(s) 422, 532
BmgT120I GGNCC 2 cut(s) 422, 532
BmiI GGNNCC 3 cut(s) 71, 203, 424
BmrFI CCNGG 1 cut(s) 206
BpiI GAAGAC 1 cut(s) 179
BpuEI CTTGAG 1 cut(s) 557
Bsa29I ATCGAT 1 cut(s) 507
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 779
Bse1I ACTGG 2 cut(s) 178, 835
Bse3DI GCAATG 1 cut(s) 175
BseBI CCWGG 1 cut(s) 206
BseCI ATCGAT 1 cut(s) 507
BseGI GGATG 1 cut(s) 292
BseLI CCNNNNNNNGG 2 cut(s) 66, 779
BseMI GCAATG 1 cut(s) 175
BseMII CTCAG 2 cut(s) 276, 412
BseNI ACTGG 2 cut(s) 178, 835
BseXI GCAGC 1 cut(s) 152
Bsh1236I CGCG 2 cut(s) 393, 418
BshFI GGCC 3 cut(s) 41, 783, 819
BshNI GGYRCC 1 cut(s) 201
BshVI ATCGAT 1 cut(s) 507
BsiHKAI GWGCWC 1 cut(s) 399
BslFI GGGAC 1 cut(s) 408
BslI CCNNNNNNNGG 2 cut(s) 66, 779
BsmFI GGGAC 1 cut(s) 408
BsmI GAATGC 1 cut(s) 743
BsnI GGCC 3 cut(s) 41, 783, 819
Bsp1286I GDGCHC 1 cut(s) 399
Bsp143I GATC 6 cut(s) 69, 151, 408, 508, 603, 646
Bsp68I TCGCGA 1 cut(s) 393
BspANI GGCC 3 cut(s) 41, 783, 819
BspCNI CTCAG 2 cut(s) 275, 411
BspDI ATCGAT 1 cut(s) 507
BspFNI CGCG 2 cut(s) 393, 418
BspLI GGNNCC 3 cut(s) 71, 203, 424
BspMI ACCTGC 2 cut(s) 68, 266
BspPI GGATC 5 cut(s) 64, 77, 159, 403, 654
BspT107I GGYRCC 1 cut(s) 201
BsrDI GCAATG 1 cut(s) 175
BsrI ACTGG 2 cut(s) 178, 835
BssMI GATC 6 cut(s) 69, 151, 408, 508, 603, 646
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 1 cut(s) 804
BstC8I GCNNGC 3 cut(s) 216, 395, 770
BstDEI CTNAG 2 cut(s) 262, 398
BstF5I GGATG 1 cut(s) 292
BstFNI CGCG 2 cut(s) 393, 418
BstHHI GCGC 1 cut(s) 418
BstKTI GATC 6 cut(s) 72, 154, 411, 511, 606, 649
BstMBI GATC 6 cut(s) 69, 151, 408, 508, 603, 646
BstMWI GCNNNNNNNGC 2 cut(s) 267, 394
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 204
BstUI CGCG 2 cut(s) 393, 418
BstV1I GCAGC 1 cut(s) 152
BstV2I GAAGAC 1 cut(s) 179
BstX2I RGATCY 1 cut(s) 69
BstYI RGATCY 1 cut(s) 69
Bsu15I ATCGAT 1 cut(s) 507
BsuRI GGCC 3 cut(s) 41, 783, 819
BsuTUI ATCGAT 1 cut(s) 507
BtsCI GGATG 1 cut(s) 292
BtsI GCAGTG 2 cut(s) 246, 589
BtsIMutI CAGTG 6 cut(s) 118, 129, 246, 270, 406, 589
BtuMI TCGCGA 1 cut(s) 393
BveI ACCTGC 2 cut(s) 68, 266
Cac8I GCNNGC 3 cut(s) 216, 395, 770
CfoI GCGC 1 cut(s) 418
Cfr13I GGNCC 2 cut(s) 422, 532
ClaI ATCGAT 1 cut(s) 507
Csp6I GTAC 3 cut(s) 202, 228, 352
CviAII CATG 1 cut(s) 811
CviQI GTAC 3 cut(s) 202, 228, 352
DdeI CTNAG 2 cut(s) 262, 398
DpnI GATC 6 cut(s) 71, 153, 410, 510, 605, 648
DpnII GATC 6 cut(s) 69, 151, 408, 508, 603, 646
EaeI YGGCCR 1 cut(s) 39
Ecl136II GAGCTC 1 cut(s) 397
Eco147I AGGCCT 1 cut(s) 819
Eco24I GRGCYC 1 cut(s) 399
Eco32I GATATC 1 cut(s) 136
Eco47I GGWCC 2 cut(s) 422, 532
Eco53kI GAGCTC 1 cut(s) 397
EcoICRI GAGCTC 1 cut(s) 397
EcoO109I RGGNCCY 2 cut(s) 422, 532
EcoRII CCWGG 1 cut(s) 204
EcoRV GATATC 1 cut(s) 136
EcoT22I ATGCAT 1 cut(s) 743
EcoT38I GRGCYC 1 cut(s) 399
FaeI CATG 1 cut(s) 814
FaqI GGGAC 1 cut(s) 408
FatI CATG 1 cut(s) 810
Fnu4HI GCNGC 1 cut(s) 166
FokI GGATG 1 cut(s) 299
FriOI GRGCYC 1 cut(s) 399
Fsp4HI GCNGC 1 cut(s) 166
FspBI CTAG 5 cut(s) 98, 198, 483, 527, 566
GlaI GCGC 1 cut(s) 417
GluI GCNGC 1 cut(s) 166
HaeIII GGCC 3 cut(s) 41, 783, 819
HhaI GCGC 1 cut(s) 418
Hin1II CATG 1 cut(s) 814
Hin6I GCGC 1 cut(s) 416
HinP1I GCGC 1 cut(s) 416
HincII GTYRAC 1 cut(s) 342
HindII GTYRAC 1 cut(s) 342
HinfI GANTC 2 cut(s) 184, 298
HphI GGTGA 1 cut(s) 418
Hpy166II GTNNAC 4 cut(s) 175, 242, 342, 698
Hpy188I TCNGA 1 cut(s) 315
Hpy188III TCNNGA 5 cut(s) 392, 512, 566, 644, 664
Hpy8I GTNNAC 4 cut(s) 175, 242, 342, 698
HpyAV CCTTC 2 cut(s) 717, 809
HpyCH4III ACNGT 1 cut(s) 804
HpyCH4V TGCA 5 cut(s) 82, 168, 214, 435, 741
HpyF10VI GCNNNNNNNGC 2 cut(s) 267, 394
HpyF3I CTNAG 2 cut(s) 262, 398
Hsp92II CATG 1 cut(s) 814
HspAI GCGC 1 cut(s) 416
KpnI GGTACC 1 cut(s) 205
Kzo9I GATC 6 cut(s) 69, 151, 408, 508, 603, 646
Lsp1109I GCAGC 1 cut(s) 152
MaeI CTAG 5 cut(s) 98, 198, 483, 527, 566
MalI GATC 6 cut(s) 71, 153, 410, 510, 605, 648
MboI GATC 6 cut(s) 69, 151, 408, 508, 603, 646
MboII GAAGA 3 cut(s) 43, 179, 302
MflI RGATCY 1 cut(s) 69
MhlI GDGCHC 1 cut(s) 399
MlsI TGGCCA 1 cut(s) 41
MluCI AATT 5 cut(s) 436, 561, 593, 668, 775
MluNI TGGCCA 1 cut(s) 41
MlyI GAGTC 1 cut(s) 193
MnlI CCTC 5 cut(s) 142, 277, 330, 413, 523
Mox20I TGGCCA 1 cut(s) 41
Mph1103I ATGCAT 1 cut(s) 743
MscI TGGCCA 1 cut(s) 41
MseI TTAA 3 cut(s) 32, 609, 806
Msp20I TGGCCA 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 206
Mva1269I GAATGC 1 cut(s) 743
MvaI CCWGG 1 cut(s) 206
MvnI CGCG 2 cut(s) 393, 418
MwoI GCNNNNNNNGC 2 cut(s) 267, 394
NdeII GATC 6 cut(s) 69, 151, 408, 508, 603, 646
NlaIII CATG 1 cut(s) 814
NlaIV GGNNCC 3 cut(s) 71, 203, 424
NruI TCGCGA 1 cut(s) 393
NsiI ATGCAT 1 cut(s) 743
PaqCI CACCTGC 1 cut(s) 68
PceI AGGCCT 1 cut(s) 819
PctI GAATGC 1 cut(s) 743
PfeI GAWTC 1 cut(s) 298
PflMI CCANNNNNTGG 1 cut(s) 779
PkrI GCNGC 1 cut(s) 167
PleI GAGTC 1 cut(s) 192
PpsI GAGTC 1 cut(s) 192
PpuMI RGGWCCY 2 cut(s) 422, 532
PsiI TTATAA 1 cut(s) 471
Psp124BI GAGCTC 1 cut(s) 399
Psp5II RGGWCCY 2 cut(s) 422, 532
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 3 cut(s) 71, 203, 424
PspPI GGNCC 2 cut(s) 422, 532
PspPPI RGGWCCY 2 cut(s) 422, 532
PsuI RGATCY 1 cut(s) 69
RruI TCGCGA 1 cut(s) 393
RsaI GTAC 3 cut(s) 203, 229, 353
RsaNI GTAC 3 cut(s) 202, 228, 352
SacI GAGCTC 1 cut(s) 399
SaqAI TTAA 3 cut(s) 32, 609, 806
SatI GCNGC 1 cut(s) 166
Sau3AI GATC 6 cut(s) 69, 151, 408, 508, 603, 646
Sau96I GGNCC 2 cut(s) 422, 532
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 1 cut(s) 206
SduI GDGCHC 1 cut(s) 399
SinI GGWCC 2 cut(s) 422, 532
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
Sse9I AATT 5 cut(s) 436, 561, 593, 668, 775
SseBI AGGCCT 1 cut(s) 819
SspMI CTAG 5 cut(s) 98, 198, 483, 527, 566
SstI GAGCTC 1 cut(s) 399
StuI AGGCCT 1 cut(s) 819
StyD4I CCNGG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 804
TaqI TCGA 1 cut(s) 507
TaqII GACCGA 1 cut(s) 585
TasI AATT 5 cut(s) 436, 561, 593, 668, 775
TfiI GAWTC 1 cut(s) 298
Tru1I TTAA 3 cut(s) 32, 609, 806
Tru9I TTAA 3 cut(s) 32, 609, 806
TscAI CASTG 6 cut(s) 118, 136, 253, 270, 406, 589
TseI GCWGC 1 cut(s) 165
TspDTI ATGAA 4 cut(s) 303, 536, 537, 777
TspRI CASTG 6 cut(s) 118, 136, 253, 270, 406, 589
Van91I CCANNNNNTGG 1 cut(s) 779
VpaK11BI GGWCC 2 cut(s) 422, 532
XapI RAATTY 2 cut(s) 561, 775
XbaI TCTAGA 1 cut(s) 565
XspI CTAG 5 cut(s) 98, 198, 483, 527, 566
Zsp2I ATGCAT 1 cut(s) 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.