Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005064

Physical Location & Seq

Genomic Coordinates Forward (+)

20708782 .. 20712530

Gene Structure 3749 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

ATGTGGATGAGAACAACAGACCCTATAAGAATATCCGAATCAAACATACTTACATATTGGATGATCCTTTTGATCGATCCTTCACAACTAGCTGAGTTAATTCCCGACGCTTCCCCTGAAGGAAAACCAAAGGACGAGGTTGATGATAATGTGCGGCTTGAAGATGACTGGGTTCCTCTGGATGAACAACTAAGTCCACTAGAACTTGAAGAGCGTCTTCGTGCCAAAGACGCACATTCCAGTGCGGTTGTACTTGAGAGTATTGGGGATATTCCTGATGTTGAGATAAAACCTCCCGACAATGTTCTCTTTGTTTGTAAATTGAATCCAGTCACTGAAGATGAGGACTTGCACACAATTTTTTCGCGTTTTGGAACTGTTCAAGCGGCTGATATAATCCGTGATTTCAAGACTGGAGATAGCTTATGCTATGCATTCATAGAATTTGAGACCAGAGAAGCATGCGAACAAGCATATTTTAAGATGGATAATGCTTTGATTGATGACCGGAGAATACACGTGGATTTTAGTCAAAGTGTTGCAAAACTGTGGTCCCAGTACAGGCGCGTGATTGGGAAAGATCAAAAGGGCAAAGTATGTGCAAAGGGTGCTTCAAATGTGGTGCACTTGATCACATTGCCAAGGATTGCACATTTTGACATTTTCGTCGATCCTGCCAACACACAACAACCTCAAAAGTACATATTGAAGGATGATAATGGACAGCGTGGTGGCGGCAAGAACTCTAGTTATGATATGGTATTTGATGGAGACACTCCGGAAATTCCAAGGCAAGAAAAGAGAAGTCAAGGTCACAATAATGACGGCGGAGTCGAGAAACAAAGGATGAATAGGCGGAGTTCCGAGGAACCGAGGCATAGGGATCGAGAAAACAAAGACTCAAGTTATAGGGATAGGCACAGTGACAGAAGTAGAGGGTACAGAGAGGATTCAAGTCAAGACGGTAAAGCAAATCGATCCAGTGGAAGTAGAAGTGGTCAAGATCGTCTTGAAGAGGGAAGGGATAGAGATAGGCATAAGGACGGACAAAGAGACACAGATGACAAGGCAGATCAGCGTGAGAGCAGAAAGAGAGATGCAGATGATGGTATCTATGCAGACAGGAGGGGTGATAAAGATTACAGAAAGAGGAGTACAGACAGTGATAGAGAGAATCACAAGGAGAGGCAGAGAAACATAGATAATAAGGTCGATCAGCGGGAGAGTGGAAAGAGATATGCAGATGATGGTGAGAGGGGTGGCGTAAATTACAGAAAGAGGAGTGCGGATAGTGATAGACTAGCGGGACGGAGTAGTGACAGTGGAGATTATAGAAAGAGCAGTGTAGAGAGGAGGGATGAAACAGACTATAAAAAGAGACATGTAGATGGTGAACGTCGAGACAAGAGAGACGACCGAGTCCATAAGAAAAGAAGTGCAGATGTTGATGCCCATAGAGGTACAAGGGAAAGAGAACATAGAAGGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0001932 GO:0003674 GO:0003676 GO:0003723 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031399 GO:0032268 GO:0036211 GO:0042325 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901407 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase RRM_1 zf-CCHC

Protein Analysis

497

Amino Acids

57.62

Weight (kDa)

6.33

Isoelectric Point (pI)

56.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	103 - 173	2.9e-15	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53720 AT1G53720
fragaria_vesca	FvH4_3g15530 FvH4_3g15530 FvH4_3g15530 FvH4_3g21900 FvH4_4g19390
malus_domestica	MD05G1222400.v1.1 MD10G1204000.v1.1
prunus_persica	Prupe.4G137900_v2.0.a1
pyrus_communis	pycom05g20510 pycom10g17460 pycom10g17470
rosa_chinensis	RchiOBHm_Chr5g0026161
rosa_laevigata	RLG00000032908
rosa_multiflora	Rmu_sc0009679.1_g000004
rosa_roxburghii	Rroxscaffold_1G00053040 Rroxscaffold_1G00053150
rosa_rugosa	Rorug05G0091100 Rorug05G0091200 Rorug05G0091300 Rorug05G0091400 Rorug05G0092300
rosa_samantha	Rh5AG184100 Rh5BG180900 Rh5BG182100 Rh5CG199900 Rh5CG201500 Rh5DG182500
rosa_wichuraiana	Rw5G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	665, 830, 1418
AccII	CGCG	2 cut(s)	367, 567
AccIII	TCCGGA	1 cut(s)	778
AciI	CCGC	9 cut(s)	154, 245, 386, 735, 828, 856, 1219, 1286, 1304
AclWI	GGATC	5 cut(s)	58, 71, 665, 891, 972
AcsI	RAATTY	2 cut(s)	443, 783
AcuI	CTGAAG	2 cut(s)	138, 357
AcvI	CACGTG	1 cut(s)	520
AfaI	GTAC	6 cut(s)	252, 560, 701, 941, 1156, 1462
AfiI	CCNNNNNNNGG	1 cut(s)	561
AflIII	ACRYGT	2 cut(s)	517, 1381
AgsI	TTSAA	9 cut(s)	161, 209, 325, 383, 409, 615, 709, 954, 1013
AluBI	AGCT	2 cut(s)	92, 423
AluI	AGCT	2 cut(s)	92, 423
Alw21I	GWGCWC	1 cut(s)	627
Alw26I	GTCTC	6 cut(s)	443, 765, 1047, 1372, 1395, 1404
Alw44I	GTGCAC	1 cut(s)	623
AlwI	GGATC	5 cut(s)	58, 71, 665, 891, 972
AlwNI	CAGNNNCTG	1 cut(s)	335
Aor13HI	TCCGGA	1 cut(s)	778
ApaLI	GTGCAC	1 cut(s)	623
ApoI	RAATTY	2 cut(s)	443, 783
ArsI	GACNNNNNNTTYG	2 cut(s)	536, 568
AspLEI	GCGC	1 cut(s)	567
AspS9I	GGNCC	1 cut(s)	552
AsuHPI	GGTGA	3 cut(s)	1142, 1262, 1403
AvaII	GGWCC	1 cut(s)	552
BaeGI	GKGCMC	1 cut(s)	627
BbrPI	CACGTG	1 cut(s)	520
BbsI	GAAGAC	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	627
BccI	CCATC	5 cut(s)	478, 761, 1100, 1241, 1382
BceAI	ACGGC	1 cut(s)	841
BcgI	CGANNNNNNTGC	2 cut(s)	866, 900
BclI	TGATCA	1 cut(s)	630
BcoDI	GTCTC	6 cut(s)	443, 765, 1047, 1372, 1395, 1404
BfaI	CTAG	4 cut(s)	89, 200, 747, 1301
BisI	GCNGC	3 cut(s)	155, 387, 736
BlsI	GCNGC	3 cut(s)	156, 388, 737
Bme18I	GGWCC	1 cut(s)	552
BmgT120I	GGNCC	1 cut(s)	552
BmiI	GGNNCC	3 cut(s)	174, 554, 870
BmrI	ACTGGG	2 cut(s)	178, 550
BmsI	GCATC	2 cut(s)	1087, 1438
BmuI	ACTGGG	2 cut(s)	178, 550
BpiI	GAAGAC	1 cut(s)	209
BpmI	CTGGAG	1 cut(s)	435
BpuEI	CTTGAG	2 cut(s)	275, 886
Bsa29I	ATCGAT	2 cut(s)	75, 976
BsaAI	YACGTR	1 cut(s)	520
BsaI	GGTCTC	1 cut(s)	443
BsaJI	CCNNGG	4 cut(s)	641, 788, 864, 872
BsaWI	WCCGGW	2 cut(s)	507, 778
Bsc4I	CCNNNNNNNGG	1 cut(s)	561
Bse1I	ACTGG	6 cut(s)	173, 240, 329, 418, 556, 981
Bse3DI	GCAATG	1 cut(s)	635
BseAI	TCCGGA	1 cut(s)	778
BseCI	ATCGAT	2 cut(s)	75, 976
BseDI	CCNNGG	4 cut(s)	641, 788, 864, 872
BseGI	GGATG	6 cut(s)	12, 66, 187, 718, 852, 1363
BseLI	CCNNNNNNNGG	1 cut(s)	561
BseMI	GCAATG	1 cut(s)	635
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	6 cut(s)	173, 240, 329, 418, 556, 981
BseRI	GAGGAG	3 cut(s)	1165, 1294, 1366
BseSI	GKGCMC	1 cut(s)	627
BsgI	GTGCAG	1 cut(s)	1458
Bsh1236I	CGCG	2 cut(s)	367, 567
Bsh1285I	CGRYCG	1 cut(s)	1417
BshVI	ATCGAT	2 cut(s)	75, 976
BsiEI	CGRYCG	1 cut(s)	1417
BsiHKAI	GWGCWC	1 cut(s)	627
BsiSI	CCGG	2 cut(s)	508, 779
BslFI	GGGAC	2 cut(s)	538, 1320
BslI	CCNNNNNNNGG	1 cut(s)	561
BsmAI	GTCTC	6 cut(s)	443, 765, 1047, 1372, 1395, 1404
BsmBI	CGTCTC	1 cut(s)	1404
BsmFI	GGGAC	2 cut(s)	538, 1320
BsmI	GAATGC	1 cut(s)	434
Bso31I	GGTCTC	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	627
Bsp13I	TCCGGA	1 cut(s)	778
BspACI	CCGC	9 cut(s)	154, 245, 386, 735, 828, 856, 1219, 1286, 1304
BspCNI	CTCAG	1 cut(s)	85
BspDI	ATCGAT	2 cut(s)	75, 976
BspEI	TCCGGA	1 cut(s)	778
BspFNI	CGCG	2 cut(s)	367, 567
BspLI	GGNNCC	3 cut(s)	174, 554, 870
BspPI	GGATC	5 cut(s)	58, 71, 665, 891, 972
BspQI	GCTCTTC	1 cut(s)	204
BspTNI	GGTCTC	1 cut(s)	443
BsrDI	GCAATG	1 cut(s)	635
BsrI	ACTGG	6 cut(s)	173, 240, 329, 418, 556, 981
BssECI	CCNNGG	4 cut(s)	641, 788, 864, 872
BssT1I	CCWWGG	2 cut(s)	641, 788
Bst4CI	ACNGT	6 cut(s)	379, 549, 923, 965, 1163, 1322
Bst6I	CTCTTC	2 cut(s)	204, 1008
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstBAI	YACGTR	1 cut(s)	520
BstC8I	GCNNGC	1 cut(s)	463
BstDEI	CTNAG	2 cut(s)	93, 191
BstF5I	GGATG	6 cut(s)	12, 66, 187, 718, 852, 1363
BstFNI	CGCG	2 cut(s)	367, 567
BstHHI	GCGC	1 cut(s)	567
BstMAI	GTCTC	6 cut(s)	443, 765, 1047, 1372, 1395, 1404
BstMCI	CGRYCG	1 cut(s)	1417
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 608
BstNSI	RCATGY	2 cut(s)	465, 1385
BstSLI	GKGCMC	1 cut(s)	627
BstUI	CGCG	2 cut(s)	367, 567
BstV2I	GAAGAC	1 cut(s)	209
Bsu15I	ATCGAT	2 cut(s)	75, 976
BsuTUI	ATCGAT	2 cut(s)	75, 976
BtsCI	GGATG	6 cut(s)	12, 66, 187, 718, 852, 1363
BtsI	GCAGTG	1 cut(s)	1348
BtsIMutI	CAGTG	7 cut(s)	247, 333, 928, 988, 1168, 1327, 1348
Cac8I	GCNNGC	1 cut(s)	463
CaiI	CAGNNNCTG	1 cut(s)	335
CfoI	GCGC	1 cut(s)	567
Cfr13I	GGNCC	1 cut(s)	552
ClaI	ATCGAT	2 cut(s)	75, 976
CseI	GACGC	3 cut(s)	116, 203, 239
Csp6I	GTAC	6 cut(s)	251, 559, 700, 940, 1155, 1461
CviAII	CATG	2 cut(s)	462, 1382
CviJI	RGCY	4 cut(s)	92, 157, 389, 423
CviKI_1	RGCY	4 cut(s)	92, 157, 389, 423
CviQI	GTAC	6 cut(s)	251, 559, 700, 940, 1155, 1461
DdeI	CTNAG	2 cut(s)	93, 191
DrdI	GACNNNNNNGTC	3 cut(s)	665, 830, 1418
DseDI	GACNNNNNNGTC	3 cut(s)	665, 830, 1418
Eam1104I	CTCTTC	2 cut(s)	204, 1008
EarI	CTCTTC	2 cut(s)	204, 1008
EciI	GGCGGA	2 cut(s)	843, 871
Eco130I	CCWWGG	2 cut(s)	641, 788
Eco31I	GGTCTC	1 cut(s)	443
Eco47I	GGWCC	1 cut(s)	552
Eco57I	CTGAAG	2 cut(s)	138, 357
Eco72I	CACGTG	1 cut(s)	520
EcoT14I	CCWWGG	2 cut(s)	641, 788
EcoT22I	ATGCAT	1 cut(s)	436
ErhI	CCWWGG	2 cut(s)	641, 788
Esp3I	CGTCTC	1 cut(s)	1404
FaeI	CATG	2 cut(s)	465, 1385
FalI	AAGNNNNNCTT	4 cut(s)	201, 233, 993, 1025
FaqI	GGGAC	2 cut(s)	538, 1320
FatI	CATG	2 cut(s)	461, 1381
FauI	CCCGC	2 cut(s)	1212, 1297
FbaI	TGATCA	1 cut(s)	630
Fnu4HI	GCNGC	3 cut(s)	155, 387, 736
FokI	GGATG	6 cut(s)	19, 73, 194, 725, 859, 1370
Fsp4HI	GCNGC	3 cut(s)	155, 387, 736
FspBI	CTAG	4 cut(s)	89, 200, 747, 1301
GlaI	GCGC	1 cut(s)	566
GluI	GCNGC	3 cut(s)	155, 387, 736
GsuI	CTGGAG	1 cut(s)	435
HapII	CCGG	2 cut(s)	508, 779
HgaI	GACGC	3 cut(s)	116, 203, 239
HhaI	GCGC	1 cut(s)	567
Hin1II	CATG	2 cut(s)	465, 1385
Hin6I	GCGC	1 cut(s)	565
HinP1I	GCGC	1 cut(s)	565
HinfI	GANTC	7 cut(s)	38, 325, 831, 899, 950, 1174, 1419
HpaII	CCGG	2 cut(s)	508, 779
HphI	GGTGA	3 cut(s)	1142, 1262, 1403
Hpy166II	GTNNAC	3 cut(s)	197, 625, 1394
Hpy188I	TCNGA	2 cut(s)	37, 865
Hpy8I	GTNNAC	3 cut(s)	197, 625, 1394
Hpy99I	CGWCG	3 cut(s)	110, 671, 1401
HpyAV	CCTTC	5 cut(s)	90, 113, 703, 1014, 1476
HpyCH4III	ACNGT	6 cut(s)	379, 549, 923, 965, 1163, 1322
HpyCH4IV	ACGT	2 cut(s)	519, 1396
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 608
HpyF3I	CTNAG	2 cut(s)	93, 191
HpySE526I	ACGT	2 cut(s)	519, 1396
Hsp92II	CATG	2 cut(s)	465, 1385
HspAI	GCGC	1 cut(s)	565
Kpn2I	TCCGGA	1 cut(s)	778
Ksp22I	TGATCA	1 cut(s)	630
LguI	GCTCTTC	1 cut(s)	204
LweI	GCATC	2 cut(s)	1087, 1438
MaeI	CTAG	4 cut(s)	89, 200, 747, 1301
MaeII	ACGT	2 cut(s)	519, 1396
MaeIII	GTNAC	4 cut(s)	331, 812, 923, 1316
MboII	GAAGA	5 cut(s)	173, 209, 221, 350, 1025
MhlI	GDGCHC	1 cut(s)	627
MluCI	AATT	6 cut(s)	99, 320, 357, 443, 783, 1267
MlyI	GAGTC	3 cut(s)	840, 893, 1428
Mph1103I	ATGCAT	1 cut(s)	436
MroI	TCCGGA	1 cut(s)	778
MseI	TTAA	2 cut(s)	98, 480
MslI	CAYNNNNRTG	3 cut(s)	240, 819, 1386
MspA1I	CMGCKG	1 cut(s)	1219
MspI	CCGG	2 cut(s)	508, 779
Mva1269I	GAATGC	1 cut(s)	434
MvnI	CGCG	2 cut(s)	367, 567
MwoI	GCNNNNNNNGC	2 cut(s)	230, 608
NlaIII	CATG	2 cut(s)	465, 1385
NlaIV	GGNNCC	3 cut(s)	174, 554, 870
NmuCI	GTSAC	4 cut(s)	331, 812, 923, 1316
NsiI	ATGCAT	1 cut(s)	436
NspI	RCATGY	2 cut(s)	465, 1385
PaeI	GCATGC	1 cut(s)	465
PciI	ACATGT	1 cut(s)	1381
PciSI	GCTCTTC	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	1 cut(s)	831
PctI	GAATGC	1 cut(s)	434
PfeI	GAWTC	4 cut(s)	38, 325, 950, 1174
PflFI	GACNNNGTC	1 cut(s)	1418
PkrI	GCNGC	3 cut(s)	156, 388, 737
PleI	GAGTC	3 cut(s)	839, 893, 1427
PmaCI	CACGTG	1 cut(s)	520
PmlI	CACGTG	1 cut(s)	520
PpsI	GAGTC	3 cut(s)	839, 893, 1427
Ppu21I	YACGTR	1 cut(s)	520
PscI	ACATGT	1 cut(s)	1381
PspCI	CACGTG	1 cut(s)	520
PspN4I	GGNNCC	3 cut(s)	174, 554, 870
PspPI	GGNCC	1 cut(s)	552
PstNI	CAGNNNCTG	1 cut(s)	335
PsyI	GACNNNGTC	1 cut(s)	1418
RsaI	GTAC	6 cut(s)	252, 560, 701, 941, 1156, 1462
RsaNI	GTAC	6 cut(s)	251, 559, 700, 940, 1155, 1461
RseI	CAYNNNNRTG	3 cut(s)	240, 819, 1386
SapI	GCTCTTC	1 cut(s)	204
SaqAI	TTAA	2 cut(s)	98, 480
SatI	GCNGC	3 cut(s)	155, 387, 736
Sau96I	GGNCC	1 cut(s)	552
SchI	GAGTC	3 cut(s)	840, 893, 1428
SduI	GDGCHC	1 cut(s)	627
SfaNI	GCATC	2 cut(s)	1087, 1438
SinI	GGWCC	1 cut(s)	552
SmiMI	CAYNNNNRTG	3 cut(s)	240, 819, 1386
SmlI	CTYRAG	2 cut(s)	254, 901
SmoI	CTYRAG	2 cut(s)	254, 901
SphI	GCATGC	1 cut(s)	465
Sse9I	AATT	6 cut(s)	99, 320, 357, 443, 783, 1267
SsiI	CCGC	9 cut(s)	154, 245, 386, 735, 828, 856, 1219, 1286, 1304
SspMI	CTAG	4 cut(s)	89, 200, 747, 1301
StyI	CCWWGG	2 cut(s)	641, 788
TaaI	ACNGT	6 cut(s)	379, 549, 923, 965, 1163, 1322
TaiI	ACGT	2 cut(s)	522, 1399
TaqI	TCGA	7 cut(s)	75, 669, 834, 886, 976, 1212, 1399
TaqII	GACCGA	1 cut(s)	1431
TasI	AATT	6 cut(s)	99, 320, 357, 443, 783, 1267
TatI	WGTACW	4 cut(s)	250, 558, 699, 1154
TauI	GCSGC	3 cut(s)	157, 389, 738
TfiI	GAWTC	4 cut(s)	38, 325, 950, 1174
Tru1I	TTAA	2 cut(s)	98, 480
Tru9I	TTAA	2 cut(s)	98, 480
TscAI	CASTG	7 cut(s)	247, 340, 928, 988, 1168, 1327, 1348
TseFI	GTSAC	4 cut(s)	331, 812, 923, 1316
Tsp45I	GTSAC	4 cut(s)	331, 812, 923, 1316
TspDTI	ATGAA	4 cut(s)	198, 427, 863, 1374
TspGWI	ACGGA	3 cut(s)	389, 1059, 1324
TspRI	CASTG	7 cut(s)	247, 340, 928, 988, 1168, 1327, 1348
Tth111I	GACNNNGTC	1 cut(s)	1418
VneI	GTGCAC	1 cut(s)	623
VpaK11BI	GGWCC	1 cut(s)	552
XapI	RAATTY	2 cut(s)	443, 783
XceI	RCATGY	2 cut(s)	465, 1385
XspI	CTAG	4 cut(s)	89, 200, 747, 1301
Zsp2I	ATGCAT	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.