Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008530

Physical Location & Seq

Genomic Coordinates Reverse (-)

539958 .. 542673

Gene Structure 2716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGCCATGTAGATGTAAATATTACAAAAGAAAAAGGAACAAACAAAGAGAAAATACAGAGAGGACAAGCAAGGTAATCACATCCACCCAGCAAAATGACAAATACACTAAAAGAAAAAACGGGTCGGTGATAACGCCCAGCACCCACCCACCTGGCAATCCCTGCTTCAAGCACACTAACTACAACAACCCTACCCTTCACACAATCCCCATTTTCTTTCTTCTTCCATCACTTTCCTTCCATTTCCCCTCAAAATTTTCCCAGGAAACAAACACCATGCTTGGTCCCAACACAAACACACATGAACACCCTTTCCTCTTCAACGGCGGCGCCGACGACCAAATTAAAGGGGACACAACAACCTACGATTCTTGGCAGGCCGTAAATTACGCTTCCCGGGCTCAGAAAACTGCTCAAAATTATGCAAACTACAGGAGTTGGAACAGCATGGACGCCCGTATCAACGTCGATACTACTCCTGCTGCCCCCTATGATGAGTCTGACTCGCCGCCGTTGTGGAAGACGACGAACCGCGTGAACAACTACCGGAGTCTTTCCCCGACTTCGAGAACGCAAGCGATTGCCAGAGGACAGAGGGAGCTGATGGAGATGGTGAAGAACATGCCCGAGCCGTGCTATGAGCTTTCACTGAAAGATCTCGTCGAGCATAAGTATAGGACAATGGGTGGTGAAGAAGAAGATCGAGATCAAGAGGAAGAAGATGATAATAGAAGTACTGAGAATTTGATGATCAGGATGGGAAATGGAAACGGAAGCGTAAACGAAAGGAAGAACAATGGTGCGAGAAAGAAAATGGTGATGAGGAGTGCGAGTATAGATAGTGGGGGGTTTCTTTTGAAGATGGTTTTGCCAATTTCTTTGGGGGGTAAGAAGAACAACAAGAGCATTAAGAAGAAGGGTGGGTGTTTGGCAGTGGGTGCAAATAGCAATAATACGAGTGCGAAGGTGTCTCCAAAGCCTCAGGGGGTGGATGGATCTGTGAAGGGAGTGGGTGTGGATAATGAATGGTGGAAGATGAAGAGAGTTTCTGTATCAGAAAGGAGCGAAAGTGGTGTTTCTAGCATCAATAGTGGGAGCATGAAAAGCAGCGGCAGCAGTAGCAGCAGCAGTAGTTGTAGCAGCAGAAGCAACAGCAGGCGCAAGAGTCGCGGCTGCTGGTCGTTCATCCTGCTCAAGAAGAACAAGAGGAAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

406

Amino Acids

45.39

Weight (kDa)

9.79

Isoelectric Point (pI)

47.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21390 AT1G76980 AT1G76980
fragaria_vesca	FvH4_2g15290 FvH4_2g15290 FvH4_2g15290 FvH4_2g15290
malus_domestica	MD05G1009200.v1.1 MD10G1007900.v1.1
prunus_persica	Prupe.8G011500_v2.0.a1
pyrus_communis	pycom05g00480 pycom10g00500
rosa_chinensis	RchiOBHm_Chr6g0278041
rosa_laevigata	RLG00000013246
rosa_multiflora	Rmu_co8365837.1_g000001 Rmu_sc0000791.1_g000012
rosa_roxburghii	Rroxscaffold_7G00190570
rosa_rugosa	Rorug06G0114200
rosa_samantha	Rh6AG224000 Rh6BG228100 Rh6CG230600 Rh6DG221500
rosa_wichuraiana	Rw6G019560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	329
AccII	CGCG	2 cut(s)	534, 1170
AciI	CCGC	5 cut(s)	327, 509, 532, 1110, 1170
AclWI	GGATC	1 cut(s)	1003
AcsI	RAATTY	2 cut(s)	254, 742
AcyI	GRCGYC	2 cut(s)	330, 453
AfaI	GTAC	1 cut(s)	736
AgsI	TTSAA	3 cut(s)	169, 322, 859
AjnI	CCWGG	2 cut(s)	151, 261
AloI	GAACNNNNNNTCC	2 cut(s)	297, 329
AluBI	AGCT	2 cut(s)	601, 643
AluI	AGCT	2 cut(s)	601, 643
Alw26I	GTCTC	1 cut(s)	975
AlwI	GGATC	1 cut(s)	1003
Ama87I	CYCGRG	2 cut(s)	396, 626
AoxI	GGCC	1 cut(s)	378
ApeKI	GCWGC	7 cut(s)	482, 1107, 1113, 1122, 1125, 1140, 1173
ApoI	RAATTY	2 cut(s)	254, 742
AspLEI	GCGC	2 cut(s)	332, 1161
AspS9I	GGNCC	1 cut(s)	284
AsuC2I	CCSGG	2 cut(s)	397, 398
AsuHPI	GGTGA	4 cut(s)	139, 625, 701, 829
AvaI	CYCGRG	2 cut(s)	396, 626
AvaII	GGWCC	1 cut(s)	284
AxyI	CCTNAGG	1 cut(s)	981
BaeI	ACNNNNGTAYC	2 cut(s)	442, 475
BanI	GGYRCC	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	403
BbsI	GAAGAC	1 cut(s)	527
BbvI	GCAGC	7 cut(s)	469, 1119, 1125, 1134, 1137, 1152, 1160
BccI	CCATC	6 cut(s)	235, 598, 604, 751, 856, 986
BceAI	ACGGC	4 cut(s)	340, 365, 496, 616
BciT130I	CCWGG	2 cut(s)	153, 263
BclI	TGATCA	1 cut(s)	750
BcnI	CCSGG	2 cut(s)	397, 398
BcoDI	GTCTC	1 cut(s)	975
BfaI	CTAG	1 cut(s)	1080
BfmI	CTRYAG	1 cut(s)	430
BfoI	RGCGCY	1 cut(s)	333
BglII	AGATCT	1 cut(s)	655
BmcAI	AGTACT	1 cut(s)	736
Bme1390I	CCNGG	4 cut(s)	153, 263, 397, 398
Bme18I	GGWCC	1 cut(s)	284
BmeT110I	CYCGRG	2 cut(s)	396, 626
BmgT120I	GGNCC	1 cut(s)	284
BmiI	GGNNCC	2 cut(s)	286, 331
BmrFI	CCNGG	4 cut(s)	153, 263, 397, 398
BmsI	GCATC	1 cut(s)	1092
BpiI	GAAGAC	1 cut(s)	527
BplI	GAGNNNNNCTC	2 cut(s)	488, 520
BpuEI	CTTGAG	1 cut(s)	1178
BpuMI	CCSGG	2 cut(s)	397, 398
BsaBI	GATNNNNATC	1 cut(s)	705
BsaHI	GRCGYC	2 cut(s)	330, 453
BsaJI	CCNNGG	2 cut(s)	261, 396
BsaWI	WCCGGW	1 cut(s)	546
BsaXI	ACNNNNNCTCC	6 cut(s)	817, 847, 999, 1029, 1054, 1084
Bse21I	CCTNAGG	1 cut(s)	981
Bse8I	GATNNNNATC	1 cut(s)	705
BseBI	CCWGG	2 cut(s)	153, 263
BseDI	CCNNGG	2 cut(s)	261, 396
BseGI	GGATG	4 cut(s)	80, 762, 997, 1185
BseJI	GATNNNNATC	1 cut(s)	705
BseMII	CTCAG	3 cut(s)	416, 729, 995
BseRI	GAGGAG	1 cut(s)	838
BseXI	GCAGC	7 cut(s)	469, 1119, 1125, 1134, 1137, 1152, 1160
BseYI	CCCAGC	2 cut(s)	87, 137
Bsh1236I	CGCG	2 cut(s)	534, 1170
BshFI	GGCC	1 cut(s)	380
BshNI	GGYRCC	1 cut(s)	329
BsiHKCI	CYCGRG	2 cut(s)	396, 626
BsiSI	CCGG	2 cut(s)	397, 547
BslFI	GGGAC	2 cut(s)	270, 365
BsmAI	GTCTC	1 cut(s)	975
BsmFI	GGGAC	2 cut(s)	270, 365
BsnI	GGCC	1 cut(s)	380
BsoBI	CYCGRG	2 cut(s)	396, 626
Bsp1286I	GDGCHC	1 cut(s)	403
Bsp143I	GATC	5 cut(s)	655, 700, 706, 750, 995
BspACI	CCGC	5 cut(s)	327, 509, 532, 1110, 1170
BspANI	GGCC	1 cut(s)	380
BspCNI	CTCAG	3 cut(s)	415, 730, 994
BspFNI	CGCG	2 cut(s)	534, 1170
BspLI	GGNNCC	2 cut(s)	286, 331
BspPI	GGATC	1 cut(s)	1003
BspT107I	GGYRCC	1 cut(s)	329
BssECI	CCNNGG	2 cut(s)	261, 396
BssMI	GATC	5 cut(s)	655, 700, 706, 750, 995
BssNI	GRCGYC	2 cut(s)	330, 453
Bst2UI	CCWGG	2 cut(s)	153, 263
Bst6I	CTCTTC	2 cut(s)	323, 1034
BstACI	GRCGYC	2 cut(s)	330, 453
BstAPI	GCANNNNNTGC	2 cut(s)	162, 938
BstC8I	GCNNGC	3 cut(s)	378, 576, 1157
BstDEI	CTNAG	3 cut(s)	402, 738, 981
BstF5I	GGATG	4 cut(s)	80, 762, 997, 1185
BstFNI	CGCG	2 cut(s)	534, 1170
BstH2I	RGCGCY	1 cut(s)	333
BstHHI	GCGC	2 cut(s)	332, 1161
BstKTI	GATC	5 cut(s)	658, 703, 709, 753, 998
BstMAI	GTCTC	1 cut(s)	975
BstMBI	GATC	5 cut(s)	655, 700, 706, 750, 995
BstMWI	GCNNNNNNNGC	9 cut(s)	162, 398, 938, 1104, 1113, 1119, 1122, 1146, 1167
BstNI	CCWGG	2 cut(s)	153, 263
BstNSI	RCATGY	1 cut(s)	625
BstSCI	CCNGG	4 cut(s)	151, 261, 395, 396
BstSFI	CTRYAG	1 cut(s)	430
BstUI	CGCG	2 cut(s)	534, 1170
BstV1I	GCAGC	7 cut(s)	469, 1119, 1125, 1134, 1137, 1152, 1160
BstV2I	GAAGAC	1 cut(s)	527
BstX2I	RGATCY	2 cut(s)	655, 995
BstXI	CCANNNNNNTGG	1 cut(s)	152
BstYI	RGATCY	2 cut(s)	655, 995
Bsu36I	CCTNAGG	1 cut(s)	981
BsuRI	GGCC	1 cut(s)	380
BtsCI	GGATG	4 cut(s)	80, 762, 997, 1185
BtsI	GCAGTG	1 cut(s)	939
BtsIMutI	CAGTG	2 cut(s)	647, 939
Cac8I	GCNNGC	3 cut(s)	378, 576, 1157
CfoI	GCGC	2 cut(s)	332, 1161
Cfr13I	GGNCC	1 cut(s)	284
Cfr9I	CCCGGG	1 cut(s)	396
CseI	GACGC	1 cut(s)	461
Csp6I	GTAC	1 cut(s)	735
CviAII	CATG	6 cut(s)	6, 277, 302, 448, 622, 1099
CviJI	RGCY	7 cut(s)	380, 401, 601, 631, 643, 979, 1173
CviKI_1	RGCY	7 cut(s)	380, 401, 601, 631, 643, 979, 1173
CviQI	GTAC	1 cut(s)	735
DdeI	CTNAG	3 cut(s)	402, 738, 981
DinI	GGCGCC	1 cut(s)	331
DpnI	GATC	5 cut(s)	657, 702, 708, 752, 997
DpnII	GATC	5 cut(s)	655, 700, 706, 750, 995
Eam1104I	CTCTTC	2 cut(s)	323, 1034
EarI	CTCTTC	2 cut(s)	323, 1034
Eco24I	GRGCYC	1 cut(s)	403
Eco47I	GGWCC	1 cut(s)	284
Eco81I	CCTNAGG	1 cut(s)	981
Eco88I	CYCGRG	2 cut(s)	396, 626
EcoRII	CCWGG	2 cut(s)	151, 261
EcoT38I	GRGCYC	1 cut(s)	403
EgeI	GGCGCC	1 cut(s)	331
EheI	GGCGCC	1 cut(s)	331
FaeI	CATG	6 cut(s)	9, 280, 305, 451, 625, 1102
FaqI	GGGAC	2 cut(s)	270, 365
FatI	CATG	6 cut(s)	5, 276, 301, 447, 621, 1098
FbaI	TGATCA	1 cut(s)	750
FokI	GGATG	4 cut(s)	67, 769, 1004, 1172
FriOI	GRGCYC	1 cut(s)	403
FspBI	CTAG	1 cut(s)	1080
GlaI	GCGC	2 cut(s)	331, 1160
GsaI	CCCAGC	2 cut(s)	91, 141
HaeII	RGCGCY	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	380
HapII	CCGG	2 cut(s)	397, 547
HgaI	GACGC	1 cut(s)	461
HhaI	GCGC	2 cut(s)	332, 1161
Hin1I	GRCGYC	2 cut(s)	330, 453
Hin1II	CATG	6 cut(s)	9, 280, 305, 451, 625, 1102
Hin6I	GCGC	2 cut(s)	330, 1159
HinP1I	GCGC	2 cut(s)	330, 1159
HinfI	GANTC	5 cut(s)	368, 497, 503, 550, 1165
HpaII	CCGG	2 cut(s)	397, 547
HphI	GGTGA	4 cut(s)	139, 625, 701, 829
Hpy166II	GTNNAC	2 cut(s)	538, 781
Hpy188I	TCNGA	3 cut(s)	405, 502, 1057
Hpy188III	TCNNGA	5 cut(s)	567, 704, 710, 754, 1195
Hpy8I	GTNNAC	2 cut(s)	538, 781
Hpy99I	CGWCG	4 cut(s)	338, 470, 529, 665
HpyAV	CCTTC	6 cut(s)	206, 247, 910, 958, 997, 1204
HpyCH4IV	ACGT	1 cut(s)	465
HpyCH4V	TGCA	2 cut(s)	425, 941
HpyF10VI	GCNNNNNNNGC	9 cut(s)	162, 398, 938, 1104, 1113, 1119, 1122, 1146, 1167
HpyF3I	CTNAG	3 cut(s)	402, 738, 981
HpySE526I	ACGT	1 cut(s)	465
Hsp92I	GRCGYC	2 cut(s)	330, 453
Hsp92II	CATG	6 cut(s)	9, 280, 305, 451, 625, 1102
HspAI	GCGC	2 cut(s)	330, 1159
KasI	GGCGCC	1 cut(s)	329
Ksp22I	TGATCA	1 cut(s)	750
Kzo9I	GATC	5 cut(s)	655, 700, 706, 750, 995
LmnI	GCTCC	3 cut(s)	598, 1062, 1095
Lsp1109I	GCAGC	7 cut(s)	469, 1119, 1125, 1134, 1137, 1152, 1160
LweI	GCATC	1 cut(s)	1092
MaeI	CTAG	1 cut(s)	1080
MaeII	ACGT	1 cut(s)	465
MalI	GATC	5 cut(s)	657, 702, 708, 752, 997
MboI	GATC	5 cut(s)	655, 700, 706, 750, 995
MflI	RGATCY	2 cut(s)	655, 995
MhlI	GDGCHC	1 cut(s)	403
MluCI	AATT	6 cut(s)	254, 342, 385, 418, 742, 873
Mly113I	GGCGCC	1 cut(s)	330
MlyI	GAGTC	4 cut(s)	497, 506, 559, 1174
MmeI	TCCRAC	1 cut(s)	419
MnlI	CCTC	9 cut(s)	54, 259, 326, 581, 588, 706, 816, 990, 1200
MseI	TTAA	2 cut(s)	345, 909
MslI	CAYNNNNRTG	1 cut(s)	10
MspA1I	CMGCKG	1 cut(s)	1110
MspI	CCGG	2 cut(s)	397, 547
MspR9I	CCNGG	4 cut(s)	153, 263, 397, 398
MvaI	CCWGG	2 cut(s)	153, 263
MvnI	CGCG	2 cut(s)	534, 1170
MwoI	GCNNNNNNNGC	9 cut(s)	162, 398, 938, 1104, 1113, 1119, 1122, 1146, 1167
NarI	GGCGCC	1 cut(s)	330
NciI	CCSGG	2 cut(s)	397, 398
NdeII	GATC	5 cut(s)	655, 700, 706, 750, 995
NlaIII	CATG	6 cut(s)	9, 280, 305, 451, 625, 1102
NlaIV	GGNNCC	2 cut(s)	286, 331
NspI	RCATGY	1 cut(s)	625
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PfeI	GAWTC	1 cut(s)	368
PleI	GAGTC	4 cut(s)	497, 505, 558, 1173
PluTI	GGCGCC	1 cut(s)	333
PpsI	GAGTC	4 cut(s)	497, 505, 558, 1173
Psp6I	CCWGG	2 cut(s)	151, 261
PspFI	CCCAGC	2 cut(s)	87, 137
PspGI	CCWGG	2 cut(s)	151, 261
PspN4I	GGNNCC	2 cut(s)	286, 331
PspPI	GGNCC	1 cut(s)	284
PsuI	RGATCY	2 cut(s)	655, 995
RsaI	GTAC	1 cut(s)	736
RsaNI	GTAC	1 cut(s)	735
RseI	CAYNNNNRTG	1 cut(s)	10
SaqAI	TTAA	2 cut(s)	345, 909
Sau3AI	GATC	5 cut(s)	655, 700, 706, 750, 995
Sau96I	GGNCC	1 cut(s)	284
ScaI	AGTACT	1 cut(s)	736
SchI	GAGTC	4 cut(s)	497, 506, 559, 1174
ScrFI	CCNGG	4 cut(s)	153, 263, 397, 398
SduI	GDGCHC	1 cut(s)	403
SetI	ASST	7 cut(s)	75, 154, 365, 468, 603, 645, 969
SfaNI	GCATC	1 cut(s)	1092
SfcI	CTRYAG	1 cut(s)	430
SfoI	GGCGCC	1 cut(s)	331
SinI	GGWCC	1 cut(s)	284
SmaI	CCCGGG	1 cut(s)	398
SmiMI	CAYNNNNRTG	1 cut(s)	10
SmlI	CTYRAG	1 cut(s)	1193
SmoI	CTYRAG	1 cut(s)	1193
Sse9I	AATT	6 cut(s)	254, 342, 385, 418, 742, 873
SsiI	CCGC	5 cut(s)	327, 509, 532, 1110, 1170
SspDI	GGCGCC	1 cut(s)	329
SspI	AATATT	1 cut(s)	20
SspMI	CTAG	1 cut(s)	1080
StyD4I	CCNGG	4 cut(s)	151, 261, 395, 396
TaiI	ACGT	1 cut(s)	468
TaqI	TCGA	4 cut(s)	468, 566, 663, 703
TasI	AATT	6 cut(s)	254, 342, 385, 418, 742, 873
TatI	WGTACW	1 cut(s)	734
TauI	GCSGC	4 cut(s)	330, 511, 1113, 1173
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	2 cut(s)	345, 909
Tru9I	TTAA	2 cut(s)	345, 909
TscAI	CASTG	2 cut(s)	654, 939
TseI	GCWGC	7 cut(s)	482, 1107, 1113, 1122, 1125, 1140, 1173
TspDTI	ATGAA	5 cut(s)	318, 1038, 1052, 1115, 1174
TspGWI	ACGGA	1 cut(s)	786
TspMI	CCCGGG	1 cut(s)	396
TspRI	CASTG	2 cut(s)	654, 939
VpaK11BI	GGWCC	1 cut(s)	284
XapI	RAATTY	2 cut(s)	254, 742
XceI	RCATGY	1 cut(s)	625
XmaI	CCCGGG	1 cut(s)	396
XspI	CTAG	1 cut(s)	1080
ZrmI	AGTACT	1 cut(s)	736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.