Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003341

Physical Location & Seq

Genomic Coordinates Forward (+)

8425551 .. 8432048

Gene Structure 6498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGTATCGGACTCGGAACTCCTGACCCGGCTCAGAGAAATCCTCGGTACTTCGGACCTCGACACGGCCACCGCCGGCAGTGTTCGCCGGCAACTCGAAGCCGATTTCGGAGTTGATCTGTCGGACCGGAAAAAGTTTATCCGGGACCAAATTGACATTTACCTCGAGACCCAGACCGAACCCCAAGACGAAGAAGCAGAGGAGGAGGTCGGTGAAGCCTCAGAGAACGCAGAACAAAACGACCACGTTAAGGAAGAAGACGAAGAAGAAGAGGAGGAGGAAGGGGAAGAGAAGGGAAGCAAAAGGAAAAGGAGAAAAACGGTGGATAAAGGTGTCGCCAAAAGAGGTGGCTTCAATAAAATATGTAGCTTGTCTCCACAACTTCAAGAATTTGTTGGGGAGCCTGAAATGGCAAGAACAGAGGTGGTCAGGAGAATTTGGGCCTATATCCGGGAAAAGGATTTGCAGGACCCAAAAAATAGGAGAAATATTAGATGTGATGAATCACTACATTCCCTTTTCCGTGTTAATTCTATTAATATGTTTCAAATGAATAAAGTCCTCTCCAAGCATATATGGCCGCTTAGCGGGGAAGATGAACCTGTAAAGAAAAAGAAGAAAGTGGAAGAAAGTGATCATTCTGTCTCTGAAGGAAGTAATGTAGCTGAACAGGAGGAAGAAGAGGTGGAGGAAAAAGAGGAGGTGGAGGTAGAAAGAGGTAGTAGACGAAAAGAAACCAAGAAACAAAGGTCTACTAAAGTGGATAAAGAAGTCAAGAAAAGGGGAGGTGGTGGTGGATTTACCAAATTATGCAGCCTTTCTCCAGAACTTCAAAAGTTCACTGGAGTGTCAGCATTGGCCAGAACAGAGGTCGTGAAGAAACTTTGGATTTATATCCGGGAGAACAATTTGCAAGATCCAAAGAACAAACGCGATATAATATGTGATGAGTCATTGCGTGCCCTTTTTGATGTTGATTGCATCAATATGTTTCAAATGAATAAAGCTCTGTGCAAGCACATATTGCCCTTAAATGAAGAAGCAGCTCGAGATGACGCTTCACAAAAGGAAAACCAGTCTGAAGAGGAGGAAGAAGAAGGTGAGAAAAATAAATTCAGGTCTTCAGTTTATCGAACTTTGTTGGGTTGCAAAATTATCGTTCATTTAGGCATTCATTCCACATCTTGCATGCTGGTACTGATCCGACTAATAAGCAGAGTACCATTCGTGATGATAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

414

Amino Acids

47.52

Weight (kDa)

5.24

Isoelectric Point (pI)

69.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	2 - 54	3.8e-19	DEK C terminal domain
SWIB	PF02201	120 - 192	2.6e-30	SWIB/MDM2 domain
SWIB	PF02201	269 - 341	1e-28	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49520 AT3G19080 AT3G19080 AT3G19080 AT3G19080
fragaria_vesca	FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890 FvH4_2g06890
malus_domestica	MD10G1089200.v1.1
prunus_persica	Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1 Prupe.8G116100_v2.0.a1
pyrus_communis	pycom05g06780 pycom10g07210
rosa_chinensis	RchiOBHm_Chr6g0259201
rosa_laevigata	RLG00000014549
rosa_multiflora	Rmu_ssc0000050.1_g000095
rosa_roxburghii	Rroxscaffold_7G00206510
rosa_rugosa	Rorug05G0585700 Rorug05G0585800 Rorug05G0585900
rosa_samantha	Rh6AG102700 Rh6BG095000 Rh6BG095100 Rh6CG092000 Rh6DG086000
rosa_wichuraiana	Rw6G008870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	724, 752
AccII	CGCG	1 cut(s)	933
AciI	CCGC	3 cut(s)	72, 581, 588
AclWI	GGATC	2 cut(s)	911, 1195
AcoI	YGGCCR	3 cut(s)	66, 578, 858
AcsI	RAATTY	3 cut(s)	389, 435, 1112
AcuI	CTGAAG	3 cut(s)	669, 1101, 1107
AfaI	GTAC	3 cut(s)	49, 1197, 1221
AfiI	CCNNNNNNNGG	5 cut(s)	64, 250, 450, 457, 587
AgsI	TTSAA	5 cut(s)	355, 386, 548, 833, 995
AleI	CACNNNNGTG	1 cut(s)	845
AluBI	AGCT	5 cut(s)	369, 665, 1007, 1046, 1239
AluI	AGCT	5 cut(s)	369, 665, 1007, 1046, 1239
Alw26I	GTCTC	3 cut(s)	161, 378, 649
AlwI	GGATC	2 cut(s)	911, 1195
Ama87I	CYCGRG	2 cut(s)	164, 1047
AoxI	GGCC	4 cut(s)	66, 441, 578, 858
ApeKI	GCWGC	2 cut(s)	813, 1043
ApoI	RAATTY	3 cut(s)	389, 435, 1112
AseI	ATTAAT	1 cut(s)	537
AspS9I	GGNCC	5 cut(s)	55, 124, 145, 441, 469
AsuC2I	CCSGG	4 cut(s)	28, 143, 452, 899
AsuHPI	GGTGA	2 cut(s)	224, 1112
AvaI	CYCGRG	2 cut(s)	164, 1047
AvaII	GGWCC	4 cut(s)	55, 124, 145, 469
BaeGI	GKGCMC	1 cut(s)	964
BalI	TGGCCA	1 cut(s)	860
BbsI	GAAGAC	2 cut(s)	264, 1113
BbvI	GCAGC	2 cut(s)	825, 1055
BceAI	ACGGC	1 cut(s)	81
BcgI	CGANNNNNNTGC	2 cut(s)	1138, 1172
BclI	TGATCA	1 cut(s)	634
BcnI	CCSGG	4 cut(s)	28, 143, 452, 899
BcoDI	GTCTC	3 cut(s)	161, 378, 649
BisI	GCNGC	3 cut(s)	581, 814, 1044
BlpI	GCTNAGC	1 cut(s)	584
BlsI	GCNGC	3 cut(s)	582, 815, 1045
Bme1390I	CCNGG	4 cut(s)	28, 143, 452, 899
Bme18I	GGWCC	4 cut(s)	55, 124, 145, 469
BmeT110I	CYCGRG	2 cut(s)	164, 1047
BmgT120I	GGNCC	5 cut(s)	55, 124, 145, 441, 469
BmiI	GGNNCC	3 cut(s)	146, 402, 471
BmrFI	CCNGG	4 cut(s)	28, 143, 452, 899
BmsI	GCATC	1 cut(s)	990
BpiI	GAAGAC	2 cut(s)	264, 1113
BplI	GAGNNNNNCTC	2 cut(s)	27, 59
BpmI	CTGGAG	2 cut(s)	807, 864
Bpu1102I	GCTNAGC	1 cut(s)	584
BpuMI	CCSGG	4 cut(s)	28, 143, 452, 899
BsaBI	GATNNNNATC	1 cut(s)	893
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	43
BsaWI	WCCGGW	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	5 cut(s)	64, 250, 450, 457, 587
Bse118I	RCCGGY	2 cut(s)	74, 87
Bse1I	ACTGG	2 cut(s)	847, 1075
Bse3DI	GCAATG	1 cut(s)	953
Bse8I	GATNNNNATC	1 cut(s)	893
BseDI	CCNNGG	1 cut(s)	43
BseJI	GATNNNNATC	1 cut(s)	893
BseLI	CCNNNNNNNGG	5 cut(s)	64, 250, 450, 457, 587
BseMI	GCAATG	1 cut(s)	953
BseMII	CTCAG	2 cut(s)	46, 234
BseNI	ACTGG	2 cut(s)	847, 1075
BseRI	GAGGAG	6 cut(s)	215, 218, 287, 290, 713, 1100
BseSI	GKGCMC	1 cut(s)	964
BseXI	GCAGC	2 cut(s)	825, 1055
Bsh1236I	CGCG	1 cut(s)	933
BshFI	GGCC	4 cut(s)	68, 443, 580, 860
BsiHKCI	CYCGRG	2 cut(s)	164, 1047
BsiSI	CCGG	7 cut(s)	28, 75, 88, 127, 142, 451, 898
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	5 cut(s)	64, 250, 450, 457, 587
BsmAI	GTCTC	3 cut(s)	161, 378, 649
BsmFI	GGGAC	1 cut(s)	158
BsmI	GAATGC	1 cut(s)	1170
BsnI	GGCC	4 cut(s)	68, 443, 580, 860
Bso31I	GGTCTC	1 cut(s)	161
BsoBI	CYCGRG	2 cut(s)	164, 1047
Bsp1286I	GDGCHC	1 cut(s)	964
Bsp143I	GATC	4 cut(s)	115, 634, 916, 1200
Bsp1720I	GCTNAGC	1 cut(s)	584
BspACI	CCGC	3 cut(s)	72, 581, 588
BspANI	GGCC	4 cut(s)	68, 443, 580, 860
BspCNI	CTCAG	2 cut(s)	45, 233
BspFNI	CGCG	1 cut(s)	933
BspLI	GGNNCC	3 cut(s)	146, 402, 471
BspPI	GGATC	2 cut(s)	911, 1195
BspTNI	GGTCTC	1 cut(s)	161
BsrDI	GCAATG	1 cut(s)	953
BsrFI	RCCGGY	2 cut(s)	74, 87
BsrI	ACTGG	2 cut(s)	847, 1075
BssAI	RCCGGY	2 cut(s)	74, 87
BssECI	CCNNGG	1 cut(s)	43
BssMI	GATC	4 cut(s)	115, 634, 916, 1200
Bst4CI	ACNGT	1 cut(s)	322
Bst6I	CTCTTC	4 cut(s)	264, 282, 675, 1077
BstAPI	GCANNNNNTGC	1 cut(s)	1024
BstC8I	GCNNGC	5 cut(s)	76, 89, 960, 1016, 1190
BstDEI	CTNAG	3 cut(s)	32, 220, 584
BstFNI	CGCG	1 cut(s)	933
BstKTI	GATC	4 cut(s)	118, 637, 919, 1203
BstMAI	GTCTC	3 cut(s)	161, 378, 649
BstMBI	GATC	4 cut(s)	115, 634, 916, 1200
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 577, 1024
BstNSI	RCATGY	1 cut(s)	1192
BstSCI	CCNGG	4 cut(s)	26, 141, 450, 897
BstSLI	GKGCMC	1 cut(s)	964
BstUI	CGCG	1 cut(s)	933
BstV1I	GCAGC	2 cut(s)	825, 1055
BstV2I	GAAGAC	2 cut(s)	264, 1113
BstX2I	RGATCY	1 cut(s)	916
BstYI	RGATCY	1 cut(s)	916
BsuRI	GGCC	4 cut(s)	68, 443, 580, 860
BtsI	GCAGTG	1 cut(s)	85
BtsIMutI	CAGTG	2 cut(s)	85, 840
Cac8I	GCNNGC	5 cut(s)	76, 89, 960, 1016, 1190
Cfr10I	RCCGGY	2 cut(s)	74, 87
Cfr13I	GGNCC	5 cut(s)	55, 124, 145, 441, 469
CpoI	CGGWCCG	1 cut(s)	124
CseI	GACGC	1 cut(s)	1064
Csp6I	GTAC	3 cut(s)	48, 1196, 1220
CspCI	CAANNNNNGTGG	2 cut(s)	328, 363
CspI	CGGWCCG	1 cut(s)	124
CviAII	CATG	1 cut(s)	1189
CviQI	GTAC	3 cut(s)	48, 1196, 1220
DdeI	CTNAG	3 cut(s)	32, 220, 584
DpnI	GATC	4 cut(s)	117, 636, 918, 1202
DpnII	GATC	4 cut(s)	115, 634, 916, 1200
EaeI	YGGCCR	3 cut(s)	66, 578, 858
Eam1104I	CTCTTC	4 cut(s)	264, 282, 675, 1077
EarI	CTCTTC	4 cut(s)	264, 282, 675, 1077
Eco31I	GGTCTC	1 cut(s)	161
Eco47I	GGWCC	4 cut(s)	55, 124, 145, 469
Eco57I	CTGAAG	3 cut(s)	669, 1101, 1107
Eco88I	CYCGRG	2 cut(s)	164, 1047
EcoO109I	RGGNCCY	1 cut(s)	469
FaeI	CATG	1 cut(s)	1192
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	1 cut(s)	1188
FauI	CCCGC	1 cut(s)	581
FbaI	TGATCA	1 cut(s)	634
FblI	GTMKAC	2 cut(s)	724, 752
Fnu4HI	GCNGC	3 cut(s)	581, 814, 1044
Fsp4HI	GCNGC	3 cut(s)	581, 814, 1044
GluI	GCNGC	3 cut(s)	581, 814, 1044
GsuI	CTGGAG	2 cut(s)	807, 864
HaeIII	GGCC	4 cut(s)	68, 443, 580, 860
HapII	CCGG	7 cut(s)	28, 75, 88, 127, 142, 451, 898
HgaI	GACGC	1 cut(s)	1064
Hin1II	CATG	1 cut(s)	1192
HinfI	GANTC	3 cut(s)	11, 503, 950
HpaII	CCGG	7 cut(s)	28, 75, 88, 127, 142, 451, 898
HphI	GGTGA	2 cut(s)	224, 1112
Hpy166II	GTNNAC	3 cut(s)	725, 753, 840
Hpy188III	TCNNGA	9 cut(s)	22, 166, 386, 430, 775, 824, 874, 1049, 1228
Hpy8I	GTNNAC	3 cut(s)	725, 753, 840
HpyAV	CCTTC	4 cut(s)	275, 286, 644, 1091
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	7 cut(s)	466, 813, 913, 981, 1014, 1149, 1188
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 577, 1024
HpyF3I	CTNAG	3 cut(s)	32, 220, 584
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	1 cut(s)	1192
KroI	GCCGGC	2 cut(s)	74, 87
KroNI	GCCGGC	2 cut(s)	76, 89
Ksp22I	TGATCA	1 cut(s)	634
Kzo9I	GATC	4 cut(s)	115, 634, 916, 1200
LmnI	GCTCC	1 cut(s)	400
Lsp1109I	GCAGC	2 cut(s)	825, 1055
LweI	GCATC	1 cut(s)	990
MaeII	ACGT	1 cut(s)	246
MalI	GATC	4 cut(s)	117, 636, 918, 1202
MboI	GATC	4 cut(s)	115, 634, 916, 1200
MflI	RGATCY	1 cut(s)	916
MhlI	GDGCHC	1 cut(s)	964
MlsI	TGGCCA	1 cut(s)	860
MluCI	AATT	8 cut(s)	150, 389, 435, 529, 806, 907, 1112, 1152
MluNI	TGGCCA	1 cut(s)	860
MlyI	GAGTC	2 cut(s)	5, 959
MmeI	TCCRAC	2 cut(s)	102, 1228
Mox20I	TGGCCA	1 cut(s)	860
MroNI	GCCGGC	2 cut(s)	74, 87
MscI	TGGCCA	1 cut(s)	860
MseI	TTAA	4 cut(s)	249, 528, 537, 1031
MslI	CAYNNNNRTG	2 cut(s)	845, 986
Msp20I	TGGCCA	1 cut(s)	860
MspI	CCGG	7 cut(s)	28, 75, 88, 127, 142, 451, 898
MspR9I	CCNGG	4 cut(s)	28, 143, 452, 899
Mva1269I	GAATGC	1 cut(s)	1170
MvnI	CGCG	1 cut(s)	933
MwoI	GCNNNNNNNGC	3 cut(s)	84, 577, 1024
NaeI	GCCGGC	2 cut(s)	76, 89
NciI	CCSGG	4 cut(s)	28, 143, 452, 899
NdeII	GATC	4 cut(s)	115, 634, 916, 1200
NgoMIV	GCCGGC	2 cut(s)	74, 87
NlaIII	CATG	1 cut(s)	1192
NlaIV	GGNNCC	3 cut(s)	146, 402, 471
NspI	RCATGY	1 cut(s)	1192
OliI	CACNNNNGTG	1 cut(s)	845
PaeI	GCATGC	1 cut(s)	1192
PaeR7I	CTCGAG	2 cut(s)	164, 1047
PctI	GAATGC	1 cut(s)	1170
PdiI	GCCGGC	2 cut(s)	76, 89
PfeI	GAWTC	1 cut(s)	503
PfoI	TCCNGGA	3 cut(s)	141, 450, 897
PkrI	GCNGC	3 cut(s)	582, 815, 1045
PleI	GAGTC	2 cut(s)	5, 958
PpsI	GAGTC	2 cut(s)	5, 958
PpuMI	RGGWCCY	1 cut(s)	469
PshBI	ATTAAT	1 cut(s)	537
Psp5II	RGGWCCY	1 cut(s)	469
PspN4I	GGNNCC	3 cut(s)	146, 402, 471
PspPI	GGNCC	5 cut(s)	55, 124, 145, 441, 469
PspPPI	RGGWCCY	1 cut(s)	469
PsuI	RGATCY	1 cut(s)	916
RsaI	GTAC	3 cut(s)	49, 1197, 1221
RsaNI	GTAC	3 cut(s)	48, 1196, 1220
RseI	CAYNNNNRTG	2 cut(s)	845, 986
Rsr2I	CGGWCCG	1 cut(s)	124
RsrII	CGGWCCG	1 cut(s)	124
SaqAI	TTAA	4 cut(s)	249, 528, 537, 1031
SatI	GCNGC	3 cut(s)	581, 814, 1044
Sau3AI	GATC	4 cut(s)	115, 634, 916, 1200
Sau96I	GGNCC	5 cut(s)	55, 124, 145, 441, 469
SchI	GAGTC	2 cut(s)	5, 959
ScrFI	CCNGG	4 cut(s)	28, 143, 452, 899
SduI	GDGCHC	1 cut(s)	964
SfaNI	GCATC	1 cut(s)	990
Sfr274I	CTCGAG	2 cut(s)	164, 1047
SinI	GGWCC	4 cut(s)	55, 124, 145, 469
SlaI	CTCGAG	2 cut(s)	164, 1047
SmiMI	CAYNNNNRTG	2 cut(s)	845, 986
SmlI	CTYRAG	2 cut(s)	164, 1047
SmoI	CTYRAG	2 cut(s)	164, 1047
SphI	GCATGC	1 cut(s)	1192
Sse9I	AATT	8 cut(s)	150, 389, 435, 529, 806, 907, 1112, 1152
SsiI	CCGC	3 cut(s)	72, 581, 588
SspI	AATATT	1 cut(s)	490
StyD4I	CCNGG	4 cut(s)	26, 141, 450, 897
TaaI	ACNGT	1 cut(s)	322
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	5 cut(s)	60, 96, 165, 1048, 1132
TaqII	GACCGA	1 cut(s)	191
TasI	AATT	8 cut(s)	150, 389, 435, 529, 806, 907, 1112, 1152
TauI	GCSGC	1 cut(s)	583
TfiI	GAWTC	1 cut(s)	503
Tru1I	TTAA	4 cut(s)	249, 528, 537, 1031
Tru9I	TTAA	4 cut(s)	249, 528, 537, 1031
TscAI	CASTG	2 cut(s)	85, 847
TseI	GCWGC	2 cut(s)	813, 1043
TspDTI	ATGAA	7 cut(s)	516, 566, 612, 1013, 1050, 1151, 1163
TspGWI	ACGGA	1 cut(s)	512
TspRI	CASTG	2 cut(s)	85, 847
VpaK11BI	GGWCC	4 cut(s)	55, 124, 145, 469
VspI	ATTAAT	1 cut(s)	537
XapI	RAATTY	3 cut(s)	389, 435, 1112
XceI	RCATGY	1 cut(s)	1192
XhoI	CTCGAG	2 cut(s)	164, 1047
XmiI	GTMKAC	2 cut(s)	724, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.