Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0011791

Physical Location & Seq

Genomic Coordinates Reverse (-)

17707260 .. 17710728

Gene Structure 3469 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGAAGGGAAGTTGGAAGACGAACAGCTGCAGCACAAAAGGGAAGAAGGATGATCTTTATCATGTTATTCACAAGGTTCCTTCTGGTGATAGTCCTTATGTAAGAGCCAAACATGCTCAGCTAGTTGAAAAGGATCCGGAGGCAGCAATAGTTTTGTTTTGGAAGGCAATAAATGCAGGAGACAGAGTGGACAGAGACCTAAAAGACATGGCTGTGGTGATGAAGCAACTGGACAGAACTGATGAGGCCATTGAAGCTGTCAAGTCCTTTAGAGGCCTTTGCTCCAAACAAGCCCAAGATTCACTTGATAATGTCCTCATTGACTTGTACAAGAAATGTGGCAAAGTTGAGGAGCAAATTGACTTGCTCAAGAGGAAGCTTAGGTTGATATACCAAGGCGCCGCCTTCAACGGAAAACCAACTAAAATCGCCCGCTCTCACGGAAAGAAGTTTCAGGTTTCAGTTACACAAGAGACCTCGAGATTACTGGGCAATTTGGGATGGGCCTATGTGCAAAAGGGTAACTACATGATGGCGGAGGTTGTGTATCGAAAGGCCCAAATGATCAACCCTAACTCGAACAAGGCATGTAACTTGGGCATGTGCCTGATCAAACAAGGCCGACACAAAGAGGCCCGTTTGGTTCTCGAAGATGTGGTGCACAGTAGACTTCCAGGATCCGAGGTGAGCAAGTCGAGGAAACGGGCGGACGAGTTGCTAATGGAGTTGAGGTCTATGAATTGTTTGCCAGAGTCATTGGATGTATTGAGCATAGATGATGATTTTGTGAAGGGGCTTGAGCAGTTGATGAATGAATGGGGTCCGTTTAGATCTAAAAGGCTTCCCATCTTTGAAGAGATCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006109 GO:0006792 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009889 GO:0009987 GO:0009991 GO:0010438 GO:0010439 GO:0010675 GO:0017053 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0042594 GO:0042762 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043255 GO:0043455 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051716 GO:0062012 GO:0065007 GO:0070013 GO:0071496 GO:0080090 GO:0090568 GO:1900376

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_2 TPR_8

Protein Analysis

289

Amino Acids

32.68

Weight (kDa)

9.28

Isoelectric Point (pI)

38.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_1	PF00515	161 - 192	5.7e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48850
fragaria_vesca	FvH4_2g19310 FvH4_2g19310
malus_domestica	MD05G1178100.v1.1 MD10G1166300.v1.1
prunus_persica	Prupe.8G204700_v2.0.a1
pyrus_communis	pycom05g16440 pycom10g14340
rosa_chinensis	RchiOBHm_Chr6g0285121
rosa_laevigata	RLG00000012671
rosa_multiflora	Rmu_sc0002535.1_g000032 Rmu_sc0003797.1_g000006
rosa_roxburghii	Rroxscaffold_7G00183650 Rroxscaffold_7G00184020
rosa_rugosa	Rorug06G0171300
rosa_samantha	Rh6BG283100 Rh6CG285000 Rh6DG278100
rosa_wichuraiana	Rw6G024280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	398
AccBSI	CCGCTC	1 cut(s)	435
AccI	GTMKAC	1 cut(s)	667
AccIII	TCCGGA	1 cut(s)	136
AciI	CCGC	4 cut(s)	402, 433, 536, 707
AclWI	GGATC	4 cut(s)	128, 141, 672, 685
AcyI	GRCGYC	1 cut(s)	399
AfaI	GTAC	1 cut(s)	329
AgsI	TTSAA	4 cut(s)	128, 254, 409, 854
AjnI	CCWGG	1 cut(s)	673
AluBI	AGCT	4 cut(s)	27, 121, 257, 379
AluI	AGCT	4 cut(s)	27, 121, 257, 379
Alw21I	GWGCWC	1 cut(s)	663
Alw26I	GTCTC	3 cut(s)	174, 189, 467
Alw44I	GTGCAC	1 cut(s)	659
AlwI	GGATC	4 cut(s)	128, 141, 672, 685
Ama87I	CYCGRG	1 cut(s)	478
Aor13HI	TCCGGA	1 cut(s)	136
AoxI	GGCC	6 cut(s)	246, 274, 504, 555, 619, 633
ApaLI	GTGCAC	1 cut(s)	659
ApeKI	GCWGC	3 cut(s)	27, 30, 143
AspLEI	GCGC	1 cut(s)	401
AspS9I	GGNCC	4 cut(s)	504, 556, 634, 821
AsuHPI	GGTGA	3 cut(s)	98, 229, 697
AvaI	CYCGRG	1 cut(s)	478
AvaII	GGWCC	1 cut(s)	821
BaeGI	GKGCMC	1 cut(s)	663
BamHI	GGATCC	2 cut(s)	133, 677
BanI	GGYRCC	1 cut(s)	398
BbsI	GAAGAC	1 cut(s)	23
Bbv12I	GWGCWC	1 cut(s)	663
BbvI	GCAGC	3 cut(s)	14, 42, 155
BccI	CCATC	3 cut(s)	495, 526, 854
BciT130I	CCWGG	1 cut(s)	675
BclI	TGATCA	2 cut(s)	564, 609
BcoDI	GTCTC	3 cut(s)	174, 189, 467
BfaI	CTAG	1 cut(s)	122
BfmI	CTRYAG	1 cut(s)	28
BfoI	RGCGCY	1 cut(s)	402
BglII	AGATCT	2 cut(s)	830, 858
BisI	GCNGC	4 cut(s)	28, 31, 144, 402
BlpI	GCTNAGC	1 cut(s)	117
BlsI	GCNGC	4 cut(s)	29, 32, 145, 403
Bme1390I	CCNGG	1 cut(s)	675
Bme18I	GGWCC	1 cut(s)	821
BmeT110I	CYCGRG	1 cut(s)	478
BmgT120I	GGNCC	4 cut(s)	504, 556, 634, 821
BmiI	GGNNCC	5 cut(s)	78, 135, 400, 679, 822
BmrFI	CCNGG	1 cut(s)	675
BmrI	ACTGGG	1 cut(s)	497
BmuI	ACTGGG	1 cut(s)	497
BpiI	GAAGAC	1 cut(s)	23
Bpu10I	CCTNAGC	1 cut(s)	380
Bpu1102I	GCTNAGC	1 cut(s)	117
BpuEI	CTTGAG	2 cut(s)	353, 818
BsaBI	GATNNNNATC	1 cut(s)	57
BsaHI	GRCGYC	1 cut(s)	399
BsaI	GGTCTC	2 cut(s)	189, 467
BsaJI	CCNNGG	2 cut(s)	394, 681
BsaWI	WCCGGW	1 cut(s)	136
BsaXI	ACNNNNNCTCC	6 cut(s)	171, 201, 530, 560, 716, 746
Bse1I	ACTGG	2 cut(s)	234, 492
Bse8I	GATNNNNATC	1 cut(s)	57
BseAI	TCCGGA	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	675
BseDI	CCNNGG	2 cut(s)	394, 681
BseGI	GGATG	3 cut(s)	55, 506, 766
BseJI	GATNNNNATC	1 cut(s)	57
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	2 cut(s)	234, 492
BseRI	GAGGAG	1 cut(s)	365
BseSI	GKGCMC	1 cut(s)	663
BseXI	GCAGC	3 cut(s)	14, 42, 155
BshFI	GGCC	6 cut(s)	248, 276, 506, 557, 621, 635
BshNI	GGYRCC	1 cut(s)	398
BsiHKAI	GWGCWC	1 cut(s)	663
BsiHKCI	CYCGRG	1 cut(s)	478
BsiSI	CCGG	1 cut(s)	137
BsmAI	GTCTC	3 cut(s)	174, 189, 467
BsnI	GGCC	6 cut(s)	248, 276, 506, 557, 621, 635
Bso31I	GGTCTC	2 cut(s)	189, 467
BsoBI	CYCGRG	1 cut(s)	478
Bsp1286I	GDGCHC	1 cut(s)	663
Bsp13I	TCCGGA	1 cut(s)	136
Bsp1407I	TGTACA	1 cut(s)	327
Bsp143I	GATC	7 cut(s)	52, 133, 564, 609, 677, 830, 858
Bsp1720I	GCTNAGC	1 cut(s)	117
BspACI	CCGC	4 cut(s)	402, 433, 536, 707
BspANI	GGCC	6 cut(s)	248, 276, 506, 557, 621, 635
BspCNI	CTCAG	1 cut(s)	130
BspEI	TCCGGA	1 cut(s)	136
BspLI	GGNNCC	5 cut(s)	78, 135, 400, 679, 822
BspMAI	CTGCAG	1 cut(s)	32
BspPI	GGATC	4 cut(s)	128, 141, 672, 685
BspT107I	GGYRCC	1 cut(s)	398
BspTNI	GGTCTC	2 cut(s)	189, 467
BsrBI	CCGCTC	1 cut(s)	435
BsrGI	TGTACA	1 cut(s)	327
BsrI	ACTGG	2 cut(s)	234, 492
BssECI	CCNNGG	2 cut(s)	394, 681
BssMI	GATC	7 cut(s)	52, 133, 564, 609, 677, 830, 858
BssNI	GRCGYC	1 cut(s)	399
BssT1I	CCWWGG	1 cut(s)	394
Bst2UI	CCWGG	1 cut(s)	675
Bst4CI	ACNGT	1 cut(s)	665
Bst6I	CTCTTC	1 cut(s)	849
BstACI	GRCGYC	1 cut(s)	399
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstAUI	TGTACA	1 cut(s)	327
BstC8I	GCNNGC	1 cut(s)	433
BstDEI	CTNAG	2 cut(s)	117, 380
BstF5I	GGATG	3 cut(s)	55, 506, 766
BstH2I	RGCGCY	1 cut(s)	402
BstHHI	GCGC	1 cut(s)	401
BstKTI	GATC	7 cut(s)	55, 136, 567, 612, 680, 833, 861
BstMAI	GTCTC	3 cut(s)	174, 189, 467
BstMBI	GATC	7 cut(s)	52, 133, 564, 609, 677, 830, 858
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 173, 254
BstNI	CCWGG	1 cut(s)	675
BstNSI	RCATGY	3 cut(s)	116, 591, 604
BstSCI	CCNGG	1 cut(s)	673
BstSFI	CTRYAG	1 cut(s)	28
BstSLI	GKGCMC	1 cut(s)	663
BstV1I	GCAGC	3 cut(s)	14, 42, 155
BstV2I	GAAGAC	1 cut(s)	23
BstX2I	RGATCY	4 cut(s)	133, 677, 830, 858
BstYI	RGATCY	4 cut(s)	133, 677, 830, 858
BsuRI	GGCC	6 cut(s)	248, 276, 506, 557, 621, 635
BtsCI	GGATG	3 cut(s)	55, 506, 766
Cac8I	GCNNGC	1 cut(s)	433
CfoI	GCGC	1 cut(s)	401
Cfr13I	GGNCC	4 cut(s)	504, 556, 634, 821
Csp6I	GTAC	1 cut(s)	328
CspCI	CAANNNNNGTGG	2 cut(s)	319, 354
CviAII	CATG	6 cut(s)	62, 113, 208, 529, 588, 601
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	2 cut(s)	117, 380
DinI	GGCGCC	1 cut(s)	400
DpnI	GATC	7 cut(s)	54, 135, 566, 611, 679, 832, 860
DpnII	GATC	7 cut(s)	52, 133, 564, 609, 677, 830, 858
Eam1104I	CTCTTC	1 cut(s)	849
EarI	CTCTTC	1 cut(s)	849
EciI	GGCGGA	2 cut(s)	551, 722
Eco130I	CCWWGG	1 cut(s)	394
Eco147I	AGGCCT	1 cut(s)	276
Eco31I	GGTCTC	2 cut(s)	189, 467
Eco47I	GGWCC	1 cut(s)	821
Eco88I	CYCGRG	1 cut(s)	478
EcoRII	CCWGG	1 cut(s)	673
EcoT14I	CCWWGG	1 cut(s)	394
EgeI	GGCGCC	1 cut(s)	400
EheI	GGCGCC	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	394
FaeI	CATG	6 cut(s)	65, 116, 211, 532, 591, 604
FalI	AAGNNNNNCTT	2 cut(s)	288, 320
FatI	CATG	6 cut(s)	61, 112, 207, 528, 587, 600
FauI	CCCGC	1 cut(s)	440
FbaI	TGATCA	2 cut(s)	564, 609
FblI	GTMKAC	1 cut(s)	667
Fnu4HI	GCNGC	4 cut(s)	28, 31, 144, 402
FokI	GGATG	3 cut(s)	62, 513, 773
Fsp4HI	GCNGC	4 cut(s)	28, 31, 144, 402
FspBI	CTAG	1 cut(s)	122
GlaI	GCGC	1 cut(s)	400
GluI	GCNGC	4 cut(s)	28, 31, 144, 402
HaeII	RGCGCY	1 cut(s)	402
HaeIII	GGCC	6 cut(s)	248, 276, 506, 557, 621, 635
HapII	CCGG	1 cut(s)	137
HhaI	GCGC	1 cut(s)	401
Hin1I	GRCGYC	1 cut(s)	399
Hin1II	CATG	6 cut(s)	65, 116, 211, 532, 591, 604
Hin6I	GCGC	1 cut(s)	399
HinP1I	GCGC	1 cut(s)	399
HindIII	AAGCTT	1 cut(s)	377
HinfI	GANTC	2 cut(s)	299, 752
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	3 cut(s)	98, 229, 697
Hpy166II	GTNNAC	3 cut(s)	190, 661, 668
Hpy188I	TCNGA	1 cut(s)	682
Hpy188III	TCNNGA	4 cut(s)	137, 370, 480, 647
Hpy8I	GTNNAC	3 cut(s)	190, 661, 668
HpyAV	CCTTC	5 cut(s)	40, 90, 157, 415, 784
HpyCH4III	ACNGT	1 cut(s)	665
HpyCH4V	TGCA	4 cut(s)	30, 176, 514, 661
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 173, 254
HpyF3I	CTNAG	2 cut(s)	117, 380
Hsp92I	GRCGYC	1 cut(s)	399
Hsp92II	CATG	6 cut(s)	65, 116, 211, 532, 591, 604
HspAI	GCGC	1 cut(s)	399
KasI	GGCGCC	1 cut(s)	398
Kpn2I	TCCGGA	1 cut(s)	136
Ksp22I	TGATCA	2 cut(s)	564, 609
Kzo9I	GATC	7 cut(s)	52, 133, 564, 609, 677, 830, 858
LmnI	GCTCC	2 cut(s)	287, 352
Lsp1109I	GCAGC	3 cut(s)	14, 42, 155
MaeI	CTAG	1 cut(s)	122
MaeIII	GTNAC	3 cut(s)	463, 521, 590
MalI	GATC	7 cut(s)	54, 135, 566, 611, 679, 832, 860
MbiI	CCGCTC	1 cut(s)	435
MboI	GATC	7 cut(s)	52, 133, 564, 609, 677, 830, 858
MboII	GAAGA	4 cut(s)	28, 55, 662, 866
MflI	RGATCY	4 cut(s)	133, 677, 830, 858
MhlI	GDGCHC	1 cut(s)	663
MluCI	AATT	3 cut(s)	357, 493, 739
Mly113I	GGCGCC	1 cut(s)	399
MlyI	GAGTC	1 cut(s)	761
MroI	TCCGGA	1 cut(s)	136
MseI	TTAA	1 cut(s)	865
MslI	CAYNNNNRTG	1 cut(s)	212
MspA1I	CMGCKG	1 cut(s)	27
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	675
MvaI	CCWGG	1 cut(s)	675
MwoI	GCNNNNNNNGC	3 cut(s)	113, 173, 254
NarI	GGCGCC	1 cut(s)	399
NdeII	GATC	7 cut(s)	52, 133, 564, 609, 677, 830, 858
NlaIII	CATG	6 cut(s)	65, 116, 211, 532, 591, 604
NlaIV	GGNNCC	5 cut(s)	78, 135, 400, 679, 822
NspI	RCATGY	3 cut(s)	116, 591, 604
PaeR7I	CTCGAG	1 cut(s)	478
PceI	AGGCCT	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	299
PfoI	TCCNGGA	1 cut(s)	673
PkrI	GCNGC	4 cut(s)	29, 32, 145, 403
PleI	GAGTC	1 cut(s)	760
PluTI	GGCGCC	1 cut(s)	402
PpsI	GAGTC	1 cut(s)	760
Psp6I	CCWGG	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	673
PspN4I	GGNNCC	5 cut(s)	78, 135, 400, 679, 822
PspPI	GGNCC	4 cut(s)	504, 556, 634, 821
PstI	CTGCAG	1 cut(s)	32
PsuI	RGATCY	4 cut(s)	133, 677, 830, 858
PvuII	CAGCTG	1 cut(s)	27
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	865
SatI	GCNGC	4 cut(s)	28, 31, 144, 402
Sau3AI	GATC	7 cut(s)	52, 133, 564, 609, 677, 830, 858
Sau96I	GGNCC	4 cut(s)	504, 556, 634, 821
SchI	GAGTC	1 cut(s)	761
ScrFI	CCNGG	1 cut(s)	675
SduI	GDGCHC	1 cut(s)	663
SfcI	CTRYAG	1 cut(s)	28
SfoI	GGCGCC	1 cut(s)	400
Sfr274I	CTCGAG	1 cut(s)	478
SinI	GGWCC	1 cut(s)	821
SlaI	CTCGAG	1 cut(s)	478
SmiMI	CAYNNNNRTG	1 cut(s)	212
SmlI	CTYRAG	3 cut(s)	368, 478, 797
SmoI	CTYRAG	3 cut(s)	368, 478, 797
Sse9I	AATT	3 cut(s)	357, 493, 739
SseBI	AGGCCT	1 cut(s)	276
SsiI	CCGC	4 cut(s)	402, 433, 536, 707
SspDI	GGCGCC	1 cut(s)	398
SspMI	CTAG	1 cut(s)	122
StuI	AGGCCT	1 cut(s)	276
StyD4I	CCNGG	1 cut(s)	673
StyI	CCWWGG	1 cut(s)	394
TaaI	ACNGT	1 cut(s)	665
TaqI	TCGA	5 cut(s)	479, 550, 578, 648, 695
TasI	AATT	3 cut(s)	357, 493, 739
TatI	WGTACW	1 cut(s)	327
TauI	GCSGC	1 cut(s)	404
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	1 cut(s)	865
Tru9I	TTAA	1 cut(s)	865
TseI	GCWGC	3 cut(s)	27, 30, 143
TspDTI	ATGAA	5 cut(s)	17, 236, 752, 824, 828
TspGWI	ACGGA	3 cut(s)	426, 456, 813
VneI	GTGCAC	1 cut(s)	659
VpaK11BI	GGWCC	1 cut(s)	821
XceI	RCATGY	3 cut(s)	116, 591, 604
XhoI	CTCGAG	1 cut(s)	478
XmiI	GTMKAC	1 cut(s)	667
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.