pycom10g12950

CRM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0007087
Physical Location & Seq
Reverse (-)
16422365 .. 16423181
817 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 375 bp
ATGGGTCTCAAGTGCAAGAATTATGTGCTCGTTGGAAGACGGGGGATATACCAGGGTGTGATTCTGAATATGCACTTGCATTGGAAGAAACATCAAACGCTGCAGGTGGTGGTGAAAACATTCTCACCTGAGGAGGTTAAGGAGATTGCTTCTGAGCTGGCTAGATTAACCGGAGGGATTGTGCTCAGCATTCATGAAGAATACACGATAATTATGTATAGAGGGAAGAACTATTCTCAGCCTCCAACAGAAATCATGTCACCTAGGATCACTATCTCCAGGAAGAAGGCTTTAGATAAATCGAAGTACAAGGATGGTCTTCGCGCTGTAAGAAAGCATATCCCAAAACTTGAACAAGAACTTGAATTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
CRS1_YhbY EF-hand_1 EF-hand_5

Protein Analysis

125

Amino Acids

14.36

Weight (kDa)

9.83

Isoelectric Point (pI)

54.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRS1_YhbY PF01985 2 - 74 1.2e-14 CRS1 / YhbY (CRM) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 94
Acc36I ACCTGC 1 cut(s) 94
AccII CGCG 1 cut(s) 324
AclWI GGATC 1 cut(s) 275
AfaI GTAC 1 cut(s) 308
AgsI TTSAA 2 cut(s) 353, 365
AjnI CCWGG 2 cut(s) 51, 278
AluBI AGCT 1 cut(s) 157
AluI AGCT 1 cut(s) 157
Alw21I GWGCWC 2 cut(s) 30, 186
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 1 cut(s) 275
ApeKI GCWGC 1 cut(s) 100
Asp700I GAANNNNTTC 1 cut(s) 119
AspA2I CCTAGG 1 cut(s) 263
AspLEI GCGC 1 cut(s) 326
AsuHPI GGTGA 3 cut(s) 117, 124, 252
AvrII CCTAGG 1 cut(s) 263
AxyI CCTNAGG 1 cut(s) 129
BbsI GAAGAC 2 cut(s) 43, 311
Bbv12I GWGCWC 2 cut(s) 30, 186
BbvI GCAGC 1 cut(s) 87
BccI CCATC 1 cut(s) 308
BciT130I CCWGG 2 cut(s) 53, 280
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 2 cut(s) 162, 264
BfmI CTRYAG 1 cut(s) 101
BfuAI ACCTGC 1 cut(s) 94
BisI GCNGC 1 cut(s) 101
BlnI CCTAGG 1 cut(s) 263
BlpI GCTNAGC 1 cut(s) 185
BlsI GCNGC 1 cut(s) 102
Bme1390I CCNGG 2 cut(s) 53, 280
BmrFI CCNGG 2 cut(s) 53, 280
BpiI GAAGAC 2 cut(s) 43, 311
BpmI CTGGAG 1 cut(s) 262
Bpu1102I GCTNAGC 1 cut(s) 185
BsaBI GATNNNNATC 1 cut(s) 272
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 2 cut(s) 52, 263
BsaWI WCCGGW 1 cut(s) 170
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bse21I CCTNAGG 1 cut(s) 129
Bse8I GATNNNNATC 1 cut(s) 272
BseBI CCWGG 2 cut(s) 53, 280
BseDI CCNNGG 2 cut(s) 52, 263
BseGI GGATG 1 cut(s) 319
BseJI GATNNNNATC 1 cut(s) 272
BseMII CTCAG 4 cut(s) 120, 144, 199, 251
BseRI GAGGAG 1 cut(s) 146
BseXI GCAGC 1 cut(s) 87
Bsh1236I CGCG 1 cut(s) 324
BsiHKAI GWGCWC 2 cut(s) 30, 186
BsiSI CCGG 1 cut(s) 171
BsmAI GTCTC 1 cut(s) 11
BsmI GAATGC 1 cut(s) 189
Bso31I GGTCTC 1 cut(s) 11
Bsp1286I GDGCHC 2 cut(s) 30, 186
Bsp143I GATC 1 cut(s) 267
Bsp1720I GCTNAGC 1 cut(s) 185
BspCNI CTCAG 4 cut(s) 121, 145, 198, 250
BspFNI CGCG 1 cut(s) 324
BspHI TCATGA 1 cut(s) 193
BspMAI CTGCAG 1 cut(s) 105
BspMI ACCTGC 1 cut(s) 94
BspPI GGATC 1 cut(s) 275
BspTNI GGTCTC 1 cut(s) 11
BssECI CCNNGG 2 cut(s) 52, 263
BssMI GATC 1 cut(s) 267
BssT1I CCWWGG 1 cut(s) 263
Bst2UI CCWGG 2 cut(s) 53, 280
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 4 cut(s) 129, 153, 185, 237
BstF5I GGATG 1 cut(s) 319
BstFNI CGCG 1 cut(s) 324
BstHHI GCGC 1 cut(s) 326
BstKTI GATC 1 cut(s) 270
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 1 cut(s) 267
BstNI CCWGG 2 cut(s) 53, 280
BstSCI CCNGG 2 cut(s) 51, 278
BstSFI CTRYAG 1 cut(s) 101
BstUI CGCG 1 cut(s) 324
BstV1I GCAGC 1 cut(s) 87
BstV2I GAAGAC 2 cut(s) 43, 311
Bsu36I CCTNAGG 1 cut(s) 129
BtsCI GGATG 1 cut(s) 319
BveI ACCTGC 1 cut(s) 94
Cac8I GCNNGC 1 cut(s) 159
CciI TCATGA 1 cut(s) 193
CfoI GCGC 1 cut(s) 326
Csp6I GTAC 1 cut(s) 307
CviAII CATG 2 cut(s) 194, 256
CviJI RGCY 4 cut(s) 157, 161, 241, 290
CviKI_1 RGCY 4 cut(s) 157, 161, 241, 290
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 4 cut(s) 129, 153, 185, 237
DpnI GATC 1 cut(s) 269
DpnII GATC 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 263
Eco31I GGTCTC 1 cut(s) 11
Eco81I CCTNAGG 1 cut(s) 129
EcoRII CCWGG 2 cut(s) 51, 278
EcoT14I CCWWGG 1 cut(s) 263
ErhI CCWWGG 1 cut(s) 263
FaeI CATG 2 cut(s) 197, 259
FaiI YATR 8 cut(s) 24, 49, 71, 195, 215, 219, 257, 339
FatI CATG 2 cut(s) 193, 255
Fnu4HI GCNGC 1 cut(s) 101
FokI GGATG 1 cut(s) 326
Fsp4HI GCNGC 1 cut(s) 101
FspBI CTAG 2 cut(s) 162, 264
GlaI GCGC 1 cut(s) 325
GluI GCNGC 1 cut(s) 101
GsuI CTGGAG 1 cut(s) 262
HapII CCGG 1 cut(s) 171
HhaI GCGC 1 cut(s) 326
Hin1II CATG 2 cut(s) 197, 259
Hin6I GCGC 1 cut(s) 324
HinP1I GCGC 1 cut(s) 324
HinfI GANTC 1 cut(s) 61
HpaII CCGG 1 cut(s) 171
HphI GGTGA 3 cut(s) 117, 124, 252
Hpy188I TCNGA 2 cut(s) 66, 154
Hpy188III TCNNGA 1 cut(s) 194
HpyAV CCTTC 1 cut(s) 280
HpyCH4V TGCA 4 cut(s) 15, 73, 79, 103
HpyF3I CTNAG 4 cut(s) 129, 153, 185, 237
Hsp92II CATG 2 cut(s) 197, 259
HspAI GCGC 1 cut(s) 324
Kzo9I GATC 1 cut(s) 267
LpnPI CCDG 8 cut(s) 38, 65, 89, 141, 143, 184, 265, 292
Lsp1109I GCAGC 1 cut(s) 87
MaeI CTAG 2 cut(s) 162, 264
MaeIII GTNAC 1 cut(s) 258
MalI GATC 1 cut(s) 269
MboI GATC 1 cut(s) 267
MboII GAAGA 6 cut(s) 48, 97, 209, 238, 295, 311
MhlI GDGCHC 2 cut(s) 30, 186
MluCI AATT 3 cut(s) 19, 210, 365
MmeI TCCRAC 2 cut(s) 13, 269
MnlI CCTC 5 cut(s) 124, 127, 167, 215, 252
MroXI GAANNNNTTC 1 cut(s) 119
MseI TTAA 2 cut(s) 138, 167
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 2 cut(s) 53, 280
Mva1269I GAATGC 1 cut(s) 189
MvaI CCWGG 2 cut(s) 53, 280
MvnI CGCG 1 cut(s) 324
NdeII GATC 1 cut(s) 267
NlaIII CATG 2 cut(s) 197, 259
NmuCI GTSAC 1 cut(s) 258
PagI TCATGA 1 cut(s) 193
PaqCI CACCTGC 1 cut(s) 94
PctI GAATGC 1 cut(s) 189
PdmI GAANNNNTTC 1 cut(s) 119
PfeI GAWTC 1 cut(s) 61
PfoI TCCNGGA 1 cut(s) 278
PkrI GCNGC 1 cut(s) 102
Psp6I CCWGG 2 cut(s) 51, 278
PspGI CCWGG 2 cut(s) 51, 278
PstI CTGCAG 1 cut(s) 105
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
SaqAI TTAA 2 cut(s) 138, 167
SatI GCNGC 1 cut(s) 101
Sau3AI GATC 1 cut(s) 267
ScrFI CCNGG 2 cut(s) 53, 280
SduI GDGCHC 2 cut(s) 30, 186
SetI ASST 5 cut(s) 108, 130, 138, 159, 265
SfcI CTRYAG 1 cut(s) 101
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 3 cut(s) 19, 210, 365
SspMI CTAG 2 cut(s) 162, 264
StyD4I CCNGG 2 cut(s) 51, 278
StyI CCWWGG 1 cut(s) 263
TaqI TCGA 1 cut(s) 302
TasI AATT 3 cut(s) 19, 210, 365
TatI WGTACW 1 cut(s) 306
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 2 cut(s) 138, 167
Tru9I TTAA 2 cut(s) 138, 167
TseFI GTSAC 1 cut(s) 258
TseI GCWGC 1 cut(s) 100
Tsp45I GTSAC 1 cut(s) 258
TspDTI ATGAA 2 cut(s) 182, 210
XmaJI CCTAGG 1 cut(s) 263
XmnI GAANNNNTTC 1 cut(s) 119
XspI CTAG 2 cut(s) 162, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.