Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009019

Physical Location & Seq

Genomic Coordinates Reverse (-)

15408417 .. 15410267

Gene Structure 1851 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGAAATTGATAGGATGGTATGAAGAGGATCTGGAGGATGAGGACCCCATTATGGATATCGACAGCAGCAGCTCGAAGGATCCGCTTAATGTTGCTGAGTACATAGATGACATCTATGCTCACTACAGGAAATCTGAGAATTCAAGCTCTGTCTCCCCAAGTTACATGGCTCATCAACCTGACATCAACGAGAAAATGAGGGCGATTCTCATTGACTGGCTTATCGAGGTCCACTACAAGTTTGAGCTTATGGACGAGACACTATTCCTTACCGTAAATCTTATAGACAGGTTCCTTGAGCGCCAAACGGTGATCAGAAAGAAGCTTCAGTTGGTTGGTGTGACTGCCATGCTTCTAGCTTGCAAGTATGAGGAGGTTTCTGTCCCAATTGTGGAGGATTTTGTTCTGATATCAGATAAGGCATATTCAAGGAAAGATGTTCTTGATATGGAAAAATCAATGGTAAACAGCTTACAATTCAACTTCTCTGTTCCTACCGTGTATGTGTTCATGAGGCGGTTCCTCAAGGCAGCTCAATCAGACAAAAACCTTGAGTTTCTGTCCTTCTTCTTCATTGAGCTATGCCTGGTGGAGTACGAAATGCTCAGGTTCCCCCCCTCTATGCTAGCCGCTGCTGCAATTTATACTGCTCAGGGCACTCTGTCCCGGTTCAAGCAATGGAGCCAGACCAGCGAGTGGTATACAAATTACTCAGAAGATGAACTCCTAGAATGCTCGAGGATGATGGTTACTTTTCATCAGAAGGCTGAAACCGCAAAACTCACTGGAGTGCACAGGAAGTACAGCACACGGAAGTTTGGCTATGCAGCTAAAGCTCAACCAGCTGAGTTCCTCTTGGATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

289

Amino Acids

33.67

Weight (kDa)

5.06

Isoelectric Point (pI)

45.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	37 - 162	6.8e-49	Cyclin, N-terminal domain
Cyclin_C	PF02984	165 - 281	2.8e-38	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20610 AT1G76310 AT1G76310 AT1G76310 AT1G76310
fragaria_vesca	FvH4_2g16590
malus_domestica	MD05G1134100.v1.1 MD10G1139200.v1.1
prunus_persica	Prupe.8G177900_v2.0.a1
pyrus_communis	pycom05g13080 pycom10g11830
rosa_chinensis	RchiOBHm_Chr6g0280651
rosa_laevigata	RLG00000013039
rosa_multiflora	Rmu_co8479241.1_g000001 Rmu_sc0000976.1_g000005
rosa_roxburghii	Rroxscaffold_7G00187790
rosa_rugosa	Rorug06G0133400 Rorug06G0133400
rosa_samantha	Rh6AG246000 Rh6BG248300 Rh6CG249600
rosa_wichuraiana	Rw6G021290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	696
AccI	GTMKAC	1 cut(s)	701
AciI	CCGC	4 cut(s)	83, 517, 630, 774
AclWI	GGATC	3 cut(s)	36, 74, 87
AcsI	RAATTY	1 cut(s)	139
AcuI	CTGAAG	1 cut(s)	311
AfaI	GTAC	3 cut(s)	101, 596, 803
AfiI	CCNNNNNNNGG	3 cut(s)	52, 391, 696
AgsI	TTSAA	4 cut(s)	144, 429, 481, 673
AjnI	CCWGG	1 cut(s)	585
AjuI	GAANNNNNNNTTGG	2 cut(s)	314, 346
AleI	CACNNNNGTG	1 cut(s)	788
Alw21I	GWGCWC	1 cut(s)	795
Alw26I	GTCTC	2 cut(s)	157, 251
Alw44I	GTGCAC	1 cut(s)	791
AlwI	GGATC	3 cut(s)	36, 74, 87
Ama87I	CYCGRG	1 cut(s)	736
ApaLI	GTGCAC	1 cut(s)	791
ApeKI	GCWGC	6 cut(s)	66, 69, 530, 632, 635, 827
ApoI	RAATTY	1 cut(s)	139
AspLEI	GCGC	1 cut(s)	303
AspS9I	GGNCC	2 cut(s)	43, 229
AsuC2I	CCSGG	1 cut(s)	667
AsuHPI	GGTGA	1 cut(s)	322
AsuNHI	GCTAGC	1 cut(s)	625
AvaI	CYCGRG	1 cut(s)	736
AvaII	GGWCC	2 cut(s)	43, 229
BaeGI	GKGCMC	2 cut(s)	659, 795
BamHI	GGATCC	1 cut(s)	79
Bbv12I	GWGCWC	1 cut(s)	795
BbvI	GCAGC	6 cut(s)	78, 81, 542, 619, 622, 839
BccI	CCATC	2 cut(s)	9, 739
BciT130I	CCWGG	1 cut(s)	587
BclI	TGATCA	1 cut(s)	312
BcnI	CCSGG	1 cut(s)	667
BcoDI	GTCTC	2 cut(s)	157, 251
BfaI	CTAG	3 cut(s)	356, 626, 728
BfmI	CTRYAG	1 cut(s)	124
BfoI	RGCGCY	1 cut(s)	304
BisI	GCNGC	7 cut(s)	67, 70, 531, 630, 633, 636, 828
BlsI	GCNGC	7 cut(s)	68, 71, 532, 631, 634, 637, 829
Bme1390I	CCNGG	2 cut(s)	587, 667
Bme18I	GGWCC	2 cut(s)	43, 229
BmeT110I	CYCGRG	1 cut(s)	736
BmgT120I	GGNCC	2 cut(s)	43, 229
BmiI	GGNNCC	6 cut(s)	45, 81, 293, 521, 611, 683
BmrFI	CCNGG	2 cut(s)	587, 667
BmtI	GCTAGC	1 cut(s)	629
BpmI	CTGGAG	2 cut(s)	53, 807
Bpu10I	CCTNAGC	2 cut(s)	605, 651
BpuEI	CTTGAG	3 cut(s)	317, 509, 572
BpuMI	CCSGG	1 cut(s)	667
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 391, 696
Bse1I	ACTGG	2 cut(s)	221, 790
Bse3DI	GCAATG	1 cut(s)	683
BseBI	CCWGG	1 cut(s)	587
BseGI	GGATG	3 cut(s)	20, 43, 747
BseLI	CCNNNNNNNGG	3 cut(s)	52, 391, 696
BseMI	GCAATG	1 cut(s)	683
BseMII	CTCAG	6 cut(s)	87, 126, 619, 665, 726, 837
BseNI	ACTGG	2 cut(s)	221, 790
BseRI	GAGGAG	1 cut(s)	386
BseSI	GKGCMC	2 cut(s)	659, 795
BseXI	GCAGC	6 cut(s)	78, 81, 542, 619, 622, 839
BsiHKAI	GWGCWC	1 cut(s)	795
BsiHKCI	CYCGRG	1 cut(s)	736
BsiSI	CCGG	1 cut(s)	667
BslFI	GGGAC	2 cut(s)	368, 649
BslI	CCNNNNNNNGG	3 cut(s)	52, 391, 696
BsmAI	GTCTC	2 cut(s)	157, 251
BsmFI	GGGAC	2 cut(s)	368, 649
BsmI	GAATGC	1 cut(s)	737
BsoBI	CYCGRG	1 cut(s)	736
Bsp1286I	GDGCHC	2 cut(s)	659, 795
Bsp143I	GATC	4 cut(s)	28, 79, 312, 859
BspACI	CCGC	4 cut(s)	83, 517, 630, 774
BspCNI	CTCAG	6 cut(s)	88, 127, 618, 664, 725, 838
BspHI	TCATGA	1 cut(s)	510
BspLI	GGNNCC	6 cut(s)	45, 81, 293, 521, 611, 683
BspOI	GCTAGC	1 cut(s)	629
BspPI	GGATC	3 cut(s)	36, 74, 87
BsrDI	GCAATG	1 cut(s)	683
BsrI	ACTGG	2 cut(s)	221, 790
BssMI	GATC	4 cut(s)	28, 79, 312, 859
BssNAI	GTATAC	1 cut(s)	702
Bst1107I	GTATAC	1 cut(s)	702
Bst2UI	CCWGG	1 cut(s)	587
Bst4CI	ACNGT	3 cut(s)	274, 310, 499
Bst6I	CTCTTC	1 cut(s)	18
BstC8I	GCNNGC	2 cut(s)	361, 627
BstDEI	CTNAG	6 cut(s)	96, 135, 605, 651, 712, 846
BstF5I	GGATG	3 cut(s)	20, 43, 747
BstH2I	RGCGCY	1 cut(s)	304
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	4 cut(s)	31, 82, 315, 862
BstMAI	GTCTC	2 cut(s)	157, 251
BstMBI	GATC	4 cut(s)	28, 79, 312, 859
BstMWI	GCNNNNNNNGC	5 cut(s)	635, 690, 773, 833, 842
BstNI	CCWGG	1 cut(s)	587
BstSCI	CCNGG	2 cut(s)	585, 665
BstSFI	CTRYAG	1 cut(s)	124
BstSLI	GKGCMC	2 cut(s)	659, 795
BstV1I	GCAGC	6 cut(s)	78, 81, 542, 619, 622, 839
BstX2I	RGATCY	2 cut(s)	28, 79
BstYI	RGATCY	2 cut(s)	28, 79
BstZ17I	GTATAC	1 cut(s)	702
BtsCI	GGATG	3 cut(s)	20, 43, 747
BtsIMutI	CAGTG	2 cut(s)	783, 862
Cac8I	GCNNGC	2 cut(s)	361, 627
CciI	TCATGA	1 cut(s)	510
CfoI	GCGC	1 cut(s)	303
Cfr13I	GGNCC	2 cut(s)	43, 229
Csp6I	GTAC	3 cut(s)	100, 595, 802
CviAII	CATG	3 cut(s)	166, 349, 511
CviQI	GTAC	3 cut(s)	100, 595, 802
DdeI	CTNAG	6 cut(s)	96, 135, 605, 651, 712, 846
DpnI	GATC	4 cut(s)	30, 81, 314, 861
DpnII	GATC	4 cut(s)	28, 79, 312, 859
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Eco32I	GATATC	2 cut(s)	58, 411
Eco47I	GGWCC	2 cut(s)	43, 229
Eco57I	CTGAAG	1 cut(s)	311
Eco88I	CYCGRG	1 cut(s)	736
EcoO109I	RGGNCCY	1 cut(s)	43
EcoRI	GAATTC	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	585
EcoRV	GATATC	2 cut(s)	58, 411
FaeI	CATG	3 cut(s)	169, 352, 514
FalI	AAGNNNNNCTT	2 cut(s)	426, 458
FaqI	GGGAC	2 cut(s)	368, 649
FatI	CATG	3 cut(s)	165, 348, 510
FbaI	TGATCA	1 cut(s)	312
FblI	GTMKAC	1 cut(s)	701
Fnu4HI	GCNGC	7 cut(s)	67, 70, 531, 630, 633, 636, 828
FokI	GGATG	3 cut(s)	27, 50, 754
Fsp4HI	GCNGC	7 cut(s)	67, 70, 531, 630, 633, 636, 828
FspBI	CTAG	3 cut(s)	356, 626, 728
GlaI	GCGC	1 cut(s)	302
GluI	GCNGC	7 cut(s)	67, 70, 531, 630, 633, 636, 828
GsuI	CTGGAG	2 cut(s)	53, 807
HaeII	RGCGCY	1 cut(s)	304
HapII	CCGG	1 cut(s)	667
HhaI	GCGC	1 cut(s)	303
Hin1II	CATG	3 cut(s)	169, 352, 514
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	1 cut(s)	205
HpaII	CCGG	1 cut(s)	667
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	4 cut(s)	232, 466, 702, 793
Hpy188I	TCNGA	7 cut(s)	136, 317, 408, 415, 541, 715, 762
Hpy188III	TCNNGA	3 cut(s)	32, 443, 511
Hpy8I	GTNNAC	4 cut(s)	232, 466, 702, 793
HpyAV	CCTTC	3 cut(s)	70, 574, 757
HpyCH4III	ACNGT	3 cut(s)	274, 310, 499
HpyCH4V	TGCA	4 cut(s)	363, 638, 793, 827
HpyF10VI	GCNNNNNNNGC	5 cut(s)	635, 690, 773, 833, 842
HpyF3I	CTNAG	6 cut(s)	96, 135, 605, 651, 712, 846
Hsp92II	CATG	3 cut(s)	169, 352, 514
HspAI	GCGC	1 cut(s)	301
Ksp22I	TGATCA	1 cut(s)	312
Kzo9I	GATC	4 cut(s)	28, 79, 312, 859
LmnI	GCTCC	1 cut(s)	681
Lsp1109I	GCAGC	6 cut(s)	78, 81, 542, 619, 622, 839
MaeI	CTAG	3 cut(s)	356, 626, 728
MaeIII	GTNAC	3 cut(s)	161, 340, 748
MalI	GATC	4 cut(s)	30, 81, 314, 861
MboI	GATC	4 cut(s)	28, 79, 312, 859
MboII	GAAGA	4 cut(s)	35, 559, 562, 728
MfeI	CAATTG	1 cut(s)	387
MflI	RGATCY	2 cut(s)	28, 79
MhlI	GDGCHC	2 cut(s)	659, 795
MluCI	AATT	6 cut(s)	5, 139, 387, 476, 639, 706
MseI	TTAA	1 cut(s)	87
MslI	CAYNNNNRTG	1 cut(s)	788
MspA1I	CMGCKG	2 cut(s)	632, 845
MspI	CCGG	1 cut(s)	667
MspR9I	CCNGG	2 cut(s)	587, 667
MunI	CAATTG	1 cut(s)	387
Mva1269I	GAATGC	1 cut(s)	737
MvaI	CCWGG	1 cut(s)	587
MwoI	GCNNNNNNNGC	5 cut(s)	635, 690, 773, 833, 842
NciI	CCSGG	1 cut(s)	667
NdeII	GATC	4 cut(s)	28, 79, 312, 859
NheI	GCTAGC	1 cut(s)	625
NlaIII	CATG	3 cut(s)	169, 352, 514
NlaIV	GGNNCC	6 cut(s)	45, 81, 293, 521, 611, 683
NmuCI	GTSAC	1 cut(s)	340
OliI	CACNNNNGTG	1 cut(s)	788
PaeR7I	CTCGAG	1 cut(s)	736
PagI	TCATGA	1 cut(s)	510
PctI	GAATGC	1 cut(s)	737
PfeI	GAWTC	1 cut(s)	205
PflMI	CCANNNNNTGG	1 cut(s)	696
PkrI	GCNGC	7 cut(s)	68, 71, 532, 631, 634, 637, 829
PpuMI	RGGWCCY	1 cut(s)	43
Psp5II	RGGWCCY	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	585
PspGI	CCWGG	1 cut(s)	585
PspN4I	GGNNCC	6 cut(s)	45, 81, 293, 521, 611, 683
PspPI	GGNCC	2 cut(s)	43, 229
PspPPI	RGGWCCY	1 cut(s)	43
PspXI	VCTCGAGB	1 cut(s)	736
PsuI	RGATCY	2 cut(s)	28, 79
PvuII	CAGCTG	1 cut(s)	845
RsaI	GTAC	3 cut(s)	101, 596, 803
RsaNI	GTAC	3 cut(s)	100, 595, 802
RseI	CAYNNNNRTG	1 cut(s)	788
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	7 cut(s)	67, 70, 531, 630, 633, 636, 828
Sau3AI	GATC	4 cut(s)	28, 79, 312, 859
Sau96I	GGNCC	2 cut(s)	43, 229
ScrFI	CCNGG	2 cut(s)	587, 667
SduI	GDGCHC	2 cut(s)	659, 795
SfcI	CTRYAG	1 cut(s)	124
Sfr274I	CTCGAG	1 cut(s)	736
SinI	GGWCC	2 cut(s)	43, 229
SlaI	CTCGAG	1 cut(s)	736
SmiMI	CAYNNNNRTG	1 cut(s)	788
SmlI	CTYRAG	4 cut(s)	296, 524, 551, 736
SmoI	CTYRAG	4 cut(s)	296, 524, 551, 736
Sse9I	AATT	6 cut(s)	5, 139, 387, 476, 639, 706
SsiI	CCGC	4 cut(s)	83, 517, 630, 774
SspMI	CTAG	3 cut(s)	356, 626, 728
StyD4I	CCNGG	2 cut(s)	585, 665
TaaI	ACNGT	3 cut(s)	274, 310, 499
TaqI	TCGA	4 cut(s)	60, 74, 225, 737
TasI	AATT	6 cut(s)	5, 139, 387, 476, 639, 706
TatI	WGTACW	2 cut(s)	99, 801
TauI	GCSGC	1 cut(s)	632
TfiI	GAWTC	1 cut(s)	205
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	1 cut(s)	790
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	6 cut(s)	66, 69, 530, 632, 635, 827
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	6 cut(s)	17, 36, 499, 562, 735, 746
TspGWI	ACGGA	1 cut(s)	826
TspRI	CASTG	1 cut(s)	790
Van91I	CCANNNNNTGG	1 cut(s)	696
VneI	GTGCAC	1 cut(s)	791
VpaK11BI	GGWCC	2 cut(s)	43, 229
XapI	RAATTY	1 cut(s)	139
XhoI	CTCGAG	1 cut(s)	736
XmiI	GTMKAC	1 cut(s)	701
XspI	CTAG	3 cut(s)	356, 626, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.