Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0007867

Physical Location & Seq

Genomic Coordinates Reverse (-)

15235808 .. 15239017

Gene Structure 3210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGAAGACGGTGGTCGGCAACCTTTGCTCACCGTTTCTTCTGAGTCAACTCGGTAATTCGAGGCCTTGTCTTCTAAAGCTCAGGACTTCTGCCGCTTCACCGGTTTTCAAGCGCTCTTTCGCGGCGGCAATCAAAGTTCGAGCTGCTGCTTACTCCGCCGGCGTCGGAGTCGAGGCAACCGAACCAGTTGTGGTGCAAAATGATGGCATCAGCACCAAGAACATTTTAGCTTGTCCGATATGCTACGATCCATTTTCCAGTTCCGGTGATCTGGGCTTATCTGTTGAGTCTGTTTCTGGGTCTAGTTTTCAATGTAGGACTTGTAAGAAGACTTACTTTGGCAACGAAACACATATTGACCTGACAACAGCAAGTGGCGCCAAGGACTATGGGGAATCAAAGCCCATTTCCACAGAAATGTTTAGGACTCCATTGGTATCGTACCTCTATGAGAAGGGCTGGCGTCAAAGCTTTACTGTATGGGGTGGATTTCCTGGCCCAGAGAAAGAGTTTGAGTTGATTAAGGATTTCTTAAAGCCAGTCTTGGGTGGTGGAAATCTCATTGATGCAAGTTGCGGGAGTGGAATGTTTTCTAGACTTTTCGCTAAGAGCGGATTGTTTTCTCTTGTTGTTGCTTTGGACTACTCAGAGAACATGTTGAAGGAGTGCTATGGATTCATTCAGCAGGAGGAGAACCTTCCCAAAGAGAACATGATCCTGGTCAGAGCTGATATTTCTAGGCTTCCCTTTGCTACTAGTTCTGTCGATGCAGTGCATGCTGGTGCTGCCATACACTGTTGGCCTTCACCATCATCAGCTGTTGCTGAAATTAGTCGAGTCCTGCGACCTGGCGGGGTGTTTGTTGCAACTACTTTCATATGGGACGGGCCTTTTTCACTCATCCCATTTCAAAGGAACATAGCACAGAGAACAAAGCAAATGTCGGGCAACCAACTCTTCACGTCAGAAAGTGAATTAGAAGATATCTGCCAAGCATGTGGACTGGTAGGTTTTACCAAAATGAGGAATAGGCGTTTTGTGATGATTTCTGCCACGAAACCCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

356

Amino Acids

38.58

Weight (kDa)

8.58

Isoelectric Point (pI)

51.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	174 - 335	7.1e-09	Methyltransferase domain
Ubie_methyltran	PF01209	181 - 289	8.9e-09	ubiE/COQ5 methyltransferase family
Methyltransf_31	PF13847	185 - 293	6.4e-13	Methyltransferase domain
Methyltransf_25	PF13649	188 - 285	8.4e-16	Methyltransferase domain
Methyltransf_11	PF08241	189 - 288	6.7e-21	Methyltransferase domain
Methyltransf_12	PF08242	189 - 287	5.7e-11	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78140
fragaria_vesca	FvH4_5g37670 FvH4_5g37670 FvH4_5g37670 FvH4_5g37670 FvH4_5g37670
malus_domestica	MD05G1202100.v1.1 MD08G1181500.v1.1 MD08G1181700.v1.1 MD15G1366900.v1.1
prunus_persica	Prupe.1G514900_v2.0.a1
pyrus_communis	pycom08g15490
rosa_chinensis	RchiOBHm_Chr7g0239331
rosa_laevigata	RLG00000000762
rosa_multiflora	Rmu_sc0007840.1_g000001 Rmu_sc0008456.1_g000004
rosa_roxburghii	Rroxscaffold_3G00221000
rosa_rugosa	Rorug07G0327500 Rorug07G0327500
rosa_samantha	Rh7AG480800 Rh7BG453600 Rh7CG498700 Rh7DG466800
rosa_wichuraiana	Rw7G040290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	377
AccBSI	CCGCTC	1 cut(s)	612
AccII	CGCG	1 cut(s)	122
AciI	CCGC	7 cut(s)	93, 122, 125, 156, 576, 612, 852
AclWI	GGATC	2 cut(s)	242, 709
AcyI	GRCGYC	3 cut(s)	162, 378, 463
AfaI	GTAC	1 cut(s)	443
AfeI	AGCGCT	1 cut(s)	113
AfiI	CCNNNNNNNGG	2 cut(s)	545, 1023
AflIII	ACRYGT	1 cut(s)	654
AgeI	ACCGGT	1 cut(s)	100
AgsI	TTSAA	4 cut(s)	109, 311, 661, 911
AhlI	ACTAGT	1 cut(s)	755
AjiI	CACGTC	1 cut(s)	963
AjnI	CCWGG	3 cut(s)	493, 717, 847
AluBI	AGCT	6 cut(s)	79, 143, 230, 471, 728, 818
AluI	AGCT	6 cut(s)	79, 143, 230, 471, 728, 818
AlwI	GGATC	2 cut(s)	242, 709
Aor51HI	AGCGCT	1 cut(s)	113
AoxI	GGCC	4 cut(s)	62, 496, 800, 887
ApeKI	GCWGC	3 cut(s)	143, 146, 785
ArsI	GACNNNNNNTTYG	2 cut(s)	926, 958
AsiGI	ACCGGT	1 cut(s)	100
Asp700I	GAANNNNTTC	1 cut(s)	589
AspLEI	GCGC	2 cut(s)	114, 380
AspS9I	GGNCC	2 cut(s)	497, 887
AsuHPI	GGTGA	4 cut(s)	21, 90, 278, 798
BanI	GGYRCC	1 cut(s)	377
BbsI	GAAGAC	3 cut(s)	11, 62, 335
BbvI	GCAGC	3 cut(s)	130, 133, 772
BccI	CCATC	2 cut(s)	197, 817
BciT130I	CCWGG	3 cut(s)	495, 719, 849
BcuI	ACTAGT	1 cut(s)	755
BfaI	CTAG	4 cut(s)	303, 594, 738, 756
BfoI	RGCGCY	2 cut(s)	115, 381
BisI	GCNGC	6 cut(s)	93, 123, 126, 144, 147, 786
BlsI	GCNGC	6 cut(s)	94, 124, 127, 145, 148, 787
Bme1390I	CCNGG	3 cut(s)	495, 719, 849
BmgBI	CACGTC	1 cut(s)	963
BmgT120I	GGNCC	2 cut(s)	497, 887
BmiI	GGNNCC	1 cut(s)	379
BmrFI	CCNGG	3 cut(s)	495, 719, 849
BmsI	GCATC	3 cut(s)	216, 556, 757
BoxI	GACNNNNGTC	1 cut(s)	11
BpiI	GAAGAC	3 cut(s)	11, 62, 335
Bpu10I	CCTNAGC	1 cut(s)	80
BsaHI	GRCGYC	3 cut(s)	162, 378, 463
BsaJI	CCNNGG	1 cut(s)	381
BsaWI	WCCGGW	2 cut(s)	100, 263
Bsc4I	CCNNNNNNNGG	2 cut(s)	545, 1023
Bse118I	RCCGGY	2 cut(s)	100, 158
Bse1I	ACTGG	4 cut(s)	185, 258, 539, 1008
BseBI	CCWGG	3 cut(s)	495, 719, 849
BseDI	CCNNGG	1 cut(s)	381
BseGI	GGATG	1 cut(s)	900
BseLI	CCNNNNNNNGG	2 cut(s)	545, 1023
BseMII	CTCAG	3 cut(s)	32, 94, 660
BseNI	ACTGG	4 cut(s)	185, 258, 539, 1008
BseRI	GAGGAG	1 cut(s)	704
BseXI	GCAGC	3 cut(s)	130, 133, 772
Bsh1236I	CGCG	1 cut(s)	122
BshFI	GGCC	4 cut(s)	64, 498, 802, 889
BshNI	GGYRCC	1 cut(s)	377
BshTI	ACCGGT	1 cut(s)	100
BsiSI	CCGG	3 cut(s)	101, 159, 264
BslFI	GGGAC	1 cut(s)	896
BslI	CCNNNNNNNGG	2 cut(s)	545, 1023
BsmFI	GGGAC	1 cut(s)	896
BsnI	GGCC	4 cut(s)	64, 498, 802, 889
Bsp143I	GATC	3 cut(s)	247, 268, 714
BspACI	CCGC	7 cut(s)	93, 122, 125, 156, 576, 612, 852
BspANI	GGCC	4 cut(s)	64, 498, 802, 889
BspCNI	CTCAG	3 cut(s)	33, 93, 659
BspFNI	CGCG	1 cut(s)	122
BspLI	GGNNCC	1 cut(s)	379
BspPI	GGATC	2 cut(s)	242, 709
BspT107I	GGYRCC	1 cut(s)	377
BsrBI	CCGCTC	1 cut(s)	612
BsrFI	RCCGGY	2 cut(s)	100, 158
BsrI	ACTGG	4 cut(s)	185, 258, 539, 1008
BssAI	RCCGGY	2 cut(s)	100, 158
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	3 cut(s)	247, 268, 714
BssNI	GRCGYC	3 cut(s)	162, 378, 463
BssT1I	CCWWGG	1 cut(s)	381
Bst2UI	CCWGG	3 cut(s)	495, 719, 849
Bst4CI	ACNGT	4 cut(s)	10, 33, 478, 797
Bst6I	CTCTTC	1 cut(s)	962
BstACI	GRCGYC	3 cut(s)	162, 378, 463
BstAPI	GCANNNNNTGC	2 cut(s)	24, 776
BstC8I	GCNNGC	3 cut(s)	160, 461, 777
BstDEI	CTNAG	4 cut(s)	41, 80, 606, 646
BstF5I	GGATG	1 cut(s)	900
BstFNI	CGCG	1 cut(s)	122
BstH2I	RGCGCY	2 cut(s)	115, 381
BstHHI	GCGC	2 cut(s)	114, 380
BstKTI	GATC	3 cut(s)	250, 271, 717
BstMBI	GATC	3 cut(s)	247, 268, 714
BstMWI	GCNNNNNNNGC	5 cut(s)	24, 155, 377, 776, 785
BstNI	CCWGG	3 cut(s)	495, 719, 849
BstNSI	RCATGY	3 cut(s)	658, 779, 999
BstPAI	GACNNNNGTC	1 cut(s)	11
BstSCI	CCNGG	3 cut(s)	493, 717, 847
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	3 cut(s)	130, 133, 772
BstV2I	GAAGAC	3 cut(s)	11, 62, 335
BstXI	CCANNNNNNTGG	1 cut(s)	998
BsuRI	GGCC	4 cut(s)	64, 498, 802, 889
BtrI	CACGTC	1 cut(s)	963
BtsCI	GGATG	1 cut(s)	900
BtsI	GCAGTG	1 cut(s)	777
BtsIMutI	CAGTG	2 cut(s)	777, 793
Cac8I	GCNNGC	3 cut(s)	160, 461, 777
CfoI	GCGC	2 cut(s)	114, 380
Cfr10I	RCCGGY	2 cut(s)	100, 158
Cfr13I	GGNCC	2 cut(s)	497, 887
CseI	GACGC	2 cut(s)	151, 452
Csp6I	GTAC	1 cut(s)	442
CspAI	ACCGGT	1 cut(s)	100
CviAII	CATG	4 cut(s)	655, 712, 776, 996
CviQI	GTAC	1 cut(s)	442
DdeI	CTNAG	4 cut(s)	41, 80, 606, 646
DinI	GGCGCC	1 cut(s)	379
DpnI	GATC	3 cut(s)	249, 270, 716
DpnII	GATC	3 cut(s)	247, 268, 714
Eam1104I	CTCTTC	1 cut(s)	962
EarI	CTCTTC	1 cut(s)	962
EciI	GGCGGA	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	381
Eco147I	AGGCCT	1 cut(s)	64
Eco32I	GATATC	1 cut(s)	985
Eco47III	AGCGCT	1 cut(s)	113
EcoRII	CCWGG	3 cut(s)	493, 717, 847
EcoRV	GATATC	1 cut(s)	985
EcoT14I	CCWWGG	1 cut(s)	381
EgeI	GGCGCC	1 cut(s)	379
EheI	GGCGCC	1 cut(s)	379
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	4 cut(s)	658, 715, 779, 999
FalI	AAGNNNNNCTT	6 cut(s)	320, 352, 515, 547, 527, 559
FaqI	GGGAC	1 cut(s)	896
FatI	CATG	4 cut(s)	654, 711, 775, 995
FauI	CCCGC	2 cut(s)	569, 845
FauNDI	CATATG	1 cut(s)	878
Fnu4HI	GCNGC	6 cut(s)	93, 123, 126, 144, 147, 786
FokI	GGATG	1 cut(s)	887
Fsp4HI	GCNGC	6 cut(s)	93, 123, 126, 144, 147, 786
FspBI	CTAG	4 cut(s)	303, 594, 738, 756
GlaI	GCGC	2 cut(s)	113, 379
GluI	GCNGC	6 cut(s)	93, 123, 126, 144, 147, 786
HaeII	RGCGCY	2 cut(s)	115, 381
HaeIII	GGCC	4 cut(s)	64, 498, 802, 889
HapII	CCGG	3 cut(s)	101, 159, 264
HgaI	GACGC	2 cut(s)	151, 452
HhaI	GCGC	2 cut(s)	114, 380
Hin1I	GRCGYC	3 cut(s)	162, 378, 463
Hin1II	CATG	4 cut(s)	658, 715, 779, 999
Hin6I	GCGC	2 cut(s)	112, 378
HinP1I	GCGC	2 cut(s)	112, 378
HincII	GTYRAC	1 cut(s)	47
HindII	GTYRAC	1 cut(s)	47
HindIII	AAGCTT	1 cut(s)	469
HinfI	GANTC	7 cut(s)	43, 168, 287, 395, 427, 675, 837
HpaII	CCGG	3 cut(s)	101, 159, 264
HphI	GGTGA	4 cut(s)	21, 90, 278, 798
Hpy166II	GTNNAC	2 cut(s)	47, 1001
Hpy188I	TCNGA	6 cut(s)	42, 167, 237, 649, 725, 967
Hpy188III	TCNNGA	2 cut(s)	82, 594
Hpy8I	GTNNAC	2 cut(s)	47, 1001
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	4 cut(s)	448, 655, 707, 813
HpyCH4III	ACNGT	4 cut(s)	10, 33, 478, 797
HpyCH4IV	ACGT	1 cut(s)	962
HpyCH4V	TGCA	5 cut(s)	196, 569, 770, 775, 866
HpyF10VI	GCNNNNNNNGC	5 cut(s)	24, 155, 377, 776, 785
HpyF3I	CTNAG	4 cut(s)	41, 80, 606, 646
HpySE526I	ACGT	1 cut(s)	962
Hsp92I	GRCGYC	3 cut(s)	162, 378, 463
Hsp92II	CATG	4 cut(s)	658, 715, 779, 999
HspAI	GCGC	2 cut(s)	112, 378
KasI	GGCGCC	1 cut(s)	377
KroI	GCCGGC	1 cut(s)	158
KroNI	GCCGGC	1 cut(s)	160
Kzo9I	GATC	3 cut(s)	247, 268, 714
Lsp1109I	GCAGC	3 cut(s)	130, 133, 772
LweI	GCATC	3 cut(s)	216, 556, 757
MaeI	CTAG	4 cut(s)	303, 594, 738, 756
MaeII	ACGT	1 cut(s)	962
MalI	GATC	3 cut(s)	249, 270, 716
MbiI	CCGCTC	1 cut(s)	612
MboI	GATC	3 cut(s)	247, 268, 714
MboII	GAAGA	6 cut(s)	16, 29, 62, 340, 949, 992
MluCI	AATT	3 cut(s)	55, 828, 974
Mly113I	GGCGCC	1 cut(s)	378
MlyI	GAGTC	5 cut(s)	52, 177, 296, 421, 846
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	5 cut(s)	54, 166, 455, 682, 1017
MreI	CGCCGGCG	1 cut(s)	158
MroNI	GCCGGC	1 cut(s)	158
MroXI	GAANNNNTTC	1 cut(s)	589
MseI	TTAA	3 cut(s)	522, 533, 1066
MslI	CAYNNNNRTG	2 cut(s)	416, 780
MspA1I	CMGCKG	1 cut(s)	818
MspI	CCGG	3 cut(s)	101, 159, 264
MspR9I	CCNGG	3 cut(s)	495, 719, 849
MvaI	CCWGG	3 cut(s)	495, 719, 849
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	5 cut(s)	24, 155, 377, 776, 785
NaeI	GCCGGC	1 cut(s)	160
NarI	GGCGCC	1 cut(s)	378
NdeI	CATATG	1 cut(s)	878
NdeII	GATC	3 cut(s)	247, 268, 714
NgoMIV	GCCGGC	1 cut(s)	158
NlaIII	CATG	4 cut(s)	658, 715, 779, 999
NlaIV	GGNNCC	1 cut(s)	379
NspI	RCATGY	3 cut(s)	658, 779, 999
PaeI	GCATGC	1 cut(s)	779
PceI	AGGCCT	1 cut(s)	64
PciI	ACATGT	1 cut(s)	654
PcsI	WCGNNNNNNNCGW	2 cut(s)	177, 841
PdiI	GCCGGC	1 cut(s)	160
PdmI	GAANNNNTTC	1 cut(s)	589
PfeI	GAWTC	2 cut(s)	395, 675
PinAI	ACCGGT	1 cut(s)	100
PkrI	GCNGC	6 cut(s)	94, 124, 127, 145, 148, 787
PleI	GAGTC	5 cut(s)	51, 176, 295, 421, 845
PluTI	GGCGCC	1 cut(s)	381
PpsI	GAGTC	5 cut(s)	51, 176, 295, 421, 845
PscI	ACATGT	1 cut(s)	654
PshAI	GACNNNNGTC	1 cut(s)	11
Psp6I	CCWGG	3 cut(s)	493, 717, 847
PspGI	CCWGG	3 cut(s)	493, 717, 847
PspN4I	GGNNCC	1 cut(s)	379
PspPI	GGNCC	2 cut(s)	497, 887
PvuII	CAGCTG	1 cut(s)	818
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
RseI	CAYNNNNRTG	2 cut(s)	416, 780
SaqAI	TTAA	3 cut(s)	522, 533, 1066
SatI	GCNGC	6 cut(s)	93, 123, 126, 144, 147, 786
Sau3AI	GATC	3 cut(s)	247, 268, 714
Sau96I	GGNCC	2 cut(s)	497, 887
SchI	GAGTC	5 cut(s)	52, 177, 296, 421, 846
ScrFI	CCNGG	3 cut(s)	495, 719, 849
SfaNI	GCATC	3 cut(s)	216, 556, 757
SfoI	GGCGCC	1 cut(s)	379
SgrAI	CRCCGGYG	1 cut(s)	158
SmiMI	CAYNNNNRTG	2 cut(s)	416, 780
SpeI	ACTAGT	1 cut(s)	755
SphI	GCATGC	1 cut(s)	779
Sse9I	AATT	3 cut(s)	55, 828, 974
SseBI	AGGCCT	1 cut(s)	64
SsiI	CCGC	7 cut(s)	93, 122, 125, 156, 576, 612, 852
SspDI	GGCGCC	1 cut(s)	377
SspMI	CTAG	4 cut(s)	303, 594, 738, 756
StuI	AGGCCT	1 cut(s)	64
StyD4I	CCNGG	3 cut(s)	493, 717, 847
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	4 cut(s)	10, 33, 478, 797
TaiI	ACGT	1 cut(s)	965
TaqI	TCGA	5 cut(s)	59, 139, 171, 765, 835
TasI	AATT	3 cut(s)	55, 828, 974
TauI	GCSGC	3 cut(s)	95, 125, 128
TfiI	GAWTC	2 cut(s)	395, 675
Tru1I	TTAA	3 cut(s)	522, 533, 1066
Tru9I	TTAA	3 cut(s)	522, 533, 1066
TscAI	CASTG	2 cut(s)	777, 800
TseI	GCWGC	3 cut(s)	143, 146, 785
TspDTI	ATGAA	3 cut(s)	17, 667, 865
TspRI	CASTG	2 cut(s)	777, 800
XbaI	TCTAGA	1 cut(s)	593
XceI	RCATGY	3 cut(s)	658, 779, 999
XmnI	GAANNNNTTC	1 cut(s)	589
XspI	CTAG	4 cut(s)	303, 594, 738, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.