pycom09g01280

Ubiquitin receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0010664
Physical Location & Seq
Reverse (-)
957421 .. 961661
4241 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1170 bp
ATGAAGGTTTTTGTCAAGACTTTGAAGGGCACAAACTTCGAGATCGAAGTGAAACTCGAGGAGACGGTTGCCGATGTCAAGACAATTATAGAGACGGCACAGGGTGCAGATGTGTACCCTGCCCCACAACAGATGCTTATTCATCAGGGGAAAGTTCTTAAGGATGACACAACTCTAGAACAAAATAATGTTGCTGAAAATAGTTTTATCGTGATAATGTTAACCAAGCCTAAGGCCTCACCAGCCGGAGCCTCCAGTAAGCAAGGTGCAGCCACAAGTCAGGCCCAACCTGCTGGTACTGCTCCTACCTCTGCCGCACCACCCCCAGCAGCTCCAGCTCCAGCTCCTGCACCAGTTATAGTTTTACCAAAACCACAGCCCGCCGCTCAAACTGCTGCTGTTGTAGCTCCTACTGATTCAAGATCAGATGTGTATGGCCAAGCTGCATCAAACCTAGTTGCAGGAACTACTTTAGAGTCTACCGTTCAGCAGATTCTAGATATGGGTGGAGGAAGTTGGGATCGGGAAACCGTTGTCCGTGCTTTACGGGCTGCTTTTAACAACCCTGAAAGGGCTGTTGAGTACCTATATTCTGGCATTCCTGAGCAAGCTGAAGCCCCACCAGCGGCCCAAGTTCCTGCTGGTGAACAGGCAGCAAATCCTCCGGCCGCAAATCCTCCAGCGCAGGCTCCACAACCAGTAGCACCTACTGGTGGGCCCAATGCAAACCCACTTGATCTTTTTCCACAGGGCCTTCCCAACATGGGTGCAAATGCCGGTGCGGGCAATTTGGATTTCCTACGCAATAGTCCCCAGTTCCAAGCCTTGCGAGCTATGGTGCAAGCCAACCCCCAAATTCTACAGCCTATGCTTCAAGAGTTGGGGAAACAAAATCCACATCTAATGCAGCTCATTCAAGCTCATCAAGCTGACTTCTTACGCTTGATTAATGAACCCGTTGAAGGGGGTGAAGGGAACCTTTTGGAGCAGTTGGGTGCAGCAGTGCCGCAGGCTGTGACCGTCACCCCTGAAGAGCGAGAGGCCATTGAACGCCTAGAAGCTATGGGTTTCGATCGGGCGCTAGTGCTGGAGGTATACTTTGCATGCAACAAGAACGAGGAGCTGGCGGCCAACTATCTTCTCGATCACATGCACGAGTTTGAGGAATGA

Protein Analysis

390

Amino Acids

41.1

Weight (kDa)

4.67

Isoelectric Point (pI)

51.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 1 - 73 3.5e-06 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 3 - 76 4.9e-18 Ubiquitin family
UBA PF00627 159 - 196 1.5e-11 UBA/TS-N domain
XPC-binding PF09280 264 - 319 1.4e-23 XPC-binding domain
UBA PF00627 345 - 380 8.5e-12 UBA/TS-N domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010664)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16090 AT5G38470 AT5G38470
fragaria_vesca FvH4_6g45190 FvH4_6g45190 FvH4_6g45190 FvH4_6g45190
malus_domestica MD09G1087400.v1.1 MD17G1076200.v1.1
prunus_persica Prupe.3G238000_v2.0.a1
pyrus_communis pycom09g01280 pycom17g07680
rosa_chinensis RchiOBHm_Chr2g0162901
rosa_laevigata RLG00000021360
rosa_rugosa Rorug02G0499200
rosa_samantha Rh2AG565200 Rh2BG577900 Rh2CG547600 Rh2DG588100
rosa_wichuraiana Rw2G046780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 298
AccBSI CCGCTC 1 cut(s) 386
AccI GTMKAC 2 cut(s) 479, 1095
AciI CCGC 8 cut(s) 315, 381, 384, 626, 669, 782, 1007, 1127
AclWI GGATC 1 cut(s) 528
AcoI YGGCCR 3 cut(s) 436, 666, 1128
AcsI RAATTY 1 cut(s) 855
AcuI CTGAAG 2 cut(s) 633, 1050
AdeI CACNNNGTG 1 cut(s) 104
AfaI GTAC 3 cut(s) 116, 298, 584
AfiI CCNNNNNNNGG 6 cut(s) 571, 625, 713, 764, 962, 963
AflII CTTAAG 1 cut(s) 158
AgsI TTSAA 6 cut(s) 25, 420, 875, 917, 962, 1049
Alw26I GTCTC 2 cut(s) 56, 86
AlwI GGATC 1 cut(s) 528
AlwNI CAGNNNCTG 1 cut(s) 347
Ama87I CYCGRG 1 cut(s) 56
AoxI GGCC 9 cut(s) 234, 282, 436, 627, 666, 716, 751, 1041, 1128
ApaI GGGCCC 1 cut(s) 720
ApeKI GCWGC 8 cut(s) 269, 329, 395, 443, 551, 653, 907, 998
ApoI RAATTY 1 cut(s) 855
AseI ATTAAT 1 cut(s) 948
AspLEI GCGC 2 cut(s) 685, 1081
AspS9I GGNCC 5 cut(s) 283, 628, 716, 717, 751
AsuHPI GGTGA 4 cut(s) 231, 656, 980, 1015
AvaI CYCGRG 1 cut(s) 56
AxyI CCTNAGG 1 cut(s) 231
BaeGI GKGCMC 2 cut(s) 32, 720
BalI TGGCCA 1 cut(s) 438
BanII GRGCYC 1 cut(s) 720
BauI CACGAG 1 cut(s) 1154
BbvI GCAGC 8 cut(s) 281, 341, 382, 430, 538, 665, 919, 1010
BceAI ACGGC 1 cut(s) 111
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BcoDI GTCTC 2 cut(s) 56, 86
BfaI CTAG 5 cut(s) 176, 455, 497, 1055, 1082
BfmI CTRYAG 1 cut(s) 860
BfoI RGCGCY 1 cut(s) 1082
BfrI CTTAAG 1 cut(s) 158
BfuAI ACCTGC 1 cut(s) 298
BmeT110I CYCGRG 1 cut(s) 56
BmgT120I GGNCC 5 cut(s) 283, 628, 716, 717, 751
BmiI GGNNCC 4 cut(s) 250, 690, 718, 977
BmrI ACTGGG 1 cut(s) 808
BmsI GCATC 2 cut(s) 123, 455
BmuI ACTGGG 1 cut(s) 808
BpmI CTGGAG 5 cut(s) 238, 318, 324, 663, 1109
Bpu10I CCTNAGC 1 cut(s) 603
Bsc4I CCNNNNNNNGG 6 cut(s) 571, 625, 713, 764, 962, 963
Bse118I RCCGGY 1 cut(s) 776
Bse1I ACTGG 5 cut(s) 255, 353, 698, 715, 814
Bse21I CCTNAGG 1 cut(s) 231
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 6 cut(s) 571, 625, 713, 764, 962, 963
BseMII CTCAG 1 cut(s) 594
BseNI ACTGG 5 cut(s) 255, 353, 698, 715, 814
BseRI GAGGAG 2 cut(s) 74, 1133
BseSI GKGCMC 2 cut(s) 32, 720
BseX3I CGGCCG 1 cut(s) 666
BseXI GCAGC 8 cut(s) 281, 341, 382, 430, 538, 665, 919, 1010
BseYI CCCAGC 1 cut(s) 325
BsgI GTGCAG 4 cut(s) 126, 288, 333, 1017
Bsh1285I CGRYCG 2 cut(s) 669, 1075
BshFI GGCC 9 cut(s) 236, 284, 438, 629, 668, 718, 753, 1043, 1130
BsiEI CGRYCG 2 cut(s) 669, 1075
BsiHKCI CYCGRG 1 cut(s) 56
BsiSI CCGG 3 cut(s) 246, 665, 777
BslFI GGGAC 1 cut(s) 795
BslI CCNNNNNNNGG 6 cut(s) 571, 625, 713, 764, 962, 963
BsmAI GTCTC 2 cut(s) 56, 86
BsmBI CGTCTC 2 cut(s) 56, 86
BsmFI GGGAC 1 cut(s) 795
BsmI GAATGC 1 cut(s) 597
BsnI GGCC 9 cut(s) 236, 284, 438, 629, 668, 718, 753, 1043, 1130
BsoBI CYCGRG 1 cut(s) 56
Bsp120I GGGCCC 1 cut(s) 716
Bsp1286I GDGCHC 2 cut(s) 32, 720
Bsp143I GATC 6 cut(s) 42, 422, 520, 736, 1072, 1144
BspACI CCGC 8 cut(s) 315, 381, 384, 626, 669, 782, 1007, 1127
BspANI GGCC 9 cut(s) 236, 284, 438, 629, 668, 718, 753, 1043, 1130
BspCNI CTCAG 1 cut(s) 595
BspLI GGNNCC 4 cut(s) 250, 690, 718, 977
BspMI ACCTGC 1 cut(s) 298
BspPI GGATC 1 cut(s) 528
BspQI GCTCTTC 1 cut(s) 1026
BspTI CTTAAG 1 cut(s) 158
BsrBI CCGCTC 1 cut(s) 386
BsrFI RCCGGY 1 cut(s) 776
BsrI ACTGG 5 cut(s) 255, 353, 698, 715, 814
BssAI RCCGGY 1 cut(s) 776
BssMI GATC 6 cut(s) 42, 422, 520, 736, 1072, 1144
BssNAI GTATAC 1 cut(s) 1096
BssSI CACGAG 1 cut(s) 1154
Bst1107I GTATAC 1 cut(s) 1096
Bst2BI CACGAG 1 cut(s) 1154
Bst4CI ACNGT 4 cut(s) 67, 484, 532, 1021
Bst6I CTCTTC 1 cut(s) 1026
BstAFI CTTAAG 1 cut(s) 158
BstAPI GCANNNNNTGC 1 cut(s) 104
BstC8I GCNNGC 9 cut(s) 381, 609, 687, 784, 831, 843, 1011, 1105, 1125
BstDEI CTNAG 2 cut(s) 231, 603
BstF5I GGATG 1 cut(s) 169
BstH2I RGCGCY 1 cut(s) 1082
BstHHI GCGC 2 cut(s) 685, 1081
BstKTI GATC 6 cut(s) 45, 425, 523, 739, 1075, 1147
BstMAI GTCTC 2 cut(s) 56, 86
BstMBI GATC 6 cut(s) 42, 422, 520, 736, 1072, 1144
BstMCI CGRYCG 2 cut(s) 669, 1075
BstNSI RCATGY 2 cut(s) 1107, 1153
BstSFI CTRYAG 1 cut(s) 860
BstSLI GKGCMC 2 cut(s) 32, 720
BstV1I GCAGC 8 cut(s) 281, 341, 382, 430, 538, 665, 919, 1010
BstXI CCANNNNNNTGG 1 cut(s) 293
BstZ17I GTATAC 1 cut(s) 1096
BstZI CGGCCG 1 cut(s) 666
Bsu36I CCTNAGG 1 cut(s) 231
BsuRI GGCC 9 cut(s) 236, 284, 438, 629, 668, 718, 753, 1043, 1130
BtsCI GGATG 1 cut(s) 169
BtsI GCAGTG 1 cut(s) 1008
BtsIMutI CAGTG 1 cut(s) 1008
BveI ACCTGC 1 cut(s) 298
Cac8I GCNNGC 9 cut(s) 381, 609, 687, 784, 831, 843, 1011, 1105, 1125
CaiI CAGNNNCTG 1 cut(s) 347
CfoI GCGC 2 cut(s) 685, 1081
Cfr10I RCCGGY 1 cut(s) 776
Cfr13I GGNCC 5 cut(s) 283, 628, 716, 717, 751
Csp6I GTAC 3 cut(s) 115, 297, 583
CviAII CATG 3 cut(s) 763, 1104, 1150
CviQI GTAC 3 cut(s) 115, 297, 583
DdeI CTNAG 2 cut(s) 231, 603
DpnI GATC 6 cut(s) 44, 424, 522, 738, 1074, 1146
DpnII GATC 6 cut(s) 42, 422, 520, 736, 1072, 1144
DraIII CACNNNGTG 1 cut(s) 104
EaeI YGGCCR 3 cut(s) 436, 666, 1128
EagI CGGCCG 1 cut(s) 666
Eam1104I CTCTTC 1 cut(s) 1026
EarI CTCTTC 1 cut(s) 1026
EclXI CGGCCG 1 cut(s) 666
Eco147I AGGCCT 1 cut(s) 236
Eco24I GRGCYC 1 cut(s) 720
Eco52I CGGCCG 1 cut(s) 666
Eco57I CTGAAG 2 cut(s) 633, 1050
Eco81I CCTNAGG 1 cut(s) 231
Eco88I CYCGRG 1 cut(s) 56
EcoO109I RGGNCCY 1 cut(s) 751
EcoT38I GRGCYC 1 cut(s) 720
Esp3I CGTCTC 2 cut(s) 56, 86
FaeI CATG 3 cut(s) 766, 1107, 1153
FalI AAGNNNNNCTT 2 cut(s) 963, 995
FaqI GGGAC 1 cut(s) 795
FatI CATG 3 cut(s) 762, 1103, 1149
FauI CCCGC 2 cut(s) 388, 775
FblI GTMKAC 2 cut(s) 479, 1095
FokI GGATG 1 cut(s) 176
FriOI GRGCYC 1 cut(s) 720
FspBI CTAG 5 cut(s) 176, 455, 497, 1055, 1082
GlaI GCGC 2 cut(s) 684, 1080
GsaI CCCAGC 1 cut(s) 329
GsuI CTGGAG 5 cut(s) 238, 318, 324, 663, 1109
HaeII RGCGCY 1 cut(s) 1082
HaeIII GGCC 9 cut(s) 236, 284, 438, 629, 668, 718, 753, 1043, 1130
HapII CCGG 3 cut(s) 246, 665, 777
HhaI GCGC 2 cut(s) 685, 1081
Hin1II CATG 3 cut(s) 766, 1107, 1153
Hin6I GCGC 2 cut(s) 683, 1079
HinP1I GCGC 2 cut(s) 683, 1079
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HinfI GANTC 3 cut(s) 416, 476, 493
HpaI GTTAAC 1 cut(s) 222
HpaII CCGG 3 cut(s) 246, 665, 777
HphI GGTGA 4 cut(s) 231, 656, 980, 1015
Hpy166II GTNNAC 5 cut(s) 115, 222, 480, 647, 1096
Hpy188I TCNGA 1 cut(s) 427
Hpy8I GTNNAC 5 cut(s) 115, 222, 480, 647, 1096
HpyAV CCTTC 4 cut(s) 19, 764, 956, 965
HpyCH4III ACNGT 4 cut(s) 67, 484, 532, 1021
HpyF3I CTNAG 2 cut(s) 231, 603
Hsp92II CATG 3 cut(s) 766, 1107, 1153
HspAI GCGC 2 cut(s) 683, 1079
KspAI GTTAAC 1 cut(s) 222
Kzo9I GATC 6 cut(s) 42, 422, 520, 736, 1072, 1144
LguI GCTCTTC 1 cut(s) 1026
LmnI GCTCC 9 cut(s) 248, 307, 337, 343, 349, 412, 694, 985, 1120
Lsp1109I GCAGC 8 cut(s) 281, 341, 382, 430, 538, 665, 919, 1010
LweI GCATC 2 cut(s) 123, 455
MaeI CTAG 5 cut(s) 176, 455, 497, 1055, 1082
MaeIII GTNAC 2 cut(s) 1015, 1021
MalI GATC 6 cut(s) 44, 424, 522, 738, 1074, 1146
MbiI CCGCTC 1 cut(s) 386
MboI GATC 6 cut(s) 42, 422, 520, 736, 1072, 1144
MboII GAAGA 2 cut(s) 1043, 1130
MhlI GDGCHC 2 cut(s) 32, 720
MlsI TGGCCA 1 cut(s) 438
MluCI AATT 3 cut(s) 84, 787, 855
MluNI TGGCCA 1 cut(s) 438
MlyI GAGTC 1 cut(s) 485
Mox20I TGGCCA 1 cut(s) 438
MscI TGGCCA 1 cut(s) 438
MseI TTAA 4 cut(s) 159, 221, 558, 948
Msp20I TGGCCA 1 cut(s) 438
MspA1I CMGCKG 1 cut(s) 626
MspCI CTTAAG 1 cut(s) 158
MspI CCGG 3 cut(s) 246, 665, 777
Mva1269I GAATGC 1 cut(s) 597
NdeII GATC 6 cut(s) 42, 422, 520, 736, 1072, 1144
NlaIII CATG 3 cut(s) 766, 1107, 1153
NlaIV GGNNCC 4 cut(s) 250, 690, 718, 977
NmuCI GTSAC 2 cut(s) 1015, 1021
NspI RCATGY 2 cut(s) 1107, 1153
PaeI GCATGC 1 cut(s) 1107
PaeR7I CTCGAG 1 cut(s) 56
PceI AGGCCT 1 cut(s) 236
PciSI GCTCTTC 1 cut(s) 1026
PctI GAATGC 1 cut(s) 597
PfeI GAWTC 2 cut(s) 416, 493
Ple19I CGATCG 1 cut(s) 1075
PleI GAGTC 1 cut(s) 484
PpsI GAGTC 1 cut(s) 484
PshBI ATTAAT 1 cut(s) 948
PspFI CCCAGC 1 cut(s) 325
PspN4I GGNNCC 4 cut(s) 250, 690, 718, 977
PspOMI GGGCCC 1 cut(s) 716
PspPI GGNCC 5 cut(s) 283, 628, 716, 717, 751
PspXI VCTCGAGB 1 cut(s) 56
PstNI CAGNNNCTG 1 cut(s) 347
PvuI CGATCG 1 cut(s) 1075
RsaI GTAC 3 cut(s) 116, 298, 584
RsaNI GTAC 3 cut(s) 115, 297, 583
SapI GCTCTTC 1 cut(s) 1026
SaqAI TTAA 4 cut(s) 159, 221, 558, 948
Sau3AI GATC 6 cut(s) 42, 422, 520, 736, 1072, 1144
Sau96I GGNCC 5 cut(s) 283, 628, 716, 717, 751
SchI GAGTC 1 cut(s) 485
SduI GDGCHC 2 cut(s) 32, 720
SfaNI GCATC 2 cut(s) 123, 455
SfcI CTRYAG 1 cut(s) 860
Sfr274I CTCGAG 1 cut(s) 56
SlaI CTCGAG 1 cut(s) 56
SmlI CTYRAG 2 cut(s) 56, 158
SmoI CTYRAG 2 cut(s) 56, 158
SphI GCATGC 1 cut(s) 1107
Sse9I AATT 3 cut(s) 84, 787, 855
SseBI AGGCCT 1 cut(s) 236
SsiI CCGC 8 cut(s) 315, 381, 384, 626, 669, 782, 1007, 1127
SspMI CTAG 5 cut(s) 176, 455, 497, 1055, 1082
StuI AGGCCT 1 cut(s) 236
TaaI ACNGT 4 cut(s) 67, 484, 532, 1021
TaqI TCGA 5 cut(s) 39, 45, 57, 1071, 1143
TasI AATT 3 cut(s) 84, 787, 855
TauI GCSGC 6 cut(s) 317, 386, 629, 671, 1009, 1130
TfiI GAWTC 2 cut(s) 416, 493
Tru1I TTAA 4 cut(s) 159, 221, 558, 948
Tru9I TTAA 4 cut(s) 159, 221, 558, 948
TscAI CASTG 1 cut(s) 1008
TseFI GTSAC 2 cut(s) 1015, 1021
TseI GCWGC 8 cut(s) 269, 329, 395, 443, 551, 653, 907, 998
Tsp45I GTSAC 2 cut(s) 1015, 1021
TspDTI ATGAA 3 cut(s) 17, 131, 966
TspGWI ACGGA 1 cut(s) 527
TspRI CASTG 1 cut(s) 1008
Vha464I CTTAAG 1 cut(s) 158
VspI ATTAAT 1 cut(s) 948
XapI RAATTY 1 cut(s) 855
XbaI TCTAGA 2 cut(s) 175, 496
XceI RCATGY 2 cut(s) 1107, 1153
XcmI CCANNNNNNNNNTGG 1 cut(s) 638
XhoI CTCGAG 1 cut(s) 56
XmiI GTMKAC 2 cut(s) 479, 1095
XspI CTAG 5 cut(s) 176, 455, 497, 1055, 1082
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.