Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002403

Physical Location & Seq

Genomic Coordinates Reverse (-)

4150736 .. 4152020

Gene Structure 1285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGCACCTACCGTGACTTCAGTGTATGCATCTGAACCCAAGGTAGCAAGCATCAAAACCTTAGCCGACTCAGATGCTCTCACTTTTGTACCTTCCGAGTACGCCTACATCATGGATCCCAACGATAAGGGAAATGCAAACGACCCTGAACACTCAATCCCCATCATTGATTTTGCACTTCTCACCTCTGCCTCCCCAGATGAACGGGCACAAATGATCGAGAAGCTAGGAAAAGCTTGCCAAGAATGGGGCTTCTTTCAGGTGATCAACCACGGTGTACCAGAGAGCCTGATGAAAGAAATGATCGACGCGTGCCGAAGATTTTTTGAGCTGCCGGAAGAGGAGAAGAAGGAGTTCCATACAAAGAACCTGTTGGACCCAATCAAGTGCGGCACCAGCTTCAACGTCGCAATTGACAAAGTTCGTCTCTGGAGGGATTATCTCAAGGTCATCGCACACCCCAAATTCAACTCACTCTACAAACCTGCTGGGTACAGTGAAATTTCATTGGAGTTCAGCAAAAGAACCCGTGCAGTGGCAACCGAAATATTGAATGGGATATCGGAGAGTTTGGGACTGGAGGCCGATTACATTACCAAGGTCATGAACTGGGATCGGGGCTGCCAAATTCTTGCCGCGAACTACTACCCGGCTTGCCCACAGCCCGACCTGGCAATCGGTATTCCTCCTCATACAGATCATGGACTGGTGACCCTCCTCATTCAGAATGATATGTGTGGCCTTGAAGTCAAGCACAATGATCAGTGGGTCTTGGTGAATGCCACTCCGGGCGCCTTTATTGTTAACGTTGGTGATCAAATGCAAATTCTAACAAACGGCAAGTACAAGAGCATATGGCATCGAGCAACTGTGAACAACACAGCTACTAGAATATCGATCGCTGTACCACATGGACCGGCACTCGATACGCCCACCGTACCGATCCCAGAGTTGCTAGAAAAGGAAGGTGAAAAAGCGAAGTACATTGGAATGACGTATGAGAAATTCATGGAACTTCAGGCAAGCCCCGCTGCCTACATGATGCCTTGCTTGGATCACCTGCGGGTCAAGGACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

360

Amino Acids

40.1

Weight (kDa)

5.43

Isoelectric Point (pI)

34.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	53 - 158	1.2e-28	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	209 - 304	2.9e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002403)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g38040 FvH4_5g38040 FvH4_5g38050
malus_domestica	MD05G1046000.v1.1 MD10G1052800.v1.1 MD10G1053000.v1.1 MD10G1053100.v1.1 MD10G1053200.v1.1
prunus_persica	Prupe.8G066500_v2.0.a1 Prupe.8G066600_v2.0.a1 Prupe.8G066600_v2.0.a1
pyrus_communis	pycom05g03830 pycom10g03780 pycom10g03830 pycom10g03910 pycom10g04020
rosa_chinensis	RchiOBHm_Chr6g0265671 RchiOBHm_Chr7g0239961 RchiOBHm_Chr7g0239991
rosa_laevigata	RLG00000000713 RLG00000000714 RLG00000014168
rosa_multiflora	Rmu_co8141760.1_g000001 Rmu_sc0000540.1_g000014 Rmu_sc0000540.1_g000017 Rmu_sc0006825.1_g000004
rosa_roxburghii	Rroxscaffold_3G00220550 Rroxscaffold_3G00220590
rosa_rugosa	Rorug06G0018400 Rorug07G0331500
rosa_samantha	Rh6BG140400 Rh6CG137300 Rh6DG123800 Rh7AG485400 Rh7AG485500 Rh7BG458200 Rh7BG458300 Rh7CG502500 Rh7CG502700 Rh7DG470900 Rh7DG471000
rosa_wichuraiana	Rw7G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1068
Acc36I	ACCTGC	2 cut(s)	493, 1068
AccB1I	GGYRCC	3 cut(s)	4, 392, 791
AccII	CGCG	2 cut(s)	311, 638
AciI	CCGC	4 cut(s)	390, 636, 1029, 1063
AclI	AACGTT	1 cut(s)	807
AclWI	GGATC	5 cut(s)	110, 123, 621, 937, 1062
AcsI	RAATTY	5 cut(s)	464, 501, 627, 825, 1004
AcuI	CTGAAG	1 cut(s)	1001
AcyI	GRCGYC	1 cut(s)	792
AfaI	GTAC	8 cut(s)	90, 101, 279, 494, 845, 906, 939, 983
AfiI	CCNNNNNNNGG	2 cut(s)	247, 535
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	4 cut(s)	403, 469, 553, 746
AjnI	CCWGG	1 cut(s)	669
AloI	GAACNNNNNNTCC	2 cut(s)	141, 173
AluBI	AGCT	5 cut(s)	226, 236, 331, 399, 884
AluI	AGCT	5 cut(s)	226, 236, 331, 399, 884
Alw26I	GTCTC	1 cut(s)	431
AlwI	GGATC	5 cut(s)	110, 123, 621, 937, 1062
AoxI	GGCC	2 cut(s)	582, 739
ApeKI	GCWGC	3 cut(s)	331, 621, 1031
ApoI	RAATTY	5 cut(s)	464, 501, 627, 825, 1004
Asp700I	GAANNNNTTC	1 cut(s)	353
AspLEI	GCGC	1 cut(s)	794
AspS9I	GGNCC	2 cut(s)	376, 914
AsuC2I	CCSGG	2 cut(s)	650, 789
AsuHPI	GGTGA	7 cut(s)	175, 274, 721, 787, 824, 980, 1049
AvaII	GGWCC	2 cut(s)	376, 914
BaeGI	GKGCMC	1 cut(s)	211
BaeI	ACNNNNGTAYC	2 cut(s)	72, 105
BamHI	GGATCC	1 cut(s)	115
BanI	GGYRCC	3 cut(s)	4, 392, 791
BbvI	GCAGC	3 cut(s)	318, 608, 1018
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	1 cut(s)	853
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BciT130I	CCWGG	1 cut(s)	671
BclI	TGATCA	3 cut(s)	264, 760, 814
BcnI	CCSGG	2 cut(s)	650, 789
BcoDI	GTCTC	1 cut(s)	431
BfaI	CTAG	3 cut(s)	227, 888, 956
BfoI	RGCGCY	1 cut(s)	795
BfuAI	ACCTGC	2 cut(s)	493, 1068
BisI	GCNGC	5 cut(s)	332, 391, 622, 636, 1032
BlsI	GCNGC	5 cut(s)	333, 392, 623, 637, 1033
Bme1390I	CCNGG	3 cut(s)	650, 671, 789
Bme18I	GGWCC	2 cut(s)	376, 914
BmgT120I	GGNCC	2 cut(s)	376, 914
BmiI	GGNNCC	5 cut(s)	6, 117, 378, 394, 793
BmrFI	CCNGG	3 cut(s)	650, 671, 789
BmrI	ACTGGG	1 cut(s)	619
BmsI	GCATC	5 cut(s)	38, 60, 64, 868, 1032
BmuI	ACTGGG	1 cut(s)	619
BpmI	CTGGAG	2 cut(s)	451, 599
Bpu10I	CCTNAGC	1 cut(s)	61
BpuEI	CTTGAG	1 cut(s)	428
BpuMI	CCSGG	2 cut(s)	650, 789
Bsa29I	ATCGAT	1 cut(s)	896
BsaHI	GRCGYC	1 cut(s)	792
BsaJI	CCNNGG	3 cut(s)	39, 271, 597
Bsc4I	CCNNNNNNNGG	2 cut(s)	247, 535
Bse118I	RCCGGY	1 cut(s)	916
Bse1I	ACTGG	3 cut(s)	582, 614, 711
BseBI	CCWGG	1 cut(s)	671
BseCI	ATCGAT	1 cut(s)	896
BseDI	CCNNGG	3 cut(s)	39, 271, 597
BseLI	CCNNNNNNNGG	2 cut(s)	247, 535
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	3 cut(s)	582, 614, 711
BseRI	GAGGAG	3 cut(s)	356, 678, 707
BseSI	GKGCMC	1 cut(s)	211
BseXI	GCAGC	3 cut(s)	318, 608, 1018
BseYI	CCCAGC	1 cut(s)	488
BsgI	GTGCAG	1 cut(s)	552
Bsh1236I	CGCG	2 cut(s)	311, 638
Bsh1285I	CGRYCG	1 cut(s)	900
BshFI	GGCC	2 cut(s)	584, 741
BshNI	GGYRCC	3 cut(s)	4, 392, 791
BshVI	ATCGAT	1 cut(s)	896
BsiEI	CGRYCG	1 cut(s)	900
BsiSI	CCGG	4 cut(s)	335, 650, 788, 917
BslFI	GGGAC	1 cut(s)	588
BslI	CCNNNNNNNGG	2 cut(s)	247, 535
BsmAI	GTCTC	1 cut(s)	431
BsmBI	CGTCTC	1 cut(s)	431
BsmFI	GGGAC	1 cut(s)	588
BsmI	GAATGC	1 cut(s)	784
BsnI	GGCC	2 cut(s)	584, 741
Bsp1286I	GDGCHC	1 cut(s)	211
BspACI	CCGC	4 cut(s)	390, 636, 1029, 1063
BspANI	GGCC	2 cut(s)	584, 741
BspCNI	CTCAG	1 cut(s)	83
BspDI	ATCGAT	1 cut(s)	896
BspFNI	CGCG	2 cut(s)	311, 638
BspHI	TCATGA	1 cut(s)	603
BspLI	GGNNCC	5 cut(s)	6, 117, 378, 394, 793
BspMI	ACCTGC	2 cut(s)	493, 1068
BspPI	GGATC	5 cut(s)	110, 123, 621, 937, 1062
BspT107I	GGYRCC	3 cut(s)	4, 392, 791
BsrFI	RCCGGY	1 cut(s)	916
BsrI	ACTGG	3 cut(s)	582, 614, 711
BssAI	RCCGGY	1 cut(s)	916
BssECI	CCNNGG	3 cut(s)	39, 271, 597
BssNI	GRCGYC	1 cut(s)	792
BssT1I	CCWWGG	2 cut(s)	39, 597
Bst2UI	CCWGG	1 cut(s)	671
Bst4CI	ACNGT	5 cut(s)	13, 275, 497, 871, 937
Bst6I	CTCTTC	1 cut(s)	333
BstACI	GRCGYC	1 cut(s)	792
BstC8I	GCNNGC	5 cut(s)	49, 238, 313, 655, 1024
BstDEI	CTNAG	2 cut(s)	61, 70
BstDSI	CCRYGG	1 cut(s)	271
BstEII	GGTNACC	1 cut(s)	709
BstFNI	CGCG	2 cut(s)	311, 638
BstH2I	RGCGCY	1 cut(s)	795
BstHHI	GCGC	1 cut(s)	794
BstMAI	GTCTC	1 cut(s)	431
BstMCI	CGRYCG	1 cut(s)	900
BstMWI	GCNNNNNNNGC	2 cut(s)	396, 1028
BstNI	CCWGG	1 cut(s)	671
BstPI	GGTNACC	1 cut(s)	709
BstSCI	CCNGG	3 cut(s)	648, 669, 787
BstSLI	GKGCMC	1 cut(s)	211
BstUI	CGCG	2 cut(s)	311, 638
BstV1I	GCAGC	3 cut(s)	318, 608, 1018
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
Bsu15I	ATCGAT	1 cut(s)	896
BsuRI	GGCC	2 cut(s)	584, 741
BsuTUI	ATCGAT	1 cut(s)	896
BtgI	CCRYGG	1 cut(s)	271
BtgZI	GCGATG	1 cut(s)	436
BtsI	GCAGTG	1 cut(s)	540
BtsIMutI	CAGTG	4 cut(s)	27, 502, 540, 770
BveI	ACCTGC	2 cut(s)	493, 1068
Cac8I	GCNNGC	5 cut(s)	49, 238, 313, 655, 1024
CciI	TCATGA	1 cut(s)	603
CfoI	GCGC	1 cut(s)	794
Cfr10I	RCCGGY	1 cut(s)	916
Cfr13I	GGNCC	2 cut(s)	376, 914
ClaI	ATCGAT	1 cut(s)	896
CseI	GACGC	1 cut(s)	317
Csp6I	GTAC	8 cut(s)	89, 100, 278, 493, 844, 905, 938, 982
CviAII	CATG	6 cut(s)	112, 604, 701, 911, 1009, 1039
CviQI	GTAC	8 cut(s)	89, 100, 278, 493, 844, 905, 938, 982
DdeI	CTNAG	2 cut(s)	61, 70
DinI	GGCGCC	1 cut(s)	793
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Eco130I	CCWWGG	2 cut(s)	39, 597
Eco32I	GATATC	1 cut(s)	561
Eco47I	GGWCC	2 cut(s)	376, 914
Eco57I	CTGAAG	1 cut(s)	1001
Eco91I	GGTNACC	1 cut(s)	709
EcoO65I	GGTNACC	1 cut(s)	709
EcoRII	CCWGG	1 cut(s)	669
EcoRV	GATATC	1 cut(s)	561
EcoT14I	CCWWGG	2 cut(s)	39, 597
EcoT22I	ATGCAT	1 cut(s)	31
EgeI	GGCGCC	1 cut(s)	793
EheI	GGCGCC	1 cut(s)	793
ErhI	CCWWGG	2 cut(s)	39, 597
Esp3I	CGTCTC	1 cut(s)	431
FaeI	CATG	6 cut(s)	115, 607, 704, 914, 1012, 1042
FaqI	GGGAC	1 cut(s)	588
FatI	CATG	6 cut(s)	111, 603, 700, 910, 1008, 1038
FauI	CCCGC	2 cut(s)	1036, 1056
FauNDI	CATATG	1 cut(s)	854
FbaI	TGATCA	3 cut(s)	264, 760, 814
Fnu4HI	GCNGC	5 cut(s)	332, 391, 622, 636, 1032
Fsp4HI	GCNGC	5 cut(s)	332, 391, 622, 636, 1032
FspBI	CTAG	3 cut(s)	227, 888, 956
GlaI	GCGC	1 cut(s)	793
GluI	GCNGC	5 cut(s)	332, 391, 622, 636, 1032
GsaI	CCCAGC	1 cut(s)	492
GsuI	CTGGAG	2 cut(s)	451, 599
HaeII	RGCGCY	1 cut(s)	795
HaeIII	GGCC	2 cut(s)	584, 741
HapII	CCGG	4 cut(s)	335, 650, 788, 917
HgaI	GACGC	1 cut(s)	317
HhaI	GCGC	1 cut(s)	794
Hin1I	GRCGYC	1 cut(s)	792
Hin1II	CATG	6 cut(s)	115, 607, 704, 914, 1012, 1042
Hin6I	GCGC	1 cut(s)	792
HinP1I	GCGC	1 cut(s)	792
HincII	GTYRAC	1 cut(s)	805
HindII	GTYRAC	1 cut(s)	805
HindIII	AAGCTT	1 cut(s)	234
HinfI	GANTC	1 cut(s)	68
HpaI	GTTAAC	1 cut(s)	805
HpaII	CCGG	4 cut(s)	335, 650, 788, 917
HphI	GGTGA	7 cut(s)	175, 274, 721, 787, 824, 980, 1049
Hpy166II	GTNNAC	3 cut(s)	278, 805, 874
Hpy188I	TCNGA	5 cut(s)	34, 73, 97, 565, 726
Hpy188III	TCNNGA	3 cut(s)	220, 430, 604
Hpy8I	GTNNAC	3 cut(s)	278, 805, 874
Hpy99I	CGWCG	2 cut(s)	311, 410
HpyAV	CCTTC	3 cut(s)	102, 343, 959
HpyCH4III	ACNGT	5 cut(s)	13, 275, 497, 871, 937
HpyCH4IV	ACGT	3 cut(s)	405, 807, 995
HpyCH4V	TGCA	5 cut(s)	29, 137, 176, 533, 823
HpyF10VI	GCNNNNNNNGC	2 cut(s)	396, 1028
HpyF3I	CTNAG	2 cut(s)	61, 70
HpySE526I	ACGT	3 cut(s)	405, 807, 995
Hsp92I	GRCGYC	1 cut(s)	792
Hsp92II	CATG	6 cut(s)	115, 607, 704, 914, 1012, 1042
HspAI	GCGC	1 cut(s)	792
KasI	GGCGCC	1 cut(s)	791
Ksp22I	TGATCA	3 cut(s)	264, 760, 814
KspAI	GTTAAC	1 cut(s)	805
Lsp1109I	GCAGC	3 cut(s)	318, 608, 1018
LweI	GCATC	5 cut(s)	38, 60, 64, 868, 1032
MaeI	CTAG	3 cut(s)	227, 888, 956
MaeII	ACGT	3 cut(s)	405, 807, 995
MaeIII	GTNAC	2 cut(s)	13, 709
MboII	GAAGA	3 cut(s)	330, 350, 358
MfeI	CAATTG	2 cut(s)	411, 1075
MflI	RGATCY	1 cut(s)	115
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	7 cut(s)	411, 464, 501, 627, 825, 1004, 1075
MluI	ACGCGT	1 cut(s)	309
Mly113I	GGCGCC	1 cut(s)	792
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	9 cut(s)	196, 202, 334, 426, 574, 696, 699, 725, 728
Mph1103I	ATGCAT	1 cut(s)	31
MroXI	GAANNNNTTC	1 cut(s)	353
MseI	TTAA	1 cut(s)	804
MslI	CAYNNNNRTG	1 cut(s)	989
MspA1I	CMGCKG	1 cut(s)	1031
MspI	CCGG	4 cut(s)	335, 650, 788, 917
MspR9I	CCNGG	3 cut(s)	650, 671, 789
MunI	CAATTG	2 cut(s)	411, 1075
Mva1269I	GAATGC	1 cut(s)	784
MvaI	CCWGG	1 cut(s)	671
MvnI	CGCG	2 cut(s)	311, 638
MwoI	GCNNNNNNNGC	2 cut(s)	396, 1028
NarI	GGCGCC	1 cut(s)	792
NciI	CCSGG	2 cut(s)	650, 789
NdeI	CATATG	1 cut(s)	854
NlaIII	CATG	6 cut(s)	115, 607, 704, 914, 1012, 1042
NlaIV	GGNNCC	5 cut(s)	6, 117, 378, 394, 793
NmuCI	GTSAC	2 cut(s)	13, 709
NsiI	ATGCAT	1 cut(s)	31
PagI	TCATGA	1 cut(s)	603
PaqCI	CACCTGC	1 cut(s)	1068
PctI	GAATGC	1 cut(s)	784
PdmI	GAANNNNTTC	1 cut(s)	353
PkrI	GCNGC	5 cut(s)	333, 392, 623, 637, 1033
Ple19I	CGATCG	1 cut(s)	900
PleI	GAGTC	1 cut(s)	62
PluTI	GGCGCC	1 cut(s)	795
PpsI	GAGTC	1 cut(s)	62
Psp1406I	AACGTT	1 cut(s)	807
Psp6I	CCWGG	1 cut(s)	669
PspEI	GGTNACC	1 cut(s)	709
PspFI	CCCAGC	1 cut(s)	488
PspGI	CCWGG	1 cut(s)	669
PspN4I	GGNNCC	5 cut(s)	6, 117, 378, 394, 793
PspPI	GGNCC	2 cut(s)	376, 914
PsuI	RGATCY	1 cut(s)	115
PvuI	CGATCG	1 cut(s)	900
RsaI	GTAC	8 cut(s)	90, 101, 279, 494, 845, 906, 939, 983
RsaNI	GTAC	8 cut(s)	89, 100, 278, 493, 844, 905, 938, 982
RseI	CAYNNNNRTG	1 cut(s)	989
SaqAI	TTAA	1 cut(s)	804
SatI	GCNGC	5 cut(s)	332, 391, 622, 636, 1032
Sau96I	GGNCC	2 cut(s)	376, 914
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	3 cut(s)	650, 671, 789
SduI	GDGCHC	1 cut(s)	211
SfaNI	GCATC	5 cut(s)	38, 60, 64, 868, 1032
SfoI	GGCGCC	1 cut(s)	793
SinI	GGWCC	2 cut(s)	376, 914
SmiMI	CAYNNNNRTG	1 cut(s)	989
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	7 cut(s)	411, 464, 501, 627, 825, 1004, 1075
SsiI	CCGC	4 cut(s)	390, 636, 1029, 1063
SspDI	GGCGCC	1 cut(s)	791
SspI	AATATT	1 cut(s)	549
SspMI	CTAG	3 cut(s)	227, 888, 956
StyD4I	CCNGG	3 cut(s)	648, 669, 787
StyI	CCWWGG	2 cut(s)	39, 597
TaaI	ACNGT	5 cut(s)	13, 275, 497, 871, 937
TaiI	ACGT	3 cut(s)	408, 810, 998
TaqI	TCGA	5 cut(s)	219, 306, 862, 896, 924
TasI	AATT	7 cut(s)	411, 464, 501, 627, 825, 1004, 1075
TatI	WGTACW	2 cut(s)	843, 981
TauI	GCSGC	2 cut(s)	393, 638
Tru1I	TTAA	1 cut(s)	804
Tru9I	TTAA	1 cut(s)	804
TscAI	CASTG	4 cut(s)	27, 502, 540, 770
TseFI	GTSAC	2 cut(s)	13, 709
TseI	GCWGC	3 cut(s)	331, 621, 1031
Tsp45I	GTSAC	2 cut(s)	13, 709
TspDTI	ATGAA	5 cut(s)	216, 308, 495, 620, 997
TspRI	CASTG	4 cut(s)	27, 502, 540, 770
VpaK11BI	GGWCC	2 cut(s)	376, 914
XapI	RAATTY	5 cut(s)	464, 501, 627, 825, 1004
XmnI	GAANNNNTTC	1 cut(s)	353
XspI	CTAG	3 cut(s)	227, 888, 956
Zsp2I	ATGCAT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.