pycom1094g00130

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00001094
OG0011748
Physical Location & Seq
Forward (+)
252556 .. 253798
1243 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 360 bp
ATGACTACCGGTTCAGATGTTCGACCTGGTGACTGGTACTGCGCTGCTGGCAACTGTGGAGCCCACAATTTTGCAAGCCGTTCCAGCTGCTTCAAATGTGGTACTTTCAAGGATGATTCTGCCGCTGGCGGTGGTTGTGGATTTGACTCTGACCTGCCACGCTCCCGGGGTTTTGGGTTAGGACTTGGAGGTGGTGGCGGCATTGGCGGAGCAGGTGGTGGCGGCATTGGCGGAACAGGTGGTGGTCGACCTGGATGGAAATCTGGAGATTGGATTTGTACCAGGTTGGGGTGCAACGAGCACAACTTTGCTAGCAGAATGGAATGCTTTAGATGCAATGCCCCAAGAGACTCATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

120

Amino Acids

12.0

Weight (kDa)

8.11

Isoelectric Point (pI)

49.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 87 - 116 3e-08 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011748)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15680 AT3G15680
fragaria_vesca FvH4_6g30320 FvH4_6g30320 FvH4_6g30320 FvH4_6g30320
malus_domestica MD09G1220800.v1.1 MD17G1204500.v1.1
prunus_persica Prupe.3G080000_v2.0.a1
pyrus_communis pycom1094g00130 pycom17g20840
rosa_chinensis RchiOBHm_Chr2g0136561
rosa_laevigata RLG00000019541
rosa_multiflora Rmu_sc0006440.1_g000002 Rmu_sc0006440.1_g000003
rosa_roxburghii Rroxscaffold_2G00108170
rosa_rugosa Rorug02G0332000
rosa_samantha Rh2AG382800
rosa_wichuraiana Rw2G031290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 203
Acc36I ACCTGC 2 cut(s) 162, 203
AccI GTMKAC 1 cut(s) 247
AciI CCGC 6 cut(s) 123, 129, 198, 207, 222, 231
AfaI GTAC 3 cut(s) 38, 103, 280
AfiI CCNNNNNNNGG 1 cut(s) 288
AgeI ACCGGT 1 cut(s) 8
AgsI TTSAA 2 cut(s) 94, 109
AjnI CCWGG 3 cut(s) 25, 250, 281
AluBI AGCT 1 cut(s) 87
AluI AGCT 1 cut(s) 87
Alw21I GWGCWC 1 cut(s) 303
Alw26I GTCTC 1 cut(s) 342
Ama87I CYCGRG 1 cut(s) 165
ApeKI GCWGC 2 cut(s) 44, 87
AsiGI ACCGGT 1 cut(s) 8
AspLEI GCGC 1 cut(s) 44
AsuC2I CCSGG 2 cut(s) 166, 167
AsuHPI GGTGA 1 cut(s) 41
AsuNHI GCTAGC 1 cut(s) 311
AvaI CYCGRG 1 cut(s) 165
BanII GRGCYC 1 cut(s) 64
Bbv12I GWGCWC 1 cut(s) 303
BbvI GCAGC 2 cut(s) 31, 74
BccI CCATC 1 cut(s) 249
BceAI ACGGC 1 cut(s) 63
BciT130I CCWGG 3 cut(s) 27, 252, 283
BcnI CCSGG 2 cut(s) 166, 167
BcoDI GTCTC 1 cut(s) 342
BfaI CTAG 2 cut(s) 312, 358
BfuAI ACCTGC 2 cut(s) 162, 203
BisI GCNGC 5 cut(s) 45, 88, 123, 199, 223
BlsI GCNGC 5 cut(s) 46, 89, 124, 200, 224
Bme1390I CCNGG 5 cut(s) 27, 166, 167, 252, 283
BmeT110I CYCGRG 1 cut(s) 165
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 5 cut(s) 27, 166, 167, 252, 283
BmsI GCATC 1 cut(s) 323
BmtI GCTAGC 1 cut(s) 315
BpmI CTGGAG 1 cut(s) 285
BpuMI CCSGG 2 cut(s) 166, 167
BsaBI GATNNNNATC 1 cut(s) 259
BsaJI CCNNGG 2 cut(s) 165, 166
BsaWI WCCGGW 1 cut(s) 8
Bsc4I CCNNNNNNNGG 1 cut(s) 288
Bse118I RCCGGY 1 cut(s) 8
Bse1I ACTGG 1 cut(s) 38
Bse3DI GCAATG 1 cut(s) 343
Bse8I GATNNNNATC 1 cut(s) 259
BseBI CCWGG 3 cut(s) 27, 252, 283
BseDI CCNNGG 2 cut(s) 165, 166
BseGI GGATG 2 cut(s) 118, 260
BseJI GATNNNNATC 1 cut(s) 259
BseLI CCNNNNNNNGG 1 cut(s) 288
BseMI GCAATG 1 cut(s) 343
BseNI ACTGG 1 cut(s) 38
BseXI GCAGC 2 cut(s) 31, 74
BshTI ACCGGT 1 cut(s) 8
BsiHKAI GWGCWC 1 cut(s) 303
BsiHKCI CYCGRG 1 cut(s) 165
BsiSI CCGG 2 cut(s) 9, 166
BslI CCNNNNNNNGG 1 cut(s) 288
BsmAI GTCTC 1 cut(s) 342
BsmI GAATGC 1 cut(s) 329
BsoBI CYCGRG 1 cut(s) 165
Bsp1286I GDGCHC 2 cut(s) 64, 303
BspACI CCGC 6 cut(s) 123, 129, 198, 207, 222, 231
BspLI GGNNCC 1 cut(s) 61
BspMI ACCTGC 2 cut(s) 162, 203
BspOI GCTAGC 1 cut(s) 315
BsrDI GCAATG 1 cut(s) 343
BsrFI RCCGGY 1 cut(s) 8
BsrI ACTGG 1 cut(s) 38
BssAI RCCGGY 1 cut(s) 8
BssECI CCNNGG 2 cut(s) 165, 166
Bst2UI CCWGG 3 cut(s) 27, 252, 283
Bst4CI ACNGT 1 cut(s) 56
BstC8I GCNNGC 4 cut(s) 49, 76, 127, 313
BstF5I GGATG 2 cut(s) 118, 260
BstHHI GCGC 1 cut(s) 44
BstMAI GTCTC 1 cut(s) 342
BstMWI GCNNNNNNNGC 5 cut(s) 48, 84, 204, 228, 333
BstNI CCWGG 3 cut(s) 27, 252, 283
BstSCI CCNGG 5 cut(s) 25, 164, 165, 250, 281
BstV1I GCAGC 2 cut(s) 31, 74
BtsCI GGATG 2 cut(s) 118, 260
BveI ACCTGC 2 cut(s) 162, 203
Cac8I GCNNGC 4 cut(s) 49, 76, 127, 313
CfoI GCGC 1 cut(s) 44
Cfr10I RCCGGY 1 cut(s) 8
Cfr9I CCCGGG 1 cut(s) 165
CsiI ACCWGGT 2 cut(s) 25, 281
Csp6I GTAC 3 cut(s) 37, 102, 279
CspAI ACCGGT 1 cut(s) 8
CviJI RGCY 3 cut(s) 62, 78, 87
CviKI_1 RGCY 3 cut(s) 62, 78, 87
CviQI GTAC 3 cut(s) 37, 102, 279
EciI GGCGGA 2 cut(s) 222, 246
Eco24I GRGCYC 1 cut(s) 64
Eco88I CYCGRG 1 cut(s) 165
EcoRII CCWGG 3 cut(s) 25, 250, 281
EcoT38I GRGCYC 1 cut(s) 64
FaiI YATR 1 cut(s) 355
FblI GTMKAC 1 cut(s) 247
Fnu4HI GCNGC 5 cut(s) 45, 88, 123, 199, 223
FokI GGATG 2 cut(s) 125, 267
FriOI GRGCYC 1 cut(s) 64
Fsp4HI GCNGC 5 cut(s) 45, 88, 123, 199, 223
FspBI CTAG 2 cut(s) 312, 358
GlaI GCGC 1 cut(s) 43
GluI GCNGC 5 cut(s) 45, 88, 123, 199, 223
GsuI CTGGAG 1 cut(s) 285
HapII CCGG 2 cut(s) 9, 166
HhaI GCGC 1 cut(s) 44
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HincII GTYRAC 1 cut(s) 248
HindII GTYRAC 1 cut(s) 248
HinfI GANTC 3 cut(s) 116, 146, 350
HpaII CCGG 2 cut(s) 9, 166
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 1 cut(s) 248
Hpy188I TCNGA 2 cut(s) 16, 151
Hpy188III TCNNGA 1 cut(s) 264
Hpy8I GTNNAC 1 cut(s) 248
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4V TGCA 3 cut(s) 74, 294, 336
HpyF10VI GCNNNNNNNGC 5 cut(s) 48, 84, 204, 228, 333
HspAI GCGC 1 cut(s) 42
LmnI GCTCC 3 cut(s) 59, 167, 209
Lsp1109I GCAGC 2 cut(s) 31, 74
LweI GCATC 1 cut(s) 323
MabI ACCWGGT 2 cut(s) 25, 281
MaeI CTAG 2 cut(s) 312, 358
MaeIII GTNAC 1 cut(s) 29
MhlI GDGCHC 2 cut(s) 64, 303
MluCI AATT 1 cut(s) 67
MlyI GAGTC 2 cut(s) 140, 344
MnlI CCTC 1 cut(s) 182
MspA1I CMGCKG 2 cut(s) 87, 125
MspI CCGG 2 cut(s) 9, 166
MspR9I CCNGG 5 cut(s) 27, 166, 167, 252, 283
Mva1269I GAATGC 1 cut(s) 329
MvaI CCWGG 3 cut(s) 27, 252, 283
MwoI GCNNNNNNNGC 5 cut(s) 48, 84, 204, 228, 333
NciI CCSGG 2 cut(s) 166, 167
NheI GCTAGC 1 cut(s) 311
NlaIV GGNNCC 1 cut(s) 61
NmuCI GTSAC 1 cut(s) 29
PaqCI CACCTGC 1 cut(s) 203
PctI GAATGC 1 cut(s) 329
PfeI GAWTC 1 cut(s) 116
PinAI ACCGGT 1 cut(s) 8
PkrI GCNGC 5 cut(s) 46, 89, 124, 200, 224
PleI GAGTC 2 cut(s) 140, 344
PpsI GAGTC 2 cut(s) 140, 344
Psp6I CCWGG 3 cut(s) 25, 250, 281
PspGI CCWGG 3 cut(s) 25, 250, 281
PspN4I GGNNCC 1 cut(s) 61
PvuII CAGCTG 1 cut(s) 87
RsaI GTAC 3 cut(s) 38, 103, 280
RsaNI GTAC 3 cut(s) 37, 102, 279
SalI GTCGAC 1 cut(s) 246
SatI GCNGC 5 cut(s) 45, 88, 123, 199, 223
SchI GAGTC 2 cut(s) 140, 344
ScrFI CCNGG 5 cut(s) 27, 166, 167, 252, 283
SduI GDGCHC 2 cut(s) 64, 303
SetI ASST 8 cut(s) 28, 89, 156, 193, 217, 241, 253, 287
SexAI ACCWGGT 2 cut(s) 25, 281
SfaNI GCATC 1 cut(s) 323
SmaI CCCGGG 1 cut(s) 167
Sse9I AATT 1 cut(s) 67
SsiI CCGC 6 cut(s) 123, 129, 198, 207, 222, 231
SspMI CTAG 2 cut(s) 312, 358
StyD4I CCNGG 5 cut(s) 25, 164, 165, 250, 281
TaaI ACNGT 1 cut(s) 56
TaqI TCGA 2 cut(s) 22, 247
TasI AATT 1 cut(s) 67
TauI GCSGC 3 cut(s) 125, 201, 225
TfiI GAWTC 1 cut(s) 116
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 2 cut(s) 44, 87
Tsp45I GTSAC 1 cut(s) 29
TspMI CCCGGG 1 cut(s) 165
XmaI CCCGGG 1 cut(s) 165
XmiI GTMKAC 1 cut(s) 247
XspI CTAG 2 cut(s) 312, 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.