pycom08g15480

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0011007
Physical Location & Seq
Forward (+)
15221506 .. 15222720
1215 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1215 bp
ATGCAATCTTCAAGTGGTGGTGAAGCTCAAGACCATGAAATCTCTAGACCCGATTCGATCCCGGTTTACTTGAATTCTCCGACCGGCCACTTATTTGCTTCCTCCGACCCAACAGTACACCCATCTCTCCTTTCTCAATACCAAAACCACCCACCCACTACCACAACACTTTTTGATCATCATCTCTCATCTAGTAGTTACACTTATGATCATTTCCACACAACATTGTCTCATCCCCAACCAAACTCATCAAACCCAAATTTCATCCCCAGCCCAAGATCCAATCAACCCAACTCCACCAACCCCATTCCCAACCCACAACCTTCATCAACTACTACCGAAGCACGAGGAGGACAGACCAACACCGTTGCCACCCGAAACACGAAGAAGAGGACAAGAGCTTCTAGAAGGGCACCAACCACCGTTCTCACCACCGACACGTCTAATTTTCGGGCAATGGTGCAGGAGTTCACTGGTATCCCAGCACCCCCATTTTCAGCTTCATCCTCATCACCATACGCTCGAAGACTCGAAATGTTTGGCTCCGGAATAAGGTCACCTCTCTACCCTTTACGTCCTTCGGCTCAAAAGGTCCATCAGCCAGCCCCATTTCTCTCTCCTTCTTCTAATTCTAATTCTTCATTGTTGATGATGATGAGCAATAGTATTAGTACTATGGTTGATGCTACTAATATTGCTACTACTAGTAATAATAGCAATGTTAATTTCAGTTCAACTAATTACCAATTACTATCTGATCATCATCAAAATCAAGGCCTCTTCCAAAGCATGCAAAACCCTATTCTCACATTCCAATCCCTACCACAGCAGCCTCCTCCATTCCATTCTTCAATCAATGTGCCTAATTTTGGGTCAAGACCTACCCCCCGGGGAGTAATTGATAATTTGGCCATGCATTCATCACTTGAGGACCAATTGGGTCCGAACCGTCATGGATCATCACCATATGTTAACACAAACCAGCTCGGTGGTGATGGTGTTGGATCAATAGACGACAGCCATGTAGCAGCTTCAGATGGGAATGGCGGCTGGAGGGATCATGGAGTACTTGGATCAAGGGATGGGGGATTATCATCACATGATCACCATTTGAGGCCTAGTTTGGACAAGTGTTTGGAGATGGGCAATGTTAATTCTACTACTAGAGGTGAAGGTGCGGTGGACTCGTGGATTTCTCCTAATTCAGATCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

405

Amino Acids

43.59

Weight (kDa)

6.59

Isoelectric Point (pI)

55.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 137 - 164 2.4e-12 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011007)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35830 AT4G39720 AT4G39720 AT4G39720 AT4G39720
fragaria_vesca FvH4_5g37690
malus_domestica MD08G1181100.v1.1 MD15G1366700.v1.1
prunus_persica Prupe.1G514600_v2.0.a1
pyrus_communis pycom08g15480
rosa_chinensis RchiOBHm_Chr7g0239391
rosa_laevigata RLG00000000760
rosa_multiflora Rmu_sc0008456.1_g000009
rosa_roxburghii Rroxscaffold_3G00220970
rosa_rugosa Rorug07G0327800
rosa_samantha Rh7AG481000 Rh7BG453700 Rh7CG499000 Rh7DG467100
rosa_wichuraiana Rw7G040310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 412
AccIII TCCGGA 1 cut(s) 545
AciI CCGC 2 cut(s) 1047, 1178
AclWI GGATC 6 cut(s) 52, 273, 964, 1012, 1065, 1081
AcoI YGGCCR 2 cut(s) 85, 909
AcsI RAATTY 2 cut(s) 73, 259
AcuI CTGAAG 1 cut(s) 1017
AfaI GTAC 3 cut(s) 117, 673, 1068
AfiI CCNNNNNNNGG 2 cut(s) 552, 869
AflIII ACRYGT 1 cut(s) 438
AgsI TTSAA 4 cut(s) 12, 73, 735, 852
AhlI ACTAGT 1 cut(s) 704
AjiI CACGTC 1 cut(s) 441
AluBI AGCT 5 cut(s) 26, 401, 500, 985, 1031
AluI AGCT 5 cut(s) 26, 401, 500, 985, 1031
Alw26I GTCTC 1 cut(s) 234
AlwI GGATC 6 cut(s) 52, 273, 964, 1012, 1065, 1081
Ama87I CYCGRG 1 cut(s) 888
Aor13HI TCCGGA 1 cut(s) 545
AoxI GGCC 4 cut(s) 85, 775, 909, 1115
ApeKI GCWGC 2 cut(s) 829, 1028
ApoI RAATTY 2 cut(s) 73, 259
AspS9I GGNCC 3 cut(s) 592, 931, 941
AsuC2I CCSGG 3 cut(s) 62, 889, 890
AsuHPI GGTGA 8 cut(s) 32, 421, 504, 549, 954, 1004, 1097, 1181
AvaI CYCGRG 1 cut(s) 888
AvaII GGWCC 3 cut(s) 592, 931, 941
BaeGI GKGCMC 1 cut(s) 415
BalI TGGCCA 1 cut(s) 911
BanI GGYRCC 1 cut(s) 412
BauI CACGAG 2 cut(s) 345, 1186
BbsI GAAGAC 1 cut(s) 532
BbvI GCAGC 2 cut(s) 841, 1040
BccI CCATC 6 cut(s) 130, 603, 989, 1031, 1076, 1135
BciVI GTATCC 1 cut(s) 488
BclI TGATCA 4 cut(s) 175, 208, 757, 1102
BcnI CCSGG 3 cut(s) 62, 889, 890
BcoDI GTCTC 1 cut(s) 234
BcuI ACTAGT 1 cut(s) 704
BfaI CTAG 7 cut(s) 45, 192, 405, 705, 1119, 1164, 1213
BfuI GTATCC 1 cut(s) 488
BisI GCNGC 3 cut(s) 830, 1029, 1048
BlsI GCNGC 3 cut(s) 831, 1030, 1049
BmcAI AGTACT 2 cut(s) 673, 1068
Bme1390I CCNGG 3 cut(s) 62, 889, 890
Bme18I GGWCC 3 cut(s) 592, 931, 941
BmeT110I CYCGRG 1 cut(s) 888
BmgBI CACGTC 1 cut(s) 441
BmgT120I GGNCC 3 cut(s) 592, 931, 941
BmiI GGNNCC 3 cut(s) 414, 544, 942
BmrFI CCNGG 3 cut(s) 62, 889, 890
BmsI GCATC 1 cut(s) 673
BpiI GAAGAC 1 cut(s) 532
BpmI CTGGAG 1 cut(s) 1072
BpuEI CTTGAG 2 cut(s) 12, 947
BpuMI CCSGG 3 cut(s) 62, 889, 890
BsaBI GATNNNNATC 3 cut(s) 180, 762, 1093
BsaJI CCNNGG 3 cut(s) 887, 888, 889
BsaWI WCCGGW 1 cut(s) 545
Bsc4I CCNNNNNNNGG 2 cut(s) 552, 869
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 478
Bse3DI GCAATG 3 cut(s) 462, 724, 1153
Bse8I GATNNNNATC 3 cut(s) 180, 762, 1093
BseAI TCCGGA 1 cut(s) 545
BseDI CCNNGG 3 cut(s) 887, 888, 889
BseGI GGATG 4 cut(s) 232, 264, 503, 1087
BseJI GATNNNNATC 3 cut(s) 180, 762, 1093
BseLI CCNNNNNNNGG 2 cut(s) 552, 869
BseMI GCAATG 3 cut(s) 462, 724, 1153
BseNI ACTGG 1 cut(s) 478
BseRI GAGGAG 2 cut(s) 363, 825
BseSI GKGCMC 1 cut(s) 415
BseXI GCAGC 2 cut(s) 841, 1040
BseYI CCCAGC 2 cut(s) 269, 481
BsgI GTGCAG 1 cut(s) 482
Bsh1285I CGRYCG 1 cut(s) 84
BshFI GGCC 4 cut(s) 87, 777, 911, 1117
BshNI GGYRCC 1 cut(s) 412
BsiEI CGRYCG 1 cut(s) 84
BsiHKCI CYCGRG 1 cut(s) 888
BsiSI CCGG 4 cut(s) 62, 84, 546, 889
BslI CCNNNNNNNGG 2 cut(s) 552, 869
BsmAI GTCTC 1 cut(s) 234
BsmI GAATGC 1 cut(s) 916
BsnI GGCC 4 cut(s) 87, 777, 911, 1117
BsoBI CYCGRG 1 cut(s) 888
Bsp1286I GDGCHC 1 cut(s) 415
Bsp13I TCCGGA 1 cut(s) 545
BspACI CCGC 2 cut(s) 1047, 1178
BspANI GGCC 4 cut(s) 87, 777, 911, 1117
BspEI TCCGGA 1 cut(s) 545
BspLI GGNNCC 3 cut(s) 414, 544, 942
BspPI GGATC 6 cut(s) 52, 273, 964, 1012, 1065, 1081
BspT107I GGYRCC 1 cut(s) 412
BsrDI GCAATG 3 cut(s) 462, 724, 1153
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 1 cut(s) 478
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 3 cut(s) 887, 888, 889
BssSI CACGAG 2 cut(s) 345, 1186
Bst2BI CACGAG 2 cut(s) 345, 1186
Bst4CI ACNGT 4 cut(s) 115, 367, 424, 950
Bst6I CTCTTC 2 cut(s) 383, 785
BstC8I GCNNGC 2 cut(s) 603, 791
BstEII GGTNACC 1 cut(s) 555
BstF5I GGATG 4 cut(s) 232, 264, 503, 1087
BstMAI GTCTC 1 cut(s) 234
BstMCI CGRYCG 1 cut(s) 84
BstNSI RCATGY 1 cut(s) 793
BstPI GGTNACC 1 cut(s) 555
BstSCI CCNGG 3 cut(s) 60, 887, 888
BstSLI GKGCMC 1 cut(s) 415
BstV1I GCAGC 2 cut(s) 841, 1040
BstV2I GAAGAC 1 cut(s) 532
BstX2I RGATCY 1 cut(s) 278
BstXI CCANNNNNNTGG 1 cut(s) 989
BstYI RGATCY 1 cut(s) 278
BsuI GTATCC 1 cut(s) 488
BsuRI GGCC 4 cut(s) 87, 777, 911, 1117
BtrI CACGTC 1 cut(s) 441
BtsCI GGATG 4 cut(s) 232, 264, 503, 1087
BtsIMutI CAGTG 1 cut(s) 471
Cac8I GCNNGC 2 cut(s) 603, 791
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 3 cut(s) 592, 931, 941
Cfr9I CCCGGG 1 cut(s) 888
Csp6I GTAC 3 cut(s) 116, 672, 1067
CviAII CATG 7 cut(s) 35, 790, 913, 953, 1022, 1061, 1100
CviQI GTAC 3 cut(s) 116, 672, 1067
EaeI YGGCCR 2 cut(s) 85, 909
Eam1104I CTCTTC 2 cut(s) 383, 785
EarI CTCTTC 2 cut(s) 383, 785
Eco147I AGGCCT 2 cut(s) 777, 1117
Eco47I GGWCC 3 cut(s) 592, 931, 941
Eco57I CTGAAG 1 cut(s) 1017
Eco88I CYCGRG 1 cut(s) 888
Eco91I GGTNACC 1 cut(s) 555
EcoO65I GGTNACC 1 cut(s) 555
EcoRI GAATTC 1 cut(s) 73
EcoT22I ATGCAT 1 cut(s) 918
FaeI CATG 7 cut(s) 38, 793, 916, 956, 1025, 1064, 1103
FatI CATG 7 cut(s) 34, 789, 912, 952, 1021, 1060, 1099
FauNDI CATATG 1 cut(s) 967
FbaI TGATCA 4 cut(s) 175, 208, 757, 1102
Fnu4HI GCNGC 3 cut(s) 830, 1029, 1048
FokI GGATG 4 cut(s) 219, 251, 490, 1094
Fsp4HI GCNGC 3 cut(s) 830, 1029, 1048
FspBI CTAG 7 cut(s) 45, 192, 405, 705, 1119, 1164, 1213
GluI GCNGC 3 cut(s) 830, 1029, 1048
GsaI CCCAGC 2 cut(s) 273, 485
GsuI CTGGAG 1 cut(s) 1072
HaeIII GGCC 4 cut(s) 87, 777, 911, 1117
HapII CCGG 4 cut(s) 62, 84, 546, 889
Hin1II CATG 7 cut(s) 38, 793, 916, 956, 1025, 1064, 1103
HincII GTYRAC 1 cut(s) 973
HindII GTYRAC 1 cut(s) 973
HinfI GANTC 3 cut(s) 53, 528, 1184
HpaI GTTAAC 1 cut(s) 973
HpaII CCGG 4 cut(s) 62, 84, 546, 889
HphI GGTGA 8 cut(s) 32, 421, 504, 549, 954, 1004, 1097, 1181
Hpy166II GTNNAC 5 cut(s) 67, 118, 471, 973, 1183
Hpy188I TCNGA 6 cut(s) 81, 106, 757, 945, 1036, 1207
Hpy188III TCNNGA 5 cut(s) 29, 45, 405, 546, 876
Hpy8I GTNNAC 5 cut(s) 67, 118, 471, 973, 1183
HpyAV CCTTC 5 cut(s) 333, 402, 588, 630, 1166
HpyCH4III ACNGT 4 cut(s) 115, 367, 424, 950
HpyCH4IV ACGT 2 cut(s) 440, 574
HpyCH4V TGCA 4 cut(s) 4, 463, 793, 916
HpySE526I ACGT 2 cut(s) 440, 574
Hsp92II CATG 7 cut(s) 38, 793, 916, 956, 1025, 1064, 1103
Kpn2I TCCGGA 1 cut(s) 545
Ksp22I TGATCA 4 cut(s) 175, 208, 757, 1102
KspAI GTTAAC 1 cut(s) 973
LmnI GCTCC 1 cut(s) 548
Lsp1109I GCAGC 2 cut(s) 841, 1040
LweI GCATC 1 cut(s) 673
MaeI CTAG 7 cut(s) 45, 192, 405, 705, 1119, 1164, 1213
MaeII ACGT 2 cut(s) 440, 574
MaeIII GTNAC 2 cut(s) 197, 555
MboII GAAGA 7 cut(s) 397, 400, 537, 615, 630, 772, 840
MfeI CAATTG 1 cut(s) 935
MflI RGATCY 1 cut(s) 278
MhlI GDGCHC 1 cut(s) 415
MlsI TGGCCA 1 cut(s) 911
MluNI TGGCCA 1 cut(s) 911
MlyI GAGTC 2 cut(s) 522, 1178
MmeI TCCRAC 3 cut(s) 104, 129, 982
Mox20I TGGCCA 1 cut(s) 911
Mph1103I ATGCAT 1 cut(s) 918
MroI TCCGGA 1 cut(s) 545
MscI TGGCCA 1 cut(s) 911
MseI TTAA 3 cut(s) 723, 972, 1152
Msp20I TGGCCA 1 cut(s) 911
MspI CCGG 4 cut(s) 62, 84, 546, 889
MspR9I CCNGG 3 cut(s) 62, 889, 890
MunI CAATTG 1 cut(s) 935
Mva1269I GAATGC 1 cut(s) 916
NciI CCSGG 3 cut(s) 62, 889, 890
NdeI CATATG 1 cut(s) 967
NlaIII CATG 7 cut(s) 38, 793, 916, 956, 1025, 1064, 1103
NlaIV GGNNCC 3 cut(s) 414, 544, 942
NmuCI GTSAC 1 cut(s) 555
NsiI ATGCAT 1 cut(s) 918
NspI RCATGY 1 cut(s) 793
PaeI GCATGC 1 cut(s) 793
PceI AGGCCT 2 cut(s) 777, 1117
PctI GAATGC 1 cut(s) 916
PfeI GAWTC 1 cut(s) 53
PkrI GCNGC 3 cut(s) 831, 1030, 1049
PleI GAGTC 2 cut(s) 522, 1178
PpsI GAGTC 2 cut(s) 522, 1178
PspEI GGTNACC 1 cut(s) 555
PspFI CCCAGC 2 cut(s) 269, 481
PspN4I GGNNCC 3 cut(s) 414, 544, 942
PspPI GGNCC 3 cut(s) 592, 931, 941
PsuI RGATCY 1 cut(s) 278
RsaI GTAC 3 cut(s) 117, 673, 1068
RsaNI GTAC 3 cut(s) 116, 672, 1067
SaqAI TTAA 3 cut(s) 723, 972, 1152
SatI GCNGC 3 cut(s) 830, 1029, 1048
Sau96I GGNCC 3 cut(s) 592, 931, 941
ScaI AGTACT 2 cut(s) 673, 1068
SchI GAGTC 2 cut(s) 522, 1178
ScrFI CCNGG 3 cut(s) 62, 889, 890
SduI GDGCHC 1 cut(s) 415
SfaNI GCATC 1 cut(s) 673
SinI GGWCC 3 cut(s) 592, 931, 941
SmaI CCCGGG 1 cut(s) 890
SmlI CTYRAG 2 cut(s) 27, 926
SmoI CTYRAG 2 cut(s) 27, 926
SpeI ACTAGT 1 cut(s) 704
SphI GCATGC 1 cut(s) 793
SseBI AGGCCT 2 cut(s) 777, 1117
SsiI CCGC 2 cut(s) 1047, 1178
SspI AATATT 1 cut(s) 694
SspMI CTAG 7 cut(s) 45, 192, 405, 705, 1119, 1164, 1213
StuI AGGCCT 2 cut(s) 777, 1117
StyD4I CCNGG 3 cut(s) 60, 887, 888
TaaI ACNGT 4 cut(s) 115, 367, 424, 950
TaiI ACGT 2 cut(s) 443, 577
TaqI TCGA 3 cut(s) 56, 523, 531
TatI WGTACW 3 cut(s) 115, 671, 1066
TauI GCSGC 1 cut(s) 1050
TfiI GAWTC 1 cut(s) 53
Tru1I TTAA 3 cut(s) 723, 972, 1152
Tru9I TTAA 3 cut(s) 723, 972, 1152
TscAI CASTG 1 cut(s) 478
TseFI GTSAC 1 cut(s) 555
TseI GCWGC 2 cut(s) 829, 1028
Tsp45I GTSAC 1 cut(s) 555
TspDTI ATGAA 6 cut(s) 51, 253, 315, 492, 630, 909
TspMI CCCGGG 1 cut(s) 888
TspRI CASTG 1 cut(s) 478
VpaK11BI GGWCC 3 cut(s) 592, 931, 941
XapI RAATTY 2 cut(s) 73, 259
XbaI TCTAGA 2 cut(s) 44, 404
XceI RCATGY 1 cut(s) 793
XmaI CCCGGG 1 cut(s) 888
XspI CTAG 7 cut(s) 45, 192, 405, 705, 1119, 1164, 1213
ZrmI AGTACT 2 cut(s) 673, 1068
Zsp2I ATGCAT 1 cut(s) 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.