pycom10g17620

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0013464
Physical Location & Seq
Reverse (-)
20856826 .. 20859636
2811 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2811 bp
ATGTACTCGAAGTTTGGTCGTATTGGTTATGCAAGGTATGTGTTTGATAATATTCCTGAGAGAAATGACGCTTCTTGGAACACGATGATATCGAGTTATGTACGAGTGGGGTTGTATTCCGAATCGATTGGATTCTTCTGCGAAATGATTGGCTGCGGTGTTAAGCCAAGCGGGTTTGTCATTGCTAGTTTGATGACTGCGTGTGATAAGTCTGCTCGTAGGTTTAGTGAAGGGTTGCAGGTCCATGGTTTTGTGGTTAAAATTGGTTTGTTTTGTGATGTCTTTGTTGGGACTTCGCTTTTGCACTTCTATGGCACCTATGGTTTTGTGTCTTCTGCTCAAAAGATTTTTGAGGAGATGCCGGAGAAGAATGTGGTTACTTGGACTTCTTTGATTGTTGGCCGTTCAACTAATAGAGATTCGGAAGAAGTTATAAACATATATAAGCGTATGATATATGAAGGAGTGTGTTGCAATGATAACACATTTGCTATAGTCATTAGTACTTGTGGGATGCTAGGGAATGAACTGTTAGGTCATCAAGTTCTTGGTCATGTCGTGAAACTTGGACTAGAGACTAGTGTTTCTGTAGCAAACTCTCTCATATCCATGTATGGTAGCTGCGGAAATGTAGAAGCGGCCTGCTACGTCTTTGATCAGATGGATGAGCGTGATATAATCTCATGGAATTCGATTATTTCTGCAGATGCACAAAATGGGCTTTGCGAAGAATCATTAAGGCACTTTCACTGTATGCGGAGTGTTAATAAAGAGGTGAATTCCACAACGCTTTCGACATTGTTGACAGTCTCTGGTTCCTCAGAGAAACTGAAGTGGGGCAGTGGAATTCATGGCTTAGTTGTAAAACTAGGGTTGGAGTCAAATGTCTGTGTTTGCAATACTCTTTTAAGTATGTATTCGGAGGCTGGAAGGTCCAAAGATGCTGAGTTAGTTTTCCAAAGAATGATAGAGAAGGATATAATCTCATGGAACTCGATGTTAGCATGCTATGTGCAGAATGATGAGTACCAAAATGCCTTGGAACTTTTCTCTGAAATGCTTCGGATGAGAAAACCAGTAAATTATGTGACTCTAACAAGTGCACTATCTGCTTGTCCGAACCCTGAATTTCTCATTGAAGGCAAGATTCTTCATGCTCTTGCAGTCTTTGTAGGCCTACAAGACAATCTGATAATTGGCAATGCACTGGTTACAATGTATGGCAAGTTTGGTATGATGGTTGAAGCAGAAAAGGTGCTGCAAATAATGCCCAACCGAGATCAAGTTACTTGGAATGCCCTCATAGGTGGTTACGCTGAGAGCAAAGAACCAAATGAGGCAATAAAAGCTTTCAAGTTCATGAGAGAAGAAGGAACTCCAGCAAACTACATTACAATAATCAATGTCCTTGGTGCTTTTCTGACTCCTGGCGATCTTCTCAAACATGGAATGCCCATCCATGCGCATATAGTTCTAACAGGATTTGATTCGGACAAGCATGTGCAGAGTACCCTCATAACAATGTATGCTAAGTGTGGTGATTTAAATTCAAGTAATTCCATATTCAATGGATTAGCTTTCAAGAACTCTATCGCATGGAATGCGCTCATATCTGCAAATGCTAATCATGGCTTAGAGGAAGCTTTGAAACTTGTAGTGATGATGAGAAAAGCTGGAGTGAACTTAGATCAGTTCAGCCTTTCTGTGGCACTTTCTGTTAGTGCAGACCTGGCTATGTTGGAGGAAGGCGAACAACTTCATGCCTTGGTGGTTAAGCTTGGTTTTGACTCAGACAATTACGTTACAAATGCTGCCATGGATATGTATGGAAAATGCGGAAATATGAAAGATGTTTTGAAATTACTTCCTTTGCCAACCAGCAGATCACGATTATCATGGAACATTTTGATATCGTCTTATGCCAAACATGGGTGTTTCCCGAAGGCTAGGGAAGCTTTTCATGAAATGCTAAATCTTGGCGTGAAACCAGATCATGTTACCTTTGTTTCACTTCTGTCTGCTTGCAGTCATGGGGGTCTGGTGGATGATGGTCTTGCGTACTACAATTCAATGACCACAGAGTTTGGCGTCCCACCAGGAATAGAGCATTGTGTGTGCATGATTGATCTTCTTGGACGATCTGGAAGGCTTGCTGAAGCTGAAAATTTCATTAAAGGAATGGTTGTCCCGCCAAATGACCTTGTGTGGCGGAGCTTGCTGGCTGCATGTAAAATCCATCGTAATGTGGAGTTAGCGAGGAAAGCTGCAGAACATCTCCTAGAACTAGATCCATCGGACGATTCAGCCTATGTTCTTTTCTCAAATGTATGTGCAACTACTGGTAGATGGGAGGAAGTAGAGAACGTAAGGAGGCAGATGGGATCGAGAAACATAACGAAGAAGCCTGCGTGCAGTTGGGTCAAGTTGAAAACCGAGGTAAGTAAATTTGGGATGGGAGAGCAGTCCCATCCACAGACAGAGCAAATTTATGCCAAGTTGGGAGAGCTCATGAAGATGATTAGAGAAGCAGGTTATGTCCCGGATACCAGCTATGCACTGCAGGATACAGATGAAGAACAGAAGGAACAAAATCTTTGGAACCACAGTGAGAGAATCGCCCTTGCTTTCGCATTGATCAATACTCCAGAAGGTTCACCAGTTAAGGTTTTCAAGAACCTTCGTGTCTGTGGCGATTGCCATTCTGTCTACAAGCATGTTAGTGCAGTAGTCGGGCAGAAAATCATATTGAGAGATCCTTACCGGTTTCACCATTTCAGCGACGGCAAGTGTTCTTGTTCTGACTATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

937

Amino Acids

103.83

Weight (kDa)

6.01

Isoelectric Point (pI)

38.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 25 - 54 6.2e-07 PPR repeat
PPR_2 PF13041 123 - 170 2.1e-06 PPR repeat family
PPR_2 PF13041 325 - 372 1e-07 PPR repeat family
PPR PF01535 328 - 356 3.3e-06 PPR repeat
PPR_2 PF13041 427 - 466 2.9e-07 PPR repeat family
PPR PF01535 429 - 458 5.8e-06 PPR repeat
PPR_2 PF13041 632 - 676 7e-11 PPR repeat family
PPR PF01535 632 - 661 4.3e-07 PPR repeat
E_motif PF20431 746 - 807 1.3e-22 E motif
DYW_deaminase PF14432 844 - 936 2.8e-40 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16480 AT1G16480
fragaria_vesca FvH4_3g15200
malus_domestica MD10G1206400.v1.1
prunus_persica Prupe.4G135900_v2.0.a1
pyrus_communis pycom10g17620
rosa_chinensis RchiOBHm_Chr5g0025641
rosa_laevigata RLG00000032854
rosa_multiflora Rmu_sc0002137.1_g000002 Rmu_sc0014484.1_g000002
rosa_roxburghii Rroxscaffold_1G00053530 Rroxscaffold_1G00054190
rosa_rugosa Rorug05G0087400
rosa_samantha Rh5AG179200 Rh5BG178300 Rh5CG195900 Rh5DG177500
rosa_wichuraiana Rw5G016270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 434
Acc16I TGCGCA 1 cut(s) 1464
Acc36I ACCTGC 2 cut(s) 229, 2519
AccB1I GGYRCC 1 cut(s) 314
AccI GTMKAC 1 cut(s) 2706
AciI CCGC 8 cut(s) 156, 171, 624, 638, 757, 1836, 2189, 2209
AclWI GGATC 3 cut(s) 2282, 2389, 2747
AcoI YGGCCR 1 cut(s) 400
AcsI RAATTY 8 cut(s) 688, 778, 846, 1127, 1546, 2164, 2444, 2484
AcuI CTGAAG 2 cut(s) 851, 2175
AcyI GRCGYC 1 cut(s) 2088
AfaI GTAC 6 cut(s) 5, 102, 505, 1028, 1510, 2060
AfiI CCNNNNNNNGG 2 cut(s) 1705, 1929
AgeI ACCGGT 1 cut(s) 2760
AhlI ACTAGT 1 cut(s) 578
AjnI CCWGG 3 cut(s) 1426, 1728, 2095
Alw21I GWGCWC 2 cut(s) 1105, 2508
Alw26I GTCTC 2 cut(s) 569, 814
Alw44I GTGCAC 1 cut(s) 1101
AlwI GGATC 3 cut(s) 2282, 2389, 2747
AlwNI CAGNNNCTG 1 cut(s) 812
AoxI GGCC 3 cut(s) 400, 639, 1174
ApaLI GTGCAC 1 cut(s) 1101
ApeKI GCWGC 6 cut(s) 153, 621, 1258, 1811, 2222, 2264
ApoI RAATTY 8 cut(s) 688, 778, 846, 1127, 1546, 2164, 2444, 2484
ArsI GACNNNNNNTTYG 2 cut(s) 283, 315
AsiGI ACCGGT 1 cut(s) 2760
Asp700I GAANNNNTTC 3 cut(s) 1059, 1755, 1956
AspLEI GCGC 2 cut(s) 1465, 1606
AspS9I GGNCC 2 cut(s) 241, 933
AsuC2I CCSGG 1 cut(s) 2540
AsuHPI GGTGA 4 cut(s) 787, 1550, 2646, 2759
AvaII GGWCC 2 cut(s) 241, 933
BaeGI GKGCMC 1 cut(s) 1105
BanI GGYRCC 1 cut(s) 314
BanII GRGCYC 1 cut(s) 2508
BbsI GAAGAC 1 cut(s) 324
Bbv12I GWGCWC 2 cut(s) 1105, 2508
BbvI GCAGC 6 cut(s) 140, 608, 1245, 1798, 2209, 2251
BceAI ACGGC 2 cut(s) 387, 2797
BciT130I CCWGG 3 cut(s) 1428, 1730, 2097
BciVI GTATCC 2 cut(s) 2536, 2557
BclI TGATCA 2 cut(s) 655, 2634
BcnI CCSGG 1 cut(s) 2540
BcoDI GTCTC 2 cut(s) 569, 814
BcuI ACTAGT 1 cut(s) 578
BfaI CTAG 8 cut(s) 186, 518, 572, 579, 869, 1947, 2279, 2285
BfmI CTRYAG 5 cut(s) 492, 588, 702, 2265, 2558
BfuAI ACCTGC 2 cut(s) 229, 2519
BfuI GTATCC 2 cut(s) 2536, 2557
BisI GCNGC 7 cut(s) 154, 622, 639, 1259, 1812, 2223, 2265
BlsI GCNGC 7 cut(s) 155, 623, 640, 1260, 1813, 2224, 2266
BmcAI AGTACT 1 cut(s) 505
Bme1390I CCNGG 4 cut(s) 1428, 1730, 2097, 2540
Bme18I GGWCC 2 cut(s) 241, 933
BmgT120I GGNCC 2 cut(s) 241, 933
BmiI GGNNCC 3 cut(s) 316, 817, 2600
BmrFI CCNGG 4 cut(s) 1428, 1730, 2097, 2540
BmsI GCATC 4 cut(s) 348, 504, 697, 931
BpiI GAAGAC 1 cut(s) 324
BpmI CTGGAG 3 cut(s) 1362, 1695, 2628
BpuMI CCSGG 1 cut(s) 2540
Bsa29I ATCGAT 1 cut(s) 125
BsaHI GRCGYC 1 cut(s) 2088
BsaJI CCNNGG 6 cut(s) 244, 1038, 1408, 1764, 1815, 2433
BsaWI WCCGGW 1 cut(s) 2760
Bsc4I CCNNNNNNNGG 2 cut(s) 1705, 1929
Bse118I RCCGGY 1 cut(s) 2760
Bse1I ACTGG 4 cut(s) 1076, 1212, 2344, 2657
Bse3DI GCAATG 3 cut(s) 180, 481, 1207
BseBI CCWGG 3 cut(s) 1428, 1730, 2097
BseCI ATCGAT 1 cut(s) 125
BseDI CCNNGG 6 cut(s) 244, 1038, 1408, 1764, 1815, 2433
BseGI GGATG 7 cut(s) 519, 670, 1071, 1455, 2050, 2457, 2467
BseLI CCNNNNNNNGG 2 cut(s) 1705, 1929
BseMI GCAATG 3 cut(s) 180, 481, 1207
BseMII CTCAG 5 cut(s) 48, 834, 936, 1308, 1803
BseNI ACTGG 4 cut(s) 1076, 1212, 2344, 2657
BseRI GAGGAG 1 cut(s) 368
BseSI GKGCMC 1 cut(s) 1105
BseXI GCAGC 6 cut(s) 140, 608, 1245, 1798, 2209, 2251
BsgI GTGCAG 5 cut(s) 1034, 1523, 1743, 2431, 2742
BshFI GGCC 3 cut(s) 402, 641, 1176
BshNI GGYRCC 1 cut(s) 314
BshTI ACCGGT 1 cut(s) 2760
BshVI ATCGAT 1 cut(s) 125
BsiHKAI GWGCWC 2 cut(s) 1105, 2508
BsiSI CCGG 3 cut(s) 362, 2540, 2761
BslFI GGGAC 5 cut(s) 304, 2075, 2171, 2449, 2522
BslI CCNNNNNNNGG 2 cut(s) 1705, 1929
BsmAI GTCTC 2 cut(s) 569, 814
BsmFI GGGAC 5 cut(s) 304, 2075, 2171, 2449, 2522
BsmI GAATGC 3 cut(s) 1300, 1455, 1606
BsnI GGCC 3 cut(s) 402, 641, 1176
Bsp1286I GDGCHC 2 cut(s) 1105, 2508
Bsp19I CCATGG 2 cut(s) 244, 1815
BspACI CCGC 8 cut(s) 156, 171, 624, 638, 757, 1836, 2189, 2209
BspANI GGCC 3 cut(s) 402, 641, 1176
BspCNI CTCAG 5 cut(s) 49, 833, 937, 1309, 1802
BspDI ATCGAT 1 cut(s) 125
BspHI TCATGA 3 cut(s) 1359, 1960, 2508
BspLI GGNNCC 3 cut(s) 316, 817, 2600
BspMAI CTGCAG 3 cut(s) 706, 2269, 2562
BspMI ACCTGC 2 cut(s) 229, 2519
BspPI GGATC 3 cut(s) 2282, 2389, 2747
BspT107I GGYRCC 1 cut(s) 314
BsrDI GCAATG 3 cut(s) 180, 481, 1207
BsrFI RCCGGY 1 cut(s) 2760
BsrI ACTGG 4 cut(s) 1076, 1212, 2344, 2657
BssAI RCCGGY 1 cut(s) 2760
BssECI CCNNGG 6 cut(s) 244, 1038, 1408, 1764, 1815, 2433
BssNI GRCGYC 1 cut(s) 2088
BssT1I CCWWGG 5 cut(s) 244, 1038, 1408, 1764, 1815
Bst2UI CCWGG 3 cut(s) 1428, 1730, 2097
Bst4CI ACNGT 4 cut(s) 531, 752, 808, 2606
BstACI GRCGYC 1 cut(s) 2088
BstAPI GCANNNNNTGC 3 cut(s) 1109, 1267, 1601
BstC8I GCNNGC 8 cut(s) 643, 1006, 2023, 2151, 2216, 2220, 2406, 2410
BstDEI CTNAG 9 cut(s) 57, 820, 856, 945, 1317, 1530, 1633, 1684, 1789
BstDSI CCRYGG 2 cut(s) 244, 1815
BstF5I GGATG 7 cut(s) 519, 670, 1071, 1455, 2050, 2457, 2467
BstHHI GCGC 2 cut(s) 1465, 1606
BstMAI GTCTC 2 cut(s) 569, 814
BstMWI GCNNNNNNNGC 8 cut(s) 1109, 1267, 1346, 1601, 1730, 1952, 2215, 2261
BstNI CCWGG 3 cut(s) 1428, 1730, 2097
BstNSI RCATGY 4 cut(s) 1008, 1502, 2229, 2717
BstSCI CCNGG 4 cut(s) 1426, 1728, 2095, 2538
BstSFI CTRYAG 5 cut(s) 492, 588, 702, 2265, 2558
BstSLI GKGCMC 1 cut(s) 1105
BstV1I GCAGC 6 cut(s) 140, 608, 1245, 1798, 2209, 2251
BstV2I GAAGAC 1 cut(s) 324
BstX2I RGATCY 2 cut(s) 2287, 2752
BstYI RGATCY 2 cut(s) 2287, 2752
Bsu15I ATCGAT 1 cut(s) 125
BsuI GTATCC 2 cut(s) 2536, 2557
BsuRI GGCC 3 cut(s) 402, 641, 1176
BsuTUI ATCGAT 1 cut(s) 125
BtgI CCRYGG 2 cut(s) 244, 1815
BtsCI GGATG 7 cut(s) 519, 670, 1071, 1455, 2050, 2457, 2467
BtsI GCAGTG 2 cut(s) 847, 2555
BtsIMutI CAGTG 5 cut(s) 748, 847, 1205, 2555, 2611
BveI ACCTGC 2 cut(s) 229, 2519
Cac8I GCNNGC 8 cut(s) 643, 1006, 2023, 2151, 2216, 2220, 2406, 2410
CaiI CAGNNNCTG 1 cut(s) 812
CciI TCATGA 3 cut(s) 1359, 1960, 2508
CfoI GCGC 2 cut(s) 1465, 1606
Cfr10I RCCGGY 1 cut(s) 2760
Cfr13I GGNCC 2 cut(s) 241, 933
ClaI ATCGAT 1 cut(s) 125
CseI GACGC 2 cut(s) 77, 2077
Csp6I GTAC 6 cut(s) 4, 101, 504, 1027, 1509, 2059
CspAI ACCGGT 1 cut(s) 2760
CspCI CAANNNNNGTGG 2 cut(s) 2065, 2100
CviQI GTAC 6 cut(s) 4, 101, 504, 1027, 1509, 2059
DdeI CTNAG 9 cut(s) 57, 820, 856, 945, 1317, 1530, 1633, 1684, 1789
DraI TTTAAA 1 cut(s) 1545
EaeI YGGCCR 1 cut(s) 400
EciI GGCGGA 1 cut(s) 2224
Ecl136II GAGCTC 1 cut(s) 2506
Eco130I CCWWGG 5 cut(s) 244, 1038, 1408, 1764, 1815
Eco147I AGGCCT 1 cut(s) 1176
Eco24I GRGCYC 1 cut(s) 2508
Eco32I GATATC 2 cut(s) 90, 1911
Eco47I GGWCC 2 cut(s) 241, 933
Eco53kI GAGCTC 1 cut(s) 2506
Eco57I CTGAAG 2 cut(s) 851, 2175
EcoICRI GAGCTC 1 cut(s) 2506
EcoRI GAATTC 3 cut(s) 688, 778, 846
EcoRII CCWGG 3 cut(s) 1426, 1728, 2095
EcoRV GATATC 2 cut(s) 90, 1911
EcoT14I CCWWGG 5 cut(s) 244, 1038, 1408, 1764, 1815
EcoT38I GRGCYC 1 cut(s) 2508
ErhI CCWWGG 5 cut(s) 244, 1038, 1408, 1764, 1815
FaqI GGGAC 5 cut(s) 304, 2075, 2171, 2449, 2522
FauI CCCGC 2 cut(s) 164, 2196
FbaI TGATCA 2 cut(s) 655, 2634
FblI GTMKAC 1 cut(s) 2706
Fnu4HI GCNGC 7 cut(s) 154, 622, 639, 1259, 1812, 2223, 2265
FokI GGATG 7 cut(s) 526, 677, 1078, 1442, 2057, 2454, 2464
FriOI GRGCYC 1 cut(s) 2508
Fsp4HI GCNGC 7 cut(s) 154, 622, 639, 1259, 1812, 2223, 2265
FspAI RTGCGCAY 1 cut(s) 1464
FspBI CTAG 8 cut(s) 186, 518, 572, 579, 869, 1947, 2279, 2285
FspI TGCGCA 1 cut(s) 1464
GlaI GCGC 2 cut(s) 1464, 1605
GluI GCNGC 7 cut(s) 154, 622, 639, 1259, 1812, 2223, 2265
GsuI CTGGAG 3 cut(s) 1362, 1695, 2628
HaeIII GGCC 3 cut(s) 402, 641, 1176
HapII CCGG 3 cut(s) 362, 2540, 2761
HgaI GACGC 2 cut(s) 77, 2077
HhaI GCGC 2 cut(s) 1465, 1606
Hin1I GRCGYC 1 cut(s) 2088
Hin6I GCGC 2 cut(s) 1463, 1604
HinP1I GCGC 2 cut(s) 1463, 1604
HincII GTYRAC 1 cut(s) 804
HindII GTYRAC 1 cut(s) 804
HindIII AAGCTT 4 cut(s) 1347, 1641, 1775, 1953
HpaII CCGG 3 cut(s) 362, 2540, 2761
HphI GGTGA 4 cut(s) 787, 1550, 2646, 2759
Hpy166II GTNNAC 5 cut(s) 804, 1103, 1681, 2654, 2707
Hpy8I GTNNAC 5 cut(s) 804, 1103, 1681, 2654, 2707
Hpy99I CGWCG 1 cut(s) 2783
HpyCH4III ACNGT 4 cut(s) 531, 752, 808, 2606
HpyCH4IV ACGT 3 cut(s) 648, 1800, 2364
HpyF10VI GCNNNNNNNGC 8 cut(s) 1109, 1267, 1346, 1601, 1730, 1952, 2215, 2261
HpyF3I CTNAG 9 cut(s) 57, 820, 856, 945, 1317, 1530, 1633, 1684, 1789
HpySE526I ACGT 3 cut(s) 648, 1800, 2364
Hsp92I GRCGYC 1 cut(s) 2088
HspAI GCGC 2 cut(s) 1463, 1604
Ksp22I TGATCA 2 cut(s) 655, 2634
LmnI GCTCC 1 cut(s) 2211
Lsp1109I GCAGC 6 cut(s) 140, 608, 1245, 1798, 2209, 2251
LweI GCATC 4 cut(s) 348, 504, 697, 931
MaeI CTAG 8 cut(s) 186, 518, 572, 579, 869, 1947, 2279, 2285
MaeII ACGT 3 cut(s) 648, 1800, 2364
MaeIII GTNAC 7 cut(s) 376, 1087, 1210, 1285, 1310, 1801, 1996
MflI RGATCY 2 cut(s) 2287, 2752
MhlI GDGCHC 2 cut(s) 1105, 2508
MlyI GAGTC 4 cut(s) 887, 1084, 1417, 1781
MmeI TCCRAC 2 cut(s) 855, 1719
MroXI GAANNNNTTC 3 cut(s) 1059, 1755, 1956
MseI TTAA 9 cut(s) 162, 258, 737, 765, 908, 1544, 1773, 2172, 2661
MslI CAYNNNNRTG 7 cut(s) 309, 608, 1520, 1820, 2241, 2513, 2718
MspI CCGG 3 cut(s) 362, 2540, 2761
MspR9I CCNGG 4 cut(s) 1428, 1730, 2097, 2540
Mva1269I GAATGC 3 cut(s) 1300, 1455, 1606
MvaI CCWGG 3 cut(s) 1428, 1730, 2097
MwoI GCNNNNNNNGC 8 cut(s) 1109, 1267, 1346, 1601, 1730, 1952, 2215, 2261
NciI CCSGG 1 cut(s) 2540
NcoI CCATGG 2 cut(s) 244, 1815
NlaIV GGNNCC 3 cut(s) 316, 817, 2600
NmuCI GTSAC 1 cut(s) 1087
NsbI TGCGCA 1 cut(s) 1464
NspI RCATGY 4 cut(s) 1008, 1502, 2229, 2717
PaeI GCATGC 1 cut(s) 1008
PagI TCATGA 3 cut(s) 1359, 1960, 2508
PceI AGGCCT 1 cut(s) 1176
PcsI WCGNNNNNNNCGW 1 cut(s) 89
PctI GAATGC 3 cut(s) 1300, 1455, 1606
PdmI GAANNNNTTC 3 cut(s) 1059, 1755, 1956
PfeI GAWTC 8 cut(s) 122, 132, 419, 731, 1147, 1487, 2300, 2613
PfoI TCCNGGA 1 cut(s) 2538
PinAI ACCGGT 1 cut(s) 2760
PkrI GCNGC 7 cut(s) 155, 623, 640, 1260, 1813, 2224, 2266
PleI GAGTC 4 cut(s) 886, 1084, 1417, 1781
PpsI GAGTC 4 cut(s) 886, 1084, 1417, 1781
PsiI TTATAA 1 cut(s) 434
Psp124BI GAGCTC 1 cut(s) 2508
Psp6I CCWGG 3 cut(s) 1426, 1728, 2095
PspGI CCWGG 3 cut(s) 1426, 1728, 2095
PspN4I GGNNCC 3 cut(s) 316, 817, 2600
PspPI GGNCC 2 cut(s) 241, 933
PstI CTGCAG 3 cut(s) 706, 2269, 2562
PstNI CAGNNNCTG 1 cut(s) 812
PsuI RGATCY 2 cut(s) 2287, 2752
RsaI GTAC 6 cut(s) 5, 102, 505, 1028, 1510, 2060
RsaNI GTAC 6 cut(s) 4, 101, 504, 1027, 1509, 2059
RseI CAYNNNNRTG 7 cut(s) 309, 608, 1520, 1820, 2241, 2513, 2718
SacI GAGCTC 1 cut(s) 2508
SaqAI TTAA 9 cut(s) 162, 258, 737, 765, 908, 1544, 1773, 2172, 2661
SatI GCNGC 7 cut(s) 154, 622, 639, 1259, 1812, 2223, 2265
Sau96I GGNCC 2 cut(s) 241, 933
ScaI AGTACT 1 cut(s) 505
SchI GAGTC 4 cut(s) 887, 1084, 1417, 1781
ScrFI CCNGG 4 cut(s) 1428, 1730, 2097, 2540
SduI GDGCHC 2 cut(s) 1105, 2508
SfaNI GCATC 4 cut(s) 348, 504, 697, 931
SfcI CTRYAG 5 cut(s) 492, 588, 702, 2265, 2558
SinI GGWCC 2 cut(s) 241, 933
SmiI ATTTAAAT 1 cut(s) 1545
SmiMI CAYNNNNRTG 7 cut(s) 309, 608, 1520, 1820, 2241, 2513, 2718
SpeI ACTAGT 1 cut(s) 578
SphI GCATGC 1 cut(s) 1008
SseBI AGGCCT 1 cut(s) 1176
SsiI CCGC 8 cut(s) 156, 171, 624, 638, 757, 1836, 2189, 2209
SspI AATATT 1 cut(s) 52
SspMI CTAG 8 cut(s) 186, 518, 572, 579, 869, 1947, 2279, 2285
SstI GAGCTC 1 cut(s) 2508
StuI AGGCCT 1 cut(s) 1176
StyD4I CCNGG 4 cut(s) 1426, 1728, 2095, 2538
StyI CCWWGG 5 cut(s) 244, 1038, 1408, 1764, 1815
SwaI ATTTAAAT 1 cut(s) 1545
TaaI ACNGT 4 cut(s) 531, 752, 808, 2606
TaiI ACGT 3 cut(s) 651, 1803, 2367
TaqI TCGA 7 cut(s) 8, 92, 125, 692, 794, 995, 2384
TatI WGTACW 2 cut(s) 3, 503
TauI GCSGC 1 cut(s) 641
TfiI GAWTC 8 cut(s) 122, 132, 419, 731, 1147, 1487, 2300, 2613
Tru1I TTAA 9 cut(s) 162, 258, 737, 765, 908, 1544, 1773, 2172, 2661
Tru9I TTAA 9 cut(s) 162, 258, 737, 765, 908, 1544, 1773, 2172, 2661
TscAI CASTG 5 cut(s) 755, 847, 1212, 2562, 2611
TseFI GTSAC 1 cut(s) 1087
TseI GCWGC 6 cut(s) 153, 621, 1258, 1811, 2222, 2264
Tsp45I GTSAC 1 cut(s) 1087
TspRI CASTG 5 cut(s) 755, 847, 1212, 2562, 2611
VneI GTGCAC 1 cut(s) 1101
VpaK11BI GGWCC 2 cut(s) 241, 933
XapI RAATTY 8 cut(s) 688, 778, 846, 1127, 1546, 2164, 2444, 2484
XceI RCATGY 4 cut(s) 1008, 1502, 2229, 2717
XmiI GTMKAC 1 cut(s) 2706
XmnI GAANNNNTTC 3 cut(s) 1059, 1755, 1956
XspI CTAG 8 cut(s) 186, 518, 572, 579, 869, 1947, 2279, 2285
ZrmI AGTACT 1 cut(s) 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.