Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002403

Physical Location & Seq

Genomic Coordinates Forward (+)

4248141 .. 4249291

Gene Structure 1151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGGGCTTTTTTCAGCGATCAACCATGGTGTACCAGAGAGCCTGATGAAAGAAATGATCGACGCGTGCCAAAGATTTTTTGAGCTGCCGGAGGAGGAGAAGAAGGAGTTCCATACAAAGAACCTGTTGGACCCAATCAAGTGCGGCACCAGCTTCAACGTTGCAATTGACAAAGTTCGTCTTTGGAGGGATTATCTCAAGGTCATCGCACACCCCAAATTCAACTCACTCTACAAACCTGCTGGGTACAGTGAAGTTTCATTAGAGTTCAGCAAAAGAACCCGTGTAGTAGCAACCGAAATATTGAATCGAATATCAGAGAGTTTGGGATTGGAGCCCGATTACATTGCAAAGGCCATGAACTGGGATCGCGACTGGCAAATTCTGGCAGCGAACTACTACCCGGCTTGCCCACAGCCTGACCTGGCAATCGGTATTCCTCCTCATACAGATCATGGACTGGTGACGCTCCTGATTCAAAATGATATGTGTGGCCTTGAAGTCAAGCACAATGATCAGTGGGTCTTGGTGAATGCCGCACCGGGCGCTTTTATTGTTAACGTTGGTGATCAAATGCAGATTCTGACAAACGACAAGTACAAGAGCATATGGCATCGGGCAACTGTGAACAACATAGCTACTAGGATATCGATCGCCGTACCACATGGACCGGCACTCGACACTCCTGCTCTCCCAATCCCGGTGTTGCTAGAAAAGGAAGGCGAAAAGGCAAAGTACATTGGAATGACTTATGAGAAGTTCATGGAACTTCAGGCAAGCCCCGCCGCCTACATGATGCCTTGCTTGGATCGGACCTGCGGGTCAAGGACAATTGAAGAAAGTACATGCATGGCGGCCGGCTTGCCGGCGTTTCTCTGTTTTCGTTTTGTAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

299

Amino Acids

33.54

Weight (kDa)

5.8

Isoelectric Point (pI)

40.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	1 - 77	2.2e-13	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	127 - 222	1.4e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002403)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g38040 FvH4_5g38040 FvH4_5g38050
malus_domestica	MD05G1046000.v1.1 MD10G1052800.v1.1 MD10G1053000.v1.1 MD10G1053100.v1.1 MD10G1053200.v1.1
prunus_persica	Prupe.8G066500_v2.0.a1 Prupe.8G066600_v2.0.a1 Prupe.8G066600_v2.0.a1
pyrus_communis	pycom05g03830 pycom10g03780 pycom10g03830 pycom10g03910 pycom10g04020
rosa_chinensis	RchiOBHm_Chr6g0265671 RchiOBHm_Chr7g0239961 RchiOBHm_Chr7g0239991
rosa_laevigata	RLG00000000713 RLG00000000714 RLG00000014168
rosa_multiflora	Rmu_co8141760.1_g000001 Rmu_sc0000540.1_g000014 Rmu_sc0000540.1_g000017 Rmu_sc0006825.1_g000004
rosa_roxburghii	Rroxscaffold_3G00220550 Rroxscaffold_3G00220590
rosa_rugosa	Rorug06G0018400 Rorug07G0331500
rosa_samantha	Rh6BG140400 Rh6CG137300 Rh6DG123800 Rh7AG485400 Rh7AG485500 Rh7BG458200 Rh7BG458300 Rh7CG502500 Rh7CG502700 Rh7DG470900 Rh7DG471000
rosa_wichuraiana	Rw7G040700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	820
Acc36I	ACCTGC	2 cut(s)	247, 824
AccB1I	GGYRCC	1 cut(s)	146
AccB7I	CCANNNNNTGG	1 cut(s)	363
AccII	CGCG	2 cut(s)	65, 372
AciI	CCGC	6 cut(s)	144, 537, 783, 786, 819, 854
AclI	AACGTT	2 cut(s)	159, 561
AclWI	GGATC	2 cut(s)	375, 816
AcoI	YGGCCR	1 cut(s)	855
AcsI	RAATTY	2 cut(s)	218, 381
AcuI	CTGAAG	1 cut(s)	755
AfaI	GTAC	6 cut(s)	33, 248, 599, 660, 737, 844
AfiI	CCNNNNNNNGG	2 cut(s)	363, 700
AflIII	ACRYGT	1 cut(s)	63
AgsI	TTSAA	6 cut(s)	157, 223, 307, 479, 500, 836
AjnI	CCWGG	1 cut(s)	423
AluBI	AGCT	3 cut(s)	85, 153, 638
AluI	AGCT	3 cut(s)	85, 153, 638
AlwI	GGATC	2 cut(s)	375, 816
AlwNI	CAGNNNCTG	1 cut(s)	583
AoxI	GGCC	3 cut(s)	354, 493, 855
ApeKI	GCWGC	2 cut(s)	85, 389
ApoI	RAATTY	2 cut(s)	218, 381
Asp700I	GAANNNNTTC	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	548
AspS9I	GGNCC	3 cut(s)	130, 668, 813
AsuC2I	CCSGG	3 cut(s)	404, 543, 701
AsuHPI	GGTGA	3 cut(s)	475, 541, 578
AvaII	GGWCC	3 cut(s)	130, 668, 813
BanI	GGYRCC	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	339
BbvI	GCAGC	2 cut(s)	72, 401
BceAI	ACGGC	1 cut(s)	641
BcgI	CGANNNNNNTGC	4 cut(s)	329, 363, 668, 702
BciT130I	CCWGG	1 cut(s)	425
BclI	TGATCA	2 cut(s)	514, 568
BcnI	CCSGG	3 cut(s)	404, 543, 701
BfaI	CTAG	2 cut(s)	642, 710
BfoI	RGCGCY	1 cut(s)	549
BfuAI	ACCTGC	2 cut(s)	247, 824
BisI	GCNGC	6 cut(s)	86, 145, 390, 537, 786, 855
BlsI	GCNGC	6 cut(s)	87, 146, 391, 538, 787, 856
Bme1390I	CCNGG	4 cut(s)	404, 425, 543, 701
Bme18I	GGWCC	3 cut(s)	130, 668, 813
BmgT120I	GGNCC	3 cut(s)	130, 668, 813
BmiI	GGNNCC	3 cut(s)	132, 148, 336
BmrFI	CCNGG	4 cut(s)	404, 425, 543, 701
BmrI	ACTGGG	1 cut(s)	373
BmsI	GCATC	2 cut(s)	622, 786
BmuI	ACTGGG	1 cut(s)	373
BpuEI	CTTGAG	1 cut(s)	182
BpuMI	CCSGG	3 cut(s)	404, 543, 701
Bsa29I	ATCGAT	1 cut(s)	650
BsaBI	GATNNNNATC	1 cut(s)	650
BsaJI	CCNNGG	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	2 cut(s)	363, 700
Bse118I	RCCGGY	3 cut(s)	670, 857, 865
Bse1I	ACTGG	3 cut(s)	368, 380, 465
Bse3DI	GCAATG	1 cut(s)	345
Bse8I	GATNNNNATC	1 cut(s)	650
BseBI	CCWGG	1 cut(s)	425
BseCI	ATCGAT	1 cut(s)	650
BseDI	CCNNGG	1 cut(s)	25
BseJI	GATNNNNATC	1 cut(s)	650
BseLI	CCNNNNNNNGG	2 cut(s)	363, 700
BseMI	GCAATG	1 cut(s)	345
BseNI	ACTGG	3 cut(s)	368, 380, 465
BseRI	GAGGAG	3 cut(s)	107, 110, 432
BseX3I	CGGCCG	1 cut(s)	855
BseXI	GCAGC	2 cut(s)	72, 401
BseYI	CCCAGC	1 cut(s)	242
Bsh1236I	CGCG	2 cut(s)	65, 372
Bsh1285I	CGRYCG	2 cut(s)	654, 858
BshFI	GGCC	3 cut(s)	356, 495, 857
BshNI	GGYRCC	1 cut(s)	146
BshVI	ATCGAT	1 cut(s)	650
BsiEI	CGRYCG	2 cut(s)	654, 858
BsiSI	CCGG	7 cut(s)	89, 404, 542, 671, 701, 858, 866
BslI	CCNNNNNNNGG	2 cut(s)	363, 700
BsmI	GAATGC	1 cut(s)	538
BsnI	GGCC	3 cut(s)	356, 495, 857
Bsp1286I	GDGCHC	1 cut(s)	339
Bsp143I	GATC	8 cut(s)	18, 57, 367, 451, 514, 568, 651, 808
Bsp19I	CCATGG	1 cut(s)	25
Bsp68I	TCGCGA	1 cut(s)	372
BspACI	CCGC	6 cut(s)	144, 537, 783, 786, 819, 854
BspANI	GGCC	3 cut(s)	356, 495, 857
BspDI	ATCGAT	1 cut(s)	650
BspFNI	CGCG	2 cut(s)	65, 372
BspLI	GGNNCC	3 cut(s)	132, 148, 336
BspMI	ACCTGC	2 cut(s)	247, 824
BspPI	GGATC	2 cut(s)	375, 816
BspT107I	GGYRCC	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	345
BsrFI	RCCGGY	3 cut(s)	670, 857, 865
BsrI	ACTGG	3 cut(s)	368, 380, 465
BssAI	RCCGGY	3 cut(s)	670, 857, 865
BssECI	CCNNGG	1 cut(s)	25
BssMI	GATC	8 cut(s)	18, 57, 367, 451, 514, 568, 651, 808
BssT1I	CCWWGG	1 cut(s)	25
Bst2UI	CCWGG	1 cut(s)	425
Bst4CI	ACNGT	2 cut(s)	251, 625
BstC8I	GCNNGC	6 cut(s)	67, 409, 778, 859, 863, 867
BstDSI	CCRYGG	1 cut(s)	25
BstFNI	CGCG	2 cut(s)	65, 372
BstH2I	RGCGCY	1 cut(s)	549
BstHHI	GCGC	1 cut(s)	548
BstKTI	GATC	8 cut(s)	21, 60, 370, 454, 517, 571, 654, 811
BstMBI	GATC	8 cut(s)	18, 57, 367, 451, 514, 568, 651, 808
BstMCI	CGRYCG	2 cut(s)	654, 858
BstMWI	GCNNNNNNNGC	3 cut(s)	150, 545, 782
BstNI	CCWGG	1 cut(s)	425
BstNSI	RCATGY	1 cut(s)	849
BstSCI	CCNGG	4 cut(s)	402, 423, 541, 699
BstUI	CGCG	2 cut(s)	65, 372
BstV1I	GCAGC	2 cut(s)	72, 401
BstZI	CGGCCG	1 cut(s)	855
Bsu15I	ATCGAT	1 cut(s)	650
BsuRI	GGCC	3 cut(s)	356, 495, 857
BsuTUI	ATCGAT	1 cut(s)	650
BtgI	CCRYGG	1 cut(s)	25
BtgZI	GCGATG	1 cut(s)	190
BtsIMutI	CAGTG	2 cut(s)	256, 524
BtuMI	TCGCGA	1 cut(s)	372
BveI	ACCTGC	2 cut(s)	247, 824
Cac8I	GCNNGC	6 cut(s)	67, 409, 778, 859, 863, 867
CaiI	CAGNNNCTG	1 cut(s)	583
CfoI	GCGC	1 cut(s)	548
Cfr10I	RCCGGY	3 cut(s)	670, 857, 865
Cfr13I	GGNCC	3 cut(s)	130, 668, 813
ClaI	ATCGAT	1 cut(s)	650
CseI	GACGC	2 cut(s)	71, 475
Csp6I	GTAC	6 cut(s)	32, 247, 598, 659, 736, 843
CviAII	CATG	8 cut(s)	26, 358, 455, 665, 763, 793, 846, 850
CviQI	GTAC	6 cut(s)	32, 247, 598, 659, 736, 843
DpnI	GATC	8 cut(s)	20, 59, 369, 453, 516, 570, 653, 810
DpnII	GATC	8 cut(s)	18, 57, 367, 451, 514, 568, 651, 808
DrdI	GACNNNNNNGTC	1 cut(s)	820
DseDI	GACNNNNNNGTC	1 cut(s)	820
EaeI	YGGCCR	1 cut(s)	855
EagI	CGGCCG	1 cut(s)	855
EclXI	CGGCCG	1 cut(s)	855
Eco130I	CCWWGG	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	339
Eco32I	GATATC	1 cut(s)	648
Eco47I	GGWCC	3 cut(s)	130, 668, 813
Eco52I	CGGCCG	1 cut(s)	855
Eco57I	CTGAAG	1 cut(s)	755
EcoRII	CCWGG	1 cut(s)	423
EcoRV	GATATC	1 cut(s)	648
EcoT14I	CCWWGG	1 cut(s)	25
EcoT22I	ATGCAT	1 cut(s)	851
EcoT38I	GRGCYC	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	25
FaeI	CATG	8 cut(s)	29, 361, 458, 668, 766, 796, 849, 853
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FatI	CATG	8 cut(s)	25, 357, 454, 664, 762, 792, 845, 849
FauI	CCCGC	2 cut(s)	790, 812
FauNDI	CATATG	1 cut(s)	608
FbaI	TGATCA	2 cut(s)	514, 568
Fnu4HI	GCNGC	6 cut(s)	86, 145, 390, 537, 786, 855
FriOI	GRGCYC	1 cut(s)	339
Fsp4HI	GCNGC	6 cut(s)	86, 145, 390, 537, 786, 855
FspBI	CTAG	2 cut(s)	642, 710
GlaI	GCGC	1 cut(s)	547
GluI	GCNGC	6 cut(s)	86, 145, 390, 537, 786, 855
GsaI	CCCAGC	1 cut(s)	246
HaeII	RGCGCY	1 cut(s)	549
HaeIII	GGCC	3 cut(s)	356, 495, 857
HapII	CCGG	7 cut(s)	89, 404, 542, 671, 701, 858, 866
HgaI	GACGC	2 cut(s)	71, 475
HhaI	GCGC	1 cut(s)	548
Hin1II	CATG	8 cut(s)	29, 361, 458, 668, 766, 796, 849, 853
Hin6I	GCGC	1 cut(s)	546
HinP1I	GCGC	1 cut(s)	546
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HinfI	GANTC	3 cut(s)	307, 475, 580
HpaI	GTTAAC	1 cut(s)	559
HpaII	CCGG	7 cut(s)	89, 404, 542, 671, 701, 858, 866
HphI	GGTGA	3 cut(s)	475, 541, 578
Hpy166II	GTNNAC	3 cut(s)	32, 559, 628
Hpy188I	TCNGA	3 cut(s)	319, 585, 813
Hpy188III	TCNNGA	2 cut(s)	371, 472
Hpy8I	GTNNAC	3 cut(s)	32, 559, 628
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	2 cut(s)	97, 713
HpyCH4III	ACNGT	2 cut(s)	251, 625
HpyCH4IV	ACGT	2 cut(s)	159, 561
HpyCH4V	TGCA	4 cut(s)	164, 350, 577, 849
HpyF10VI	GCNNNNNNNGC	3 cut(s)	150, 545, 782
HpySE526I	ACGT	2 cut(s)	159, 561
Hsp92II	CATG	8 cut(s)	29, 361, 458, 668, 766, 796, 849, 853
HspAI	GCGC	1 cut(s)	546
KroI	GCCGGC	2 cut(s)	857, 865
KroNI	GCCGGC	2 cut(s)	859, 867
Ksp22I	TGATCA	2 cut(s)	514, 568
KspAI	GTTAAC	1 cut(s)	559
Kzo9I	GATC	8 cut(s)	18, 57, 367, 451, 514, 568, 651, 808
LmnI	GCTCC	2 cut(s)	334, 474
Lsp1109I	GCAGC	2 cut(s)	72, 401
LweI	GCATC	2 cut(s)	622, 786
MaeI	CTAG	2 cut(s)	642, 710
MaeII	ACGT	2 cut(s)	159, 561
MaeIII	GTNAC	1 cut(s)	463
MalI	GATC	8 cut(s)	20, 59, 369, 453, 516, 570, 653, 810
MboI	GATC	8 cut(s)	18, 57, 367, 451, 514, 568, 651, 808
MboII	GAAGA	2 cut(s)	112, 848
MfeI	CAATTG	2 cut(s)	165, 831
MhlI	GDGCHC	1 cut(s)	339
MluCI	AATT	4 cut(s)	165, 218, 381, 831
MluI	ACGCGT	1 cut(s)	63
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	5 cut(s)	85, 88, 180, 450, 453
Mph1103I	ATGCAT	1 cut(s)	851
MroNI	GCCGGC	2 cut(s)	857, 865
MroXI	GAANNNNTTC	1 cut(s)	107
MseI	TTAA	1 cut(s)	558
MslI	CAYNNNNRTG	1 cut(s)	743
MspI	CCGG	7 cut(s)	89, 404, 542, 671, 701, 858, 866
MspR9I	CCNGG	4 cut(s)	404, 425, 543, 701
MunI	CAATTG	2 cut(s)	165, 831
Mva1269I	GAATGC	1 cut(s)	538
MvaI	CCWGG	1 cut(s)	425
MvnI	CGCG	2 cut(s)	65, 372
MwoI	GCNNNNNNNGC	3 cut(s)	150, 545, 782
NaeI	GCCGGC	2 cut(s)	859, 867
NciI	CCSGG	3 cut(s)	404, 543, 701
NcoI	CCATGG	1 cut(s)	25
NdeI	CATATG	1 cut(s)	608
NdeII	GATC	8 cut(s)	18, 57, 367, 451, 514, 568, 651, 808
NgoMIV	GCCGGC	2 cut(s)	857, 865
NlaIII	CATG	8 cut(s)	29, 361, 458, 668, 766, 796, 849, 853
NlaIV	GGNNCC	3 cut(s)	132, 148, 336
NmuCI	GTSAC	1 cut(s)	463
NruI	TCGCGA	1 cut(s)	372
NsiI	ATGCAT	1 cut(s)	851
NspI	RCATGY	1 cut(s)	849
PctI	GAATGC	1 cut(s)	538
PdiI	GCCGGC	2 cut(s)	859, 867
PdmI	GAANNNNTTC	1 cut(s)	107
PfeI	GAWTC	3 cut(s)	307, 475, 580
PflMI	CCANNNNNTGG	1 cut(s)	363
PkrI	GCNGC	6 cut(s)	87, 146, 391, 538, 787, 856
Ple19I	CGATCG	1 cut(s)	654
Psp1406I	AACGTT	2 cut(s)	159, 561
Psp6I	CCWGG	1 cut(s)	423
PspFI	CCCAGC	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	423
PspN4I	GGNNCC	3 cut(s)	132, 148, 336
PspPI	GGNCC	3 cut(s)	130, 668, 813
PstNI	CAGNNNCTG	1 cut(s)	583
PvuI	CGATCG	1 cut(s)	654
RruI	TCGCGA	1 cut(s)	372
RsaI	GTAC	6 cut(s)	33, 248, 599, 660, 737, 844
RsaNI	GTAC	6 cut(s)	32, 247, 598, 659, 736, 843
RseI	CAYNNNNRTG	1 cut(s)	743
SaqAI	TTAA	1 cut(s)	558
SatI	GCNGC	6 cut(s)	86, 145, 390, 537, 786, 855
Sau3AI	GATC	8 cut(s)	18, 57, 367, 451, 514, 568, 651, 808
Sau96I	GGNCC	3 cut(s)	130, 668, 813
ScrFI	CCNGG	4 cut(s)	404, 425, 543, 701
SduI	GDGCHC	1 cut(s)	339
SfaNI	GCATC	2 cut(s)	622, 786
SinI	GGWCC	3 cut(s)	130, 668, 813
SmiMI	CAYNNNNRTG	1 cut(s)	743
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	4 cut(s)	165, 218, 381, 831
SsiI	CCGC	6 cut(s)	144, 537, 783, 786, 819, 854
SspI	AATATT	1 cut(s)	303
SspMI	CTAG	2 cut(s)	642, 710
StyD4I	CCNGG	4 cut(s)	402, 423, 541, 699
StyI	CCWWGG	1 cut(s)	25
TaaI	ACNGT	2 cut(s)	251, 625
TaiI	ACGT	2 cut(s)	162, 564
TaqI	TCGA	4 cut(s)	60, 310, 650, 678
TasI	AATT	4 cut(s)	165, 218, 381, 831
TatI	WGTACW	3 cut(s)	597, 735, 842
TauI	GCSGC	4 cut(s)	147, 539, 788, 857
TfiI	GAWTC	3 cut(s)	307, 475, 580
Tru1I	TTAA	1 cut(s)	558
Tru9I	TTAA	1 cut(s)	558
TscAI	CASTG	2 cut(s)	256, 524
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	2 cut(s)	85, 389
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	4 cut(s)	62, 249, 374, 751
TspRI	CASTG	2 cut(s)	256, 524
Van91I	CCANNNNNTGG	1 cut(s)	363
VpaK11BI	GGWCC	3 cut(s)	130, 668, 813
XapI	RAATTY	2 cut(s)	218, 381
XceI	RCATGY	1 cut(s)	849
XmnI	GAANNNNTTC	1 cut(s)	107
XspI	CTAG	2 cut(s)	642, 710
Zsp2I	ATGCAT	1 cut(s)	851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.