Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008118

Physical Location & Seq

Genomic Coordinates Reverse (-)

684363 .. 692000

Gene Structure 7638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGATAGAGAACAAGATGAATTGCAATTTCTTGGGATTTTTGGCATCTACAAAGAAGCCTACAAAATAGTATTTTCACGGAGAAAAATCTTCAGCCAAATTACATTAGCCTTGATCCTCCCTTTGAGCATCGTATTCTTGGCGCACATAGCACTCTCAAACATCATTCTCTCAAAGATCATCCACAACGAAATATTCCTTGATGGAACAAGCACCAACAATCCAAGGTATGAAAAAATATCAGATGTCATATCCTCCGAGTGGGCAACGTATTGGCTTTTCAATGCTGCATACTTCACCTTCGTGCTCATCTTCAGCCTCCTCTCCACCTCTGCCGTTGTATACACGATCGCATGTATATACACAGCGCGAGAAATCACCTTCAAGAAGGTGATGAGCGTAGTCCCGAAAGTGTGGAAGCCAGTTATGGTCACGTTCTTGTGCACTTTCATGGCTTTTTTTTGTTACAACATAGTGGCTTTATTAGTCCTAATCATTTGGGTACTTTCGATGGGCATCAGTGGTGCCAGTGTTATAATTGGGTTTTTACTACTCATTGTTTACTTCATAGGGTTTGTTTACCTAACCCTAATCTGGCAACTGGCTAGCTGTGGTCTCGGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

209

Amino Acids

23.64

Weight (kDa)

8.64

Isoelectric Point (pI)

30.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008118)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15070
malus_domestica	MD05G1011000.v1.1 MD10G1010500.v1.1 MD10G1010700.v1.1
prunus_persica	Prupe.8G014200_v2.0.a1
pyrus_communis	pycom05g00620 pycom10g00680
rosa_chinensis	RchiOBHm_Chr6g0277711 RchiOBHm_Chr6g0277721
rosa_laevigata	RLG00000013280 RLG00000013281
rosa_multiflora	Rmu_sc0007109.1_g000007 Rmu_sc0007109.1_g000008 Rmu_sc0007109.1_g000012
rosa_roxburghii	Rroxscaffold_7G00191010 Rroxscaffold_7G00191030
rosa_rugosa	Rorug06G0110500 Rorug06G0110500
rosa_samantha	Rh6BG225000 Rh6CG227400 Rh6DG218100 Rh6DG218200
rosa_wichuraiana	Rw6G019360 Rw6G019370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	536
AccB1I	GGYRCC	1 cut(s)	524
AccI	GTMKAC	1 cut(s)	342
AccII	CGCG	1 cut(s)	370
AclWI	GGATC	1 cut(s)	109
AcuI	CTGAAG	2 cut(s)	76, 298
AfaI	GTAC	1 cut(s)	504
AfiI	CCNNNNNNNGG	2 cut(s)	261, 594
AgsI	TTSAA	2 cut(s)	283, 385
AleI	CACNNNNGTG	1 cut(s)	302
AluBI	AGCT	1 cut(s)	609
AluI	AGCT	1 cut(s)	609
Alw21I	GWGCWC	2 cut(s)	309, 446
Alw26I	GTCTC	1 cut(s)	620
Alw44I	GTGCAC	1 cut(s)	442
AlwI	GGATC	1 cut(s)	109
ApaLI	GTGCAC	1 cut(s)	442
ApeKI	GCWGC	1 cut(s)	287
AspLEI	GCGC	2 cut(s)	145, 370
AsuHPI	GGTGA	3 cut(s)	289, 370, 403
AsuNHI	GCTAGC	1 cut(s)	605
BaeGI	GKGCMC	1 cut(s)	446
BanI	GGYRCC	1 cut(s)	524
Bbv12I	GWGCWC	2 cut(s)	309, 446
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	2 cut(s)	197, 505
BceAI	ACGGC	1 cut(s)	320
BcoDI	GTCTC	1 cut(s)	620
BfaI	CTAG	1 cut(s)	606
BisI	GCNGC	1 cut(s)	288
BlsI	GCNGC	1 cut(s)	289
BmiI	GGNNCC	1 cut(s)	526
BmsI	GCATC	3 cut(s)	54, 138, 525
BmtI	GCTAGC	1 cut(s)	609
BsaBI	GATNNNNATC	1 cut(s)	515
BsaI	GGTCTC	1 cut(s)	620
BsaJI	CCNNGG	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 594
Bse1I	ACTGG	3 cut(s)	422, 528, 606
Bse8I	GATNNNNATC	1 cut(s)	515
BseDI	CCNNGG	1 cut(s)	224
BseGI	GGATG	1 cut(s)	180
BseJI	GATNNNNATC	1 cut(s)	515
BseLI	CCNNNNNNNGG	2 cut(s)	261, 594
BseNI	ACTGG	3 cut(s)	422, 528, 606
BseRI	GAGGAG	1 cut(s)	311
BseSI	GKGCMC	1 cut(s)	446
BseXI	GCAGC	1 cut(s)	274
Bsh1236I	CGCG	1 cut(s)	370
Bsh1285I	CGRYCG	1 cut(s)	351
BshNI	GGYRCC	1 cut(s)	524
BsiEI	CGRYCG	1 cut(s)	351
BsiHKAI	GWGCWC	2 cut(s)	309, 446
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	2 cut(s)	261, 594
BsmAI	GTCTC	1 cut(s)	620
BsmFI	GGGAC	1 cut(s)	389
Bso31I	GGTCTC	1 cut(s)	620
Bsp1286I	GDGCHC	2 cut(s)	309, 446
Bsp143I	GATC	3 cut(s)	114, 177, 348
BspFNI	CGCG	1 cut(s)	370
BspLI	GGNNCC	1 cut(s)	526
BspOI	GCTAGC	1 cut(s)	609
BspPI	GGATC	1 cut(s)	109
BspT107I	GGYRCC	1 cut(s)	524
BspTNI	GGTCTC	1 cut(s)	620
BsrI	ACTGG	3 cut(s)	422, 528, 606
BssECI	CCNNGG	1 cut(s)	224
BssMI	GATC	3 cut(s)	114, 177, 348
BssNAI	GTATAC	1 cut(s)	343
BssT1I	CCWWGG	1 cut(s)	224
Bst1107I	GTATAC	1 cut(s)	343
BstC8I	GCNNGC	1 cut(s)	607
BstF5I	GGATG	1 cut(s)	180
BstFNI	CGCG	1 cut(s)	370
BstHHI	GCGC	2 cut(s)	145, 370
BstKTI	GATC	3 cut(s)	117, 180, 351
BstMAI	GTCTC	1 cut(s)	620
BstMBI	GATC	3 cut(s)	114, 177, 348
BstMCI	CGRYCG	1 cut(s)	351
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNSI	RCATGY	1 cut(s)	357
BstSLI	GKGCMC	1 cut(s)	446
BstUI	CGCG	1 cut(s)	370
BstV1I	GCAGC	1 cut(s)	274
BstZ17I	GTATAC	1 cut(s)	343
BtsCI	GGATG	1 cut(s)	180
BtsIMutI	CAGTG	2 cut(s)	526, 535
Cac8I	GCNNGC	1 cut(s)	607
CfoI	GCGC	2 cut(s)	145, 370
Csp6I	GTAC	1 cut(s)	503
CviAII	CATG	2 cut(s)	354, 451
CviQI	GTAC	1 cut(s)	503
DpnI	GATC	3 cut(s)	116, 179, 350
DpnII	GATC	3 cut(s)	114, 177, 348
Eco130I	CCWWGG	1 cut(s)	224
Eco31I	GGTCTC	1 cut(s)	620
Eco57I	CTGAAG	2 cut(s)	76, 298
EcoT14I	CCWWGG	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	224
FaeI	CATG	2 cut(s)	357, 454
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	2 cut(s)	353, 450
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	1 cut(s)	288
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	1 cut(s)	288
FspBI	CTAG	1 cut(s)	606
GlaI	GCGC	2 cut(s)	144, 369
GluI	GCNGC	1 cut(s)	288
HhaI	GCGC	2 cut(s)	145, 370
Hin1II	CATG	2 cut(s)	357, 454
Hin6I	GCGC	2 cut(s)	143, 368
HinP1I	GCGC	2 cut(s)	143, 368
HphI	GGTGA	3 cut(s)	289, 370, 403
Hpy166II	GTNNAC	4 cut(s)	343, 444, 562, 580
Hpy188I	TCNGA	2 cut(s)	244, 259
Hpy188III	TCNNGA	3 cut(s)	385, 406, 624
Hpy8I	GTNNAC	4 cut(s)	343, 444, 562, 580
HpyAV	CCTTC	3 cut(s)	310, 382, 391
HpyCH4IV	ACGT	2 cut(s)	269, 434
HpyCH4V	TGCA	3 cut(s)	25, 290, 444
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpySE526I	ACGT	2 cut(s)	269, 434
Hsp92II	CATG	2 cut(s)	357, 454
HspAI	GCGC	2 cut(s)	143, 368
Kzo9I	GATC	3 cut(s)	114, 177, 348
LpnPI	CCDG	4 cut(s)	435, 541, 580, 587
Lsp1109I	GCAGC	1 cut(s)	274
LweI	GCATC	3 cut(s)	54, 138, 525
MaeI	CTAG	1 cut(s)	606
MaeII	ACGT	2 cut(s)	269, 434
MaeIII	GTNAC	2 cut(s)	430, 464
MalI	GATC	3 cut(s)	116, 179, 350
MboI	GATC	3 cut(s)	114, 177, 348
MboII	GAAGA	2 cut(s)	82, 304
MhlI	GDGCHC	2 cut(s)	309, 446
MluCI	AATT	4 cut(s)	20, 26, 99, 537
MnlI	CCTC	5 cut(s)	128, 265, 329, 332, 340
MslI	CAYNNNNRTG	2 cut(s)	302, 449
MvnI	CGCG	1 cut(s)	370
MwoI	GCNNNNNNNGC	1 cut(s)	149
NdeII	GATC	3 cut(s)	114, 177, 348
NheI	GCTAGC	1 cut(s)	605
NlaIII	CATG	2 cut(s)	357, 454
NlaIV	GGNNCC	1 cut(s)	526
NmuCI	GTSAC	1 cut(s)	430
NspI	RCATGY	1 cut(s)	357
OliI	CACNNNNGTG	1 cut(s)	302
PkrI	GCNGC	1 cut(s)	289
Ple19I	CGATCG	1 cut(s)	351
PsiI	TTATAA	1 cut(s)	536
PspN4I	GGNNCC	1 cut(s)	526
PvuI	CGATCG	1 cut(s)	351
RsaI	GTAC	1 cut(s)	504
RsaNI	GTAC	1 cut(s)	503
RseI	CAYNNNNRTG	2 cut(s)	302, 449
SatI	GCNGC	1 cut(s)	288
Sau3AI	GATC	3 cut(s)	114, 177, 348
SduI	GDGCHC	2 cut(s)	309, 446
SetI	ASST	9 cut(s)	230, 272, 302, 332, 383, 393, 437, 585, 611
SfaNI	GCATC	3 cut(s)	54, 138, 525
SmiMI	CAYNNNNRTG	2 cut(s)	302, 449
Sse9I	AATT	4 cut(s)	20, 26, 99, 537
SspI	AATATT	1 cut(s)	195
SspMI	CTAG	1 cut(s)	606
StyI	CCWWGG	1 cut(s)	224
TaiI	ACGT	2 cut(s)	272, 437
TaqI	TCGA	1 cut(s)	509
TasI	AATT	4 cut(s)	20, 26, 99, 537
TscAI	CASTG	2 cut(s)	526, 535
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	1 cut(s)	287
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	4 cut(s)	33, 246, 439, 556
TspGWI	ACGGA	1 cut(s)	94
TspRI	CASTG	2 cut(s)	526, 535
VneI	GTGCAC	1 cut(s)	442
XceI	RCATGY	1 cut(s)	357
XmiI	GTMKAC	1 cut(s)	342
XspI	CTAG	1 cut(s)	606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.