Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009602

Physical Location & Seq

Genomic Coordinates Reverse (-)

18281428 .. 18283134

Gene Structure 1707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGGATCCTACAAGTGTGCAATGGAGTTATTGAGGAAAAATCAAGTAGATTTGATAAGGTTTTTGCCCAGGATGAGATTGAGGGGGCATAGGGCTTTCCACAAGGAGGAGGTCAAGGCAGATCAGTTGCTGGCAGTAGTAAGATCAGGTTTTGCGAGTCAATCTGCTGCTCCCGGAAGCCATTTGACTAGGGGAATAGCCGGAGCTAATGGAATTCCTGTTCTATATGGAAGGTATCCCACCAGAGAGTTTATGCATGCTTCTTGGCCACAGTCACAACTCCCAAGAAACTACGGAGCAAGTACCACCATTCCTCTCTTTAGCAAATCCTTTTCATCAAAAGCTACACGGAAACAGCAACAAAGTTCATCTGAGAATAAGAAAGATGTAACTACTGTAGAGGATCCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0007275 GO:0008104 GO:0008150 GO:0008535 GO:0009791 GO:0009987 GO:0010257 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017004 GO:0017038 GO:0019866 GO:0022607 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032981 GO:0032991 GO:0033036 GO:0033108 GO:0033365 GO:0033617 GO:0034613 GO:0034622 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065003 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0090351 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIM21

Protein Analysis

138

Amino Acids

15.36

Weight (kDa)

10.32

Isoelectric Point (pI)

47.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009602)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00026
fragaria_vesca	FvH4_7g06430
malus_domestica	MD05G1185000.v1.1 MD10G1173000.v1.1
prunus_persica	Prupe.8G211200_v2.0.a1 Prupe.8G211200_v2.0.a1
pyrus_communis	pycom05g16980 pycom10g14910
rosa_chinensis	RchiOBHm_Chr6g0285911
rosa_laevigata	RLG00000012600
rosa_multiflora	Rmu_co8342957.1_g000001 Rmu_co8417589.1_g000001 Rmu_sc0004808.1_g000002
rosa_roxburghii	Rroxscaffold_7G00182620
rosa_rugosa	Rorug06G0177500 Rorug06G0177500
rosa_samantha	Rh6AG289500 Rh6BG285600 Rh6BG291300 Rh6CG292300 Rh6DG284400
rosa_wichuraiana	Rw6G024940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	13, 398, 411
AcoI	YGGCCR	1 cut(s)	266
AcsI	RAATTY	1 cut(s)	213
AfaI	GTAC	1 cut(s)	304
AfiI	CCNNNNNNNGG	1 cut(s)	106
AjnI	CCWGG	1 cut(s)	68
AloI	GAACNNNNNNTCC	2 cut(s)	204, 236
AluBI	AGCT	2 cut(s)	206, 344
AluI	AGCT	2 cut(s)	206, 344
AlwI	GGATC	3 cut(s)	13, 398, 411
AlwNI	CAGNNNCTG	1 cut(s)	130
AoxI	GGCC	1 cut(s)	266
ApeKI	GCWGC	1 cut(s)	167
ApoI	RAATTY	1 cut(s)	213
AsuC2I	CCSGG	1 cut(s)	174
BalI	TGGCCA	1 cut(s)	268
BamHI	GGATCC	2 cut(s)	5, 403
BbvI	GCAGC	1 cut(s)	154
BciT130I	CCWGG	1 cut(s)	70
BciVI	GTATCC	1 cut(s)	246
BcnI	CCSGG	1 cut(s)	174
BfaI	CTAG	1 cut(s)	189
BfmI	CTRYAG	1 cut(s)	396
BfuI	GTATCC	1 cut(s)	246
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
Bme1390I	CCNGG	2 cut(s)	70, 174
BmiI	GGNNCC	2 cut(s)	7, 405
BmrFI	CCNGG	2 cut(s)	70, 174
BpuMI	CCSGG	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse3DI	GCAATG	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	70
BseDI	CCNNGG	1 cut(s)	68
BseGI	GGATG	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMI	GCAATG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	363
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	1 cut(s)	154
BshFI	GGCC	1 cut(s)	268
BsiSI	CCGG	2 cut(s)	174, 201
BslI	CCNNNNNNNGG	1 cut(s)	106
BsnI	GGCC	1 cut(s)	268
Bsp143I	GATC	4 cut(s)	5, 121, 143, 403
BspANI	GGCC	1 cut(s)	268
BspCNI	CTCAG	1 cut(s)	364
BspLI	GGNNCC	2 cut(s)	7, 405
BspPI	GGATC	3 cut(s)	13, 398, 411
BsrDI	GCAATG	1 cut(s)	27
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	4 cut(s)	5, 121, 143, 403
Bst2UI	CCWGG	1 cut(s)	70
Bst4CI	ACNGT	2 cut(s)	273, 397
BstC8I	GCNNGC	2 cut(s)	132, 258
BstDEI	CTNAG	1 cut(s)	372
BstF5I	GGATG	1 cut(s)	78
BstKTI	GATC	4 cut(s)	8, 124, 146, 406
BstMBI	GATC	4 cut(s)	5, 121, 143, 403
BstNI	CCWGG	1 cut(s)	70
BstNSI	RCATGY	1 cut(s)	260
BstSCI	CCNGG	2 cut(s)	68, 172
BstSFI	CTRYAG	1 cut(s)	396
BstV1I	GCAGC	1 cut(s)	154
BstX2I	RGATCY	2 cut(s)	5, 403
BstYI	RGATCY	2 cut(s)	5, 403
BsuI	GTATCC	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	268
BtsCI	GGATG	1 cut(s)	78
Cac8I	GCNNGC	2 cut(s)	132, 258
CaiI	CAGNNNCTG	1 cut(s)	130
Csp6I	GTAC	1 cut(s)	303
CviAII	CATG	1 cut(s)	257
CviJI	RGCY	6 cut(s)	95, 180, 200, 206, 268, 344
CviKI_1	RGCY	6 cut(s)	95, 180, 200, 206, 268, 344
CviQI	GTAC	1 cut(s)	303
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	4 cut(s)	7, 123, 145, 405
DpnII	GATC	4 cut(s)	5, 121, 143, 403
EaeI	YGGCCR	1 cut(s)	266
EcoRI	GAATTC	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	68
EcoT22I	ATGCAT	1 cut(s)	258
FaeI	CATG	1 cut(s)	260
FaiI	YATR	5 cut(s)	90, 226, 228, 254, 258
FatI	CATG	1 cut(s)	256
Fnu4HI	GCNGC	1 cut(s)	168
FokI	GGATG	1 cut(s)	85
Fsp4HI	GCNGC	1 cut(s)	168
FspBI	CTAG	1 cut(s)	189
GluI	GCNGC	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	268
HapII	CCGG	2 cut(s)	174, 201
Hin1II	CATG	1 cut(s)	260
HinfI	GANTC	1 cut(s)	157
HpaII	CCGG	2 cut(s)	174, 201
Hpy188I	TCNGA	1 cut(s)	373
HpyAV	CCTTC	1 cut(s)	225
HpyCH4III	ACNGT	2 cut(s)	273, 397
HpyCH4V	TGCA	2 cut(s)	20, 256
HpyF3I	CTNAG	1 cut(s)	372
Hsp92II	CATG	1 cut(s)	260
Kzo9I	GATC	4 cut(s)	5, 121, 143, 403
LmnI	GCTCC	3 cut(s)	175, 203, 296
LpnPI	CCDG	8 cut(s)	55, 82, 116, 132, 187, 214, 231, 256
Lsp1109I	GCAGC	1 cut(s)	154
MaeI	CTAG	1 cut(s)	189
MaeIII	GTNAC	2 cut(s)	273, 388
MalI	GATC	4 cut(s)	7, 123, 145, 405
MboI	GATC	4 cut(s)	5, 121, 143, 403
MflI	RGATCY	2 cut(s)	5, 403
MlsI	TGGCCA	1 cut(s)	268
MluCI	AATT	1 cut(s)	213
MluNI	TGGCCA	1 cut(s)	268
MlyI	GAGTC	1 cut(s)	166
MnlI	CCTC	6 cut(s)	27, 75, 100, 103, 324, 394
Mox20I	TGGCCA	1 cut(s)	268
Mph1103I	ATGCAT	1 cut(s)	258
MscI	TGGCCA	1 cut(s)	268
Msp20I	TGGCCA	1 cut(s)	268
MspI	CCGG	2 cut(s)	174, 201
MspR9I	CCNGG	2 cut(s)	70, 174
MvaI	CCWGG	1 cut(s)	70
NciI	CCSGG	1 cut(s)	174
NdeII	GATC	4 cut(s)	5, 121, 143, 403
NlaIII	CATG	1 cut(s)	260
NlaIV	GGNNCC	2 cut(s)	7, 405
NmuCI	GTSAC	1 cut(s)	273
NsiI	ATGCAT	1 cut(s)	258
NspI	RCATGY	1 cut(s)	260
PaeI	GCATGC	1 cut(s)	260
PfoI	TCCNGGA	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	169
PleI	GAGTC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	2 cut(s)	7, 405
PstNI	CAGNNNCTG	1 cut(s)	130
PsuI	RGATCY	2 cut(s)	5, 403
RsaI	GTAC	1 cut(s)	304
RsaNI	GTAC	1 cut(s)	303
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	4 cut(s)	5, 121, 143, 403
SchI	GAGTC	1 cut(s)	166
ScrFI	CCNGG	2 cut(s)	70, 174
SetI	ASST	6 cut(s)	62, 114, 151, 208, 236, 346
SfcI	CTRYAG	1 cut(s)	396
SphI	GCATGC	1 cut(s)	260
Sse9I	AATT	1 cut(s)	213
SspMI	CTAG	1 cut(s)	189
StyD4I	CCNGG	2 cut(s)	68, 172
TaaI	ACNGT	2 cut(s)	273, 397
TasI	AATT	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	273
TseI	GCWGC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	273
TspDTI	ATGAA	2 cut(s)	324, 357
TspGWI	ACGGA	2 cut(s)	309, 364
XapI	RAATTY	1 cut(s)	213
XceI	RCATGY	1 cut(s)	260
XspI	CTAG	1 cut(s)	189
Zsp2I	ATGCAT	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.