Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008206

Physical Location & Seq

Genomic Coordinates Forward (+)

21069329 .. 21070717

Gene Structure 1389 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGACATTGTTTCAAATGCAAGCTGTACCACCAACTGCCTTGCTCCTCTTGCCAAGGTGATTCATGAGGAATTTGGTATTCTTGAAGGTTTGATGACCACTGTGCATGCAACTACAGCAACACAGAAGACAGTCGATGGCCCTTCAATGAAGGATTGGAGAGGAGGCCGAGGAGCTGGACAGAACATCATCCCTAGTTCTACCGGTGCTGCAAAGGCAGTTGGAAAAGTTCTACCAGAACTCAATGGAAAGCTCACTGGTATGGCCTTCCGTGTCCCAACTCCTAATGTATCTGTTGTGGACTTAACTTGTCGACTTGAGAAGAGTTCTTCATATGAGGATGTCAAAGCCGCGATCAGGTATGCTGCTGACGGGCCACTTAGAGGCATCCTTGGATACACAGAAGAAGATGTTGTCTCCAATGACTTTGTCGGTGACTCAAGGTCTAGTATATTCGATGCCAAGGCTGGATTGGCACTCAGTTCCTCCTTTGTCAAGCTTGTTTCGTGGTACGACAACGAGTGGGGATACAGCAACCGAGTTTTGGACCTCATAGAGCACATGGCGTTAGTGGCAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004365 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0009536 GO:0009555 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0009908 GO:0010033 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043891 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0055081 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0080022 GO:0080144 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010

Pfam Domains

Protein Families

Gp_dh_C Gp_dh_N

Protein Analysis

194

Amino Acids

20.56

Weight (kDa)

5.37

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gp_dh_C	PF02800	14 - 171	1.5e-69	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16300 AT1G79530
fragaria_vesca	FvH4_3g14640
malus_domestica	MD05G1234400.v1.1 MD10G1210900.v1.1
prunus_persica	Prupe.4G131700_v2.0.a1 Prupe.4G131700_v2.0.a1
pyrus_communis	pycom05g21170 pycom10g17920 pycom10g17930
rosa_chinensis	RchiOBHm_Chr5g0024101
rosa_laevigata	RLG00000032770
rosa_multiflora	Rmu_sc0020340.1_g000003 Rmu_sc0026565.1_g000003
rosa_roxburghii	Rroxscaffold_1G00055140 Rroxscaffold_1G00055670
rosa_rugosa	Rorug05G0081300
rosa_samantha	Rh5AG172200 Rh5BG168700 Rh5CG184500 Rh5DG171000
rosa_wichuraiana	Rw0G003230 Rw5G015540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	313
AccII	CGCG	1 cut(s)	353
AciI	CCGC	1 cut(s)	351
AcsI	RAATTY	1 cut(s)	71
AfaI	GTAC	2 cut(s)	28, 512
AfiI	CCNNNNNNNGG	3 cut(s)	357, 383, 544
AgeI	ACCGGT	1 cut(s)	203
AgsI	TTSAA	3 cut(s)	15, 86, 147
AhdI	GACNNNNNGTC	1 cut(s)	442
AluBI	AGCT	4 cut(s)	24, 176, 253, 499
AluI	AGCT	4 cut(s)	24, 176, 253, 499
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	1 cut(s)	421
AoxI	GGCC	4 cut(s)	139, 166, 264, 374
ApeKI	GCWGC	3 cut(s)	209, 365, 575
ApoI	RAATTY	1 cut(s)	71
AsiGI	ACCGGT	1 cut(s)	203
AspS9I	GGNCC	3 cut(s)	140, 374, 547
AsuHPI	GGTGA	2 cut(s)	70, 446
AvaII	GGWCC	1 cut(s)	547
BbsI	GAAGAC	1 cut(s)	134
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	2 cut(s)	196, 352
BccI	CCATC	1 cut(s)	131
BciVI	GTATCC	2 cut(s)	389, 521
BcoDI	GTCTC	1 cut(s)	421
BfaI	CTAG	2 cut(s)	195, 447
BfmI	CTRYAG	1 cut(s)	114
BfuI	GTATCC	2 cut(s)	389, 521
BisI	GCNGC	4 cut(s)	210, 351, 366, 576
BlsI	GCNGC	4 cut(s)	211, 352, 367, 577
Bme18I	GGWCC	1 cut(s)	547
BmeRI	GACNNNNNGTC	1 cut(s)	442
BmgT120I	GGNCC	3 cut(s)	140, 374, 547
BmsI	GCATC	2 cut(s)	396, 448
BpiI	GAAGAC	1 cut(s)	134
BpuEI	CTTGAG	2 cut(s)	338, 424
BsaJI	CCNNGG	4 cut(s)	54, 169, 391, 462
BsaWI	WCCGGW	1 cut(s)	203
Bsc4I	CCNNNNNNNGG	3 cut(s)	357, 383, 544
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	262
BseDI	CCNNGG	4 cut(s)	54, 169, 391, 462
BseGI	GGATG	3 cut(s)	189, 346, 387
BseLI	CCNNNNNNNGG	3 cut(s)	357, 383, 544
BseMII	CTCAG	1 cut(s)	493
BseNI	ACTGG	1 cut(s)	262
BseRI	GAGGAG	3 cut(s)	36, 177, 186
BseXI	GCAGC	2 cut(s)	196, 352
Bsh1236I	CGCG	1 cut(s)	353
BshFI	GGCC	4 cut(s)	141, 168, 266, 376
BshTI	ACCGGT	1 cut(s)	203
BsiHKAI	GWGCWC	1 cut(s)	561
BsiSI	CCGG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	3 cut(s)	357, 383, 544
BsmAI	GTCTC	1 cut(s)	421
BsmFI	GGGAC	1 cut(s)	260
BsnI	GGCC	4 cut(s)	141, 168, 266, 376
Bsp1286I	GDGCHC	1 cut(s)	561
Bsp143I	GATC	1 cut(s)	354
BspACI	CCGC	1 cut(s)	351
BspANI	GGCC	4 cut(s)	141, 168, 266, 376
BspCNI	CTCAG	1 cut(s)	492
BspFNI	CGCG	1 cut(s)	353
BspHI	TCATGA	1 cut(s)	64
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	262
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	4 cut(s)	54, 169, 391, 462
BssMI	GATC	1 cut(s)	354
BssT1I	CCWWGG	3 cut(s)	54, 391, 462
Bst4CI	ACNGT	2 cut(s)	103, 133
Bst6I	CTCTTC	1 cut(s)	317
BstC8I	GCNNGC	2 cut(s)	22, 108
BstDEI	CTNAG	2 cut(s)	380, 479
BstF5I	GGATG	3 cut(s)	189, 346, 387
BstFNI	CGCG	1 cut(s)	353
BstKTI	GATC	1 cut(s)	357
BstMAI	GTCTC	1 cut(s)	421
BstMBI	GATC	1 cut(s)	354
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 116, 215, 473, 572
BstNSI	RCATGY	1 cut(s)	110
BstSFI	CTRYAG	1 cut(s)	114
BstUI	CGCG	1 cut(s)	353
BstV1I	GCAGC	2 cut(s)	196, 352
BstV2I	GAAGAC	1 cut(s)	134
BsuI	GTATCC	2 cut(s)	389, 521
BsuRI	GGCC	4 cut(s)	141, 168, 266, 376
BtsCI	GGATG	3 cut(s)	189, 346, 387
BtsIMutI	CAGTG	2 cut(s)	99, 255
Cac8I	GCNNGC	2 cut(s)	22, 108
CciI	TCATGA	1 cut(s)	64
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	3 cut(s)	140, 374, 547
Csp6I	GTAC	2 cut(s)	27, 511
CspAI	ACCGGT	1 cut(s)	203
CviAII	CATG	3 cut(s)	65, 107, 562
CviQI	GTAC	2 cut(s)	27, 511
DdeI	CTNAG	2 cut(s)	380, 479
DpnI	GATC	1 cut(s)	356
DpnII	GATC	1 cut(s)	354
DriI	GACNNNNNGTC	1 cut(s)	442
Eam1104I	CTCTTC	1 cut(s)	317
Eam1105I	GACNNNNNGTC	1 cut(s)	442
EarI	CTCTTC	1 cut(s)	317
Eco130I	CCWWGG	3 cut(s)	54, 391, 462
Eco47I	GGWCC	1 cut(s)	547
EcoT14I	CCWWGG	3 cut(s)	54, 391, 462
ErhI	CCWWGG	3 cut(s)	54, 391, 462
FaeI	CATG	3 cut(s)	68, 110, 565
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	3 cut(s)	64, 106, 561
FauNDI	CATATG	1 cut(s)	334
FblI	GTMKAC	1 cut(s)	313
Fnu4HI	GCNGC	4 cut(s)	210, 351, 366, 576
FokI	GGATG	3 cut(s)	176, 353, 374
Fsp4HI	GCNGC	4 cut(s)	210, 351, 366, 576
FspBI	CTAG	2 cut(s)	195, 447
GluI	GCNGC	4 cut(s)	210, 351, 366, 576
HaeIII	GGCC	4 cut(s)	141, 168, 266, 376
HapII	CCGG	1 cut(s)	204
Hin1II	CATG	3 cut(s)	68, 110, 565
HincII	GTYRAC	1 cut(s)	314
HindII	GTYRAC	1 cut(s)	314
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	2 cut(s)	61, 437
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	2 cut(s)	70, 446
Hpy166II	GTNNAC	2 cut(s)	301, 314
Hpy188III	TCNNGA	2 cut(s)	65, 83
Hpy8I	GTNNAC	2 cut(s)	301, 314
HpyAV	CCTTC	4 cut(s)	80, 145, 153, 277
HpyCH4III	ACNGT	2 cut(s)	103, 133
HpyCH4V	TGCA	4 cut(s)	20, 106, 110, 212
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 116, 215, 473, 572
HpyF3I	CTNAG	2 cut(s)	380, 479
Hsp92II	CATG	3 cut(s)	68, 110, 565
Kzo9I	GATC	1 cut(s)	354
LmnI	GCTCC	2 cut(s)	49, 173
LpnPI	CCDG	6 cut(s)	162, 217, 243, 249, 343, 453
Lsp1109I	GCAGC	2 cut(s)	196, 352
LweI	GCATC	2 cut(s)	396, 448
MaeI	CTAG	2 cut(s)	195, 447
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	1 cut(s)	356
MboI	GATC	1 cut(s)	354
MboII	GAAGA	5 cut(s)	139, 321, 334, 416, 419
MhlI	GDGCHC	1 cut(s)	561
MluCI	AATT	1 cut(s)	71
MlyI	GAGTC	1 cut(s)	431
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	9 cut(s)	57, 61, 155, 158, 164, 331, 377, 496, 560
MseI	TTAA	1 cut(s)	305
MslI	CAYNNNNRTG	1 cut(s)	260
MspI	CCGG	1 cut(s)	204
MvnI	CGCG	1 cut(s)	353
MwoI	GCNNNNNNNGC	5 cut(s)	50, 116, 215, 473, 572
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	1 cut(s)	354
NlaIII	CATG	3 cut(s)	68, 110, 565
NmeAIII	GCCGAG	1 cut(s)	194
NmuCI	GTSAC	1 cut(s)	434
NspI	RCATGY	1 cut(s)	110
PaeI	GCATGC	1 cut(s)	110
PagI	TCATGA	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	61
PflFI	GACNNNGTC	1 cut(s)	428
PinAI	ACCGGT	1 cut(s)	203
PkrI	GCNGC	4 cut(s)	211, 352, 367, 577
PleI	GAGTC	1 cut(s)	431
PpsI	GAGTC	1 cut(s)	431
PspPI	GGNCC	3 cut(s)	140, 374, 547
PsyI	GACNNNGTC	1 cut(s)	428
RsaI	GTAC	2 cut(s)	28, 512
RsaNI	GTAC	2 cut(s)	27, 511
RseI	CAYNNNNRTG	1 cut(s)	260
SalI	GTCGAC	1 cut(s)	312
SaqAI	TTAA	1 cut(s)	305
SatI	GCNGC	4 cut(s)	210, 351, 366, 576
Sau3AI	GATC	1 cut(s)	354
Sau96I	GGNCC	3 cut(s)	140, 374, 547
SchI	GAGTC	1 cut(s)	431
SduI	GDGCHC	1 cut(s)	561
SetI	ASST	9 cut(s)	26, 60, 91, 178, 255, 362, 446, 501, 552
SfaNI	GCATC	2 cut(s)	396, 448
SfcI	CTRYAG	1 cut(s)	114
SinI	GGWCC	1 cut(s)	547
SmiMI	CAYNNNNRTG	1 cut(s)	260
SmlI	CTYRAG	2 cut(s)	317, 439
SmoI	CTYRAG	2 cut(s)	317, 439
SphI	GCATGC	1 cut(s)	110
Sse9I	AATT	1 cut(s)	71
SsiI	CCGC	1 cut(s)	351
SspMI	CTAG	2 cut(s)	195, 447
StyI	CCWWGG	3 cut(s)	54, 391, 462
TaaI	ACNGT	2 cut(s)	103, 133
TaqI	TCGA	3 cut(s)	135, 313, 456
TasI	AATT	1 cut(s)	71
TauI	GCSGC	1 cut(s)	353
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	1 cut(s)	305
Tru9I	TTAA	1 cut(s)	305
TscAI	CASTG	2 cut(s)	106, 262
TseFI	GTSAC	1 cut(s)	434
TseI	GCWGC	3 cut(s)	209, 365, 575
Tsp45I	GTSAC	1 cut(s)	434
TspDTI	ATGAA	3 cut(s)	53, 164, 321
TspGWI	ACGGA	1 cut(s)	260
TspRI	CASTG	2 cut(s)	106, 262
Tth111I	GACNNNGTC	1 cut(s)	428
VpaK11BI	GGWCC	1 cut(s)	547
XapI	RAATTY	1 cut(s)	71
XceI	RCATGY	1 cut(s)	110
XcmI	CCANNNNNNNNNTGG	1 cut(s)	469
XmiI	GTMKAC	1 cut(s)	313
XspI	CTAG	2 cut(s)	195, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.