pycom09g11740

Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0011563
Physical Location & Seq
Reverse (-)
9933294 .. 9933816
523 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 393 bp
ATGGCAGTTGGAATGCACAAAATTTTGGTGATTGGAATCGGCATTTTTGTCAGCTGTTTGCTGCTCCAATGCGAACAAGTTGATGCAAAAGAATATATAGTGGGGGATGAGAAAAGATGGAGCCCTGATGCCAACTTAACCCAGTGGACTGAGGGCAAGAAGTTCAAGGCCGGAGATGTTTTGGTTTTCAAATATAATAAAGATCCCTTTCTCATGGTAGCTGCTGTACGGGACAAGTATTTGTTCGAGAAGTGTGACTTATATGCCGGTGCGATAAACATATACCGTTCAGGAAACGATCATGTGGTATTGGAGAAGGGCACAACCTACTTCGCACCTTATCTGACTCCCTATTGTGAAAATGGAATGAAACTTACAATTGATGTGGTGTAA

Protein Analysis

131

Amino Acids

14.71

Weight (kDa)

6.09

Isoelectric Point (pI)

35.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 40 - 123 2.6e-14 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 197
AcsI RAATTY 1 cut(s) 21
AfaI GTAC 1 cut(s) 228
AgsI TTSAA 2 cut(s) 166, 190
AluBI AGCT 2 cut(s) 54, 221
AluI AGCT 2 cut(s) 54, 221
AlwI GGATC 1 cut(s) 197
AoxI GGCC 1 cut(s) 168
ApeKI GCWGC 2 cut(s) 61, 221
ApoI RAATTY 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 40
BaeGI GKGCMC 1 cut(s) 323
BanII GRGCYC 1 cut(s) 125
BbvI GCAGC 2 cut(s) 48, 208
BccI CCATC 1 cut(s) 111
BisI GCNGC 2 cut(s) 62, 222
BlsI GCNGC 2 cut(s) 63, 223
BmiI GGNNCC 1 cut(s) 122
BmrI ACTGGG 1 cut(s) 136
BmsI GCATC 2 cut(s) 73, 118
BmuI ACTGGG 1 cut(s) 136
BsaBI GATNNNNATC 1 cut(s) 35
Bse118I RCCGGY 1 cut(s) 266
Bse1I ACTGG 1 cut(s) 142
Bse8I GATNNNNATC 1 cut(s) 35
BseGI GGATG 1 cut(s) 112
BseJI GATNNNNATC 1 cut(s) 35
BseMII CTCAG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 142
BseSI GKGCMC 1 cut(s) 323
BseXI GCAGC 2 cut(s) 48, 208
BshFI GGCC 1 cut(s) 170
BsiSI CCGG 2 cut(s) 171, 267
BslFI GGGAC 1 cut(s) 245
BsmFI GGGAC 1 cut(s) 245
BsmI GAATGC 1 cut(s) 18
BsnI GGCC 1 cut(s) 170
Bsp1286I GDGCHC 2 cut(s) 125, 323
Bsp143I GATC 2 cut(s) 202, 298
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 122
BspPI GGATC 1 cut(s) 197
BsrFI RCCGGY 1 cut(s) 266
BsrI ACTGG 1 cut(s) 142
BssAI RCCGGY 1 cut(s) 266
BssMI GATC 2 cut(s) 202, 298
Bst4CI ACNGT 1 cut(s) 287
BstDEI CTNAG 1 cut(s) 150
BstF5I GGATG 1 cut(s) 112
BstKTI GATC 2 cut(s) 205, 301
BstMBI GATC 2 cut(s) 202, 298
BstSLI GKGCMC 1 cut(s) 323
BstV1I GCAGC 2 cut(s) 48, 208
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
BsuRI GGCC 1 cut(s) 170
BtsCI GGATG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 149
Cfr10I RCCGGY 1 cut(s) 266
Csp6I GTAC 1 cut(s) 227
CspCI CAANNNNNGTGG 1 cut(s) 366
CviAII CATG 2 cut(s) 214, 302
CviJI RGCY 4 cut(s) 54, 123, 170, 221
CviKI_1 RGCY 4 cut(s) 54, 123, 170, 221
CviQI GTAC 1 cut(s) 227
DdeI CTNAG 1 cut(s) 150
DpnI GATC 2 cut(s) 204, 300
DpnII GATC 2 cut(s) 202, 298
Eco24I GRGCYC 1 cut(s) 125
EcoT38I GRGCYC 1 cut(s) 125
FaeI CATG 2 cut(s) 217, 305
FaiI YATR 9 cut(s) 96, 98, 195, 215, 262, 264, 281, 283, 303
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FaqI GGGAC 1 cut(s) 245
FatI CATG 2 cut(s) 213, 301
Fnu4HI GCNGC 2 cut(s) 62, 222
FokI GGATG 1 cut(s) 119
FriOI GRGCYC 1 cut(s) 125
Fsp4HI GCNGC 2 cut(s) 62, 222
GluI GCNGC 2 cut(s) 62, 222
HaeIII GGCC 1 cut(s) 170
HapII CCGG 2 cut(s) 171, 267
Hin1II CATG 2 cut(s) 217, 305
HinfI GANTC 2 cut(s) 36, 346
HpaII CCGG 2 cut(s) 171, 267
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 1 cut(s) 147
Hpy188I TCNGA 1 cut(s) 345
Hpy188III TCNNGA 2 cut(s) 247, 291
Hpy8I GTNNAC 1 cut(s) 147
HpyAV CCTTC 1 cut(s) 310
HpyCH4III ACNGT 1 cut(s) 287
HpyCH4V TGCA 2 cut(s) 16, 86
HpyF3I CTNAG 1 cut(s) 150
Hsp92II CATG 2 cut(s) 217, 305
Kzo9I GATC 2 cut(s) 202, 298
LmnI GCTCC 2 cut(s) 69, 120
LpnPI CCDG 5 cut(s) 138, 155, 184, 276, 280
Lsp1109I GCAGC 2 cut(s) 48, 208
LweI GCATC 2 cut(s) 73, 118
MaeIII GTNAC 1 cut(s) 254
MalI GATC 2 cut(s) 204, 300
MboI GATC 2 cut(s) 202, 298
MfeI CAATTG 1 cut(s) 378
MflI RGATCY 1 cut(s) 202
MhlI GDGCHC 2 cut(s) 125, 323
MluCI AATT 2 cut(s) 21, 378
MlyI GAGTC 1 cut(s) 340
MnlI CCTC 1 cut(s) 145
MseI TTAA 1 cut(s) 137
MspA1I CMGCKG 1 cut(s) 54
MspI CCGG 2 cut(s) 171, 267
MunI CAATTG 1 cut(s) 378
Mva1269I GAATGC 1 cut(s) 18
NdeII GATC 2 cut(s) 202, 298
NlaIII CATG 2 cut(s) 217, 305
NlaIV GGNNCC 1 cut(s) 122
NmuCI GTSAC 1 cut(s) 254
PctI GAATGC 1 cut(s) 18
PfeI GAWTC 1 cut(s) 36
PkrI GCNGC 2 cut(s) 63, 223
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
PspN4I GGNNCC 1 cut(s) 122
PsuI RGATCY 1 cut(s) 202
PvuII CAGCTG 1 cut(s) 54
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
SaqAI TTAA 1 cut(s) 137
SatI GCNGC 2 cut(s) 62, 222
Sau3AI GATC 2 cut(s) 202, 298
SchI GAGTC 1 cut(s) 340
SduI GDGCHC 2 cut(s) 125, 323
SetI ASST 4 cut(s) 56, 223, 329, 340
SfaNI GCATC 2 cut(s) 73, 118
Sse9I AATT 2 cut(s) 21, 378
TaaI ACNGT 1 cut(s) 287
TaqI TCGA 1 cut(s) 246
TasI AATT 2 cut(s) 21, 378
TfiI GAWTC 1 cut(s) 36
Tru1I TTAA 1 cut(s) 137
Tru9I TTAA 1 cut(s) 137
TscAI CASTG 1 cut(s) 149
TseFI GTSAC 1 cut(s) 254
TseI GCWGC 2 cut(s) 61, 221
Tsp45I GTSAC 1 cut(s) 254
TspDTI ATGAA 1 cut(s) 383
TspRI CASTG 1 cut(s) 149
XapI RAATTY 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.