Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001578

Physical Location & Seq

Genomic Coordinates Forward (+)

23281510 .. 23289764

Gene Structure 8255 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2097 bp

ATGCGTCTTCTTCTCCATCGGCCTTTCCGCAAGCTCTCCTTCTTATCCTCCTCAACCTCCGGCCTCCTAATGGCCTCCAAGCACCTGCTCAAGTCCGCTCCTTTTCCGAACCCACTGACCCCTTCTGCACACAGACACCCCTTCCACTCTCGCAGCCTCGTCTTCTCTCCGATTTCCTCGAAACCCGTGTTGAAAATTCGGCCGCTTTGCCTCCGGACTAACGGATATTCTTCTCTCTCCCCTGCCCATGTCGCAGAACCAGTTGAAGTGGAAACCCCAAAAGAAAATGGAATGTCCTCTATGCAAATGAGGATCTTGAAGGAGAAATTGGAGAATCTTGGCATAGACGGTGAAACAATATCTGTACCAGGGCAGTACAACCACTTGATTTGCCCAATGTGCAAAGGTGGCGATTCAGAGGAAAAGAGCTTATCCATGGATATTTCGGAAAATTGGGATCGTGCTATTTGGTGTTGCTTTCGTGGAAAATGTGGGTGGACAGGTAGCACGAGGGCGTTTGTAGGAAACAGGTTGCCACCTGAAACTTCAAAACTTAAGAAAAAAAGGGAAATCACAGAGCAAAGTCTAGGACTGGAACCACTTTGTGAGGAGATTGTAGATTATTTTTCAGAACGAATGATATCAAGGGGAACATTGATGAGAAATGCTGTCATGCAAAAAAGTACAGGTGATCAGATTGCTATTGCTTTTCCTTATCGGAGAGACGGAAAGCTTGTTAGTTGCAAGTATCGGGACATCGACAAGAAGTTCTGGCAGGAAAAGGATACTGAAAAGATTTTCTATGGACTGGACGATATAAAGGGAACTAATGATATCATCATTGTTGAAGGCGAAATTGATAAACTTTCAATGGAAGAAGCTGGCTTTTGTAATTGTGTGAGTGTACCTGATGGTGCTCCTCCAAAGGTTTCCTCAAAGGAGTTGCCACCTGAAGAGAAGGATACAAAGTATCAATATCTGTGGAACTGCAAAGAGTACTTAAAGAAGGCATCACGCATTGTACTTGCCACTGATGGAGATGGTCCTGGTCAAGCCCTAGCTGAAGAGCTTGCACGCCGCCTTGGAAGAGAAAGATGTTGGCGAGTCAAATGGCCAAAGAAAAATGATACGGAGAACTTCAAAGATGCAAATGAGGTTCTCATGTACTTGGGTTCGGATGTATTGAAGGGAGTAATTGAGGATGCTGAATTATTTCCTATACGTGGATTGTTCAATTTTGCGAATTACTTCGATGAACTCGATGCATATTATCACCGGACTCTTGGATATGAGTATGGTGTCTCAACTGGGTGGAAAAATCTGAATGATTTGTACAATGTTGTTCCTGGTGAGTTGACTATAGTAACAGGGGTCCCTAATTCAGGTAAGAGTGAGTGGATTGATGCTCTCTTGTGCAATCTATCTGCAAGTGTTGGATGGAAATTTGTACTTTGCTCTATGGAGAACAAGGTTAGGGAGCATGCACGAAAATTGCTGGAGAAGCACATAAAGAAGCCTTTCTTTGATAAACGTTATGGTGGTTCTGCTGAACGGATGAGTGTTGAAGAATTTGAGCAAGGAAAAAAATGGTTAAATGACACCTTTTACCTCATAAGGTGTGAGGATGATTCTCTTCCAAATATCAGTTGGGTTCTTGATCTTGCACAAGCAGCAGTACTTAGGCATGGGGTGCGTGGACTTGTAATTGATCCTTACAATGAGCTTGATCATCAACGTCCCCCGAACCAGACCGAAACCGAGTATGTGAGTCAGATGCTTACTAAGATCAAACGGTTTGCTCAACATCATTGTTGCCATGTTTGGTTTGTGGCGCATCCTAGACAGTTGCACCAGTGGACCGGGGGTCCTCCTAATCTCTATGATATAAGTGGAAGTGCACACTTCATAAATAAATGCGACAATGGAATTGTAATTCATCGTAATCGGGATCCAGAGGCTGGGGAGATGGATCAAGTACAAGTTTGTGTACGGAAGGTACGAAATAAGGTAGCGGGAACCATAGGCGACGCCTTTTTGTCGTACGATAGGGCAACTGGTCAGTTCATGGATGTTGAAAATACTCAAAAGAGCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003697 GO:0003824 GO:0003896 GO:0003899 GO:0004003 GO:0004386 GO:0005488 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0016043 GO:0016070 GO:0016462 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032392 GO:0032508 GO:0032774 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0042623 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046390 GO:0046483 GO:0051276 GO:0055086 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0090407 GO:0097159 GO:0097747 GO:0140097 GO:0140098 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaB_C Toprim_4

Protein Analysis

699

Amino Acids

79.43

Weight (kDa)

7.97

Isoelectric Point (pI)

32.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Toprim_4	PF13662	278 - 362	5.9e-11	Toprim domain
Toprim	PF01751	279 - 359	3.5e-08	Toprim domain
Toprim_2	PF13155	280 - 385	5.4e-06	Toprim-like
DnaB_C	PF03796	433 - 688	4.9e-10	DnaB-like helicase C terminal domain
AAA_25	PF13481	447 - 615	1.3e-07	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30660 AT1G30660 AT1G30660 AT1G30680
fragaria_vesca	FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11220 FvH4_3g11220
malus_domestica	MD05G1265600.v1.1 MD10G1243800.v1.1
prunus_persica	Prupe.4G099700_v2.0.a1 Prupe.4G099700_v2.0.a1 Prupe.4G099700_v2.0.a1 Prupe.4G099700_v2.0.a1 Prupe.4G099900_v2.0.a1 Prupe.4G099900_v2.0.a1
pyrus_communis	pycom05g24970 pycom10g20390
rosa_chinensis	RchiOBHm_Chr5g0018141 RchiOBHm_Chr5g0018171
rosa_laevigata	RLG00000032341 RLG00000032343
rosa_multiflora	Rmu_sc0006594.1_g000001 Rmu_sc0013020.1_g000001 Rmu_sc0013020.1_g000004
rosa_roxburghii	Rroxscaffold_1G00059480 Rroxscaffold_1G00059500
rosa_rugosa	Rorug05G0040700 Rorug05G0040900
rosa_samantha	Rh5AG133500 Rh5AG133800 Rh5BG131900 Rh5BG132300 Rh5CG144200 Rh5CG144500 Rh5DG133900 Rh5DG134200
rosa_wichuraiana	Rw5G011640 Rw5G011690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	93
Acc36I	ACCTGC	1 cut(s)	93
AccB7I	CCANNNNNTGG	1 cut(s)	1958
AccBSI	CCGCTC	1 cut(s)	98
AccIII	TCCGGA	1 cut(s)	213
AciI	CCGC	5 cut(s)	28, 96, 203, 1078, 2012
AclI	AACGTT	1 cut(s)	1531
AclWI	GGATC	6 cut(s)	320, 465, 1703, 1943, 1956, 1977
AcoI	YGGCCR	2 cut(s)	200, 1112
AcsI	RAATTY	3 cut(s)	195, 1442, 1568
AcuI	CTGAAG	2 cut(s)	972, 1083
AcyI	GRCGYC	1 cut(s)	2028
AdeI	CACNNNGTG	1 cut(s)	605
AfiI	CCNNNNNNNGG	4 cut(s)	70, 1223, 1382, 1958
AflII	CTTAAG	1 cut(s)	554
AhdI	GACNNNNNGTC	1 cut(s)	1863
AjnI	CCWGG	3 cut(s)	367, 1045, 1345
AjuI	GAANNNNNNNTTGG	2 cut(s)	311, 343
AluBI	AGCT	7 cut(s)	34, 429, 733, 881, 1061, 1069, 1723
AluI	AGCT	7 cut(s)	34, 429, 733, 881, 1061, 1069, 1723
Alw21I	GWGCWC	3 cut(s)	919, 1900, 2093
Alw26I	GTCTC	2 cut(s)	717, 1306
Alw44I	GTGCAC	1 cut(s)	1896
AlwI	GGATC	6 cut(s)	320, 465, 1703, 1943, 1956, 1977
AlwNI	CAGNNNCTG	1 cut(s)	1958
Aor13HI	TCCGGA	1 cut(s)	213
AoxI	GGCC	5 cut(s)	20, 61, 72, 200, 1112
ApaLI	GTGCAC	1 cut(s)	1896
ApeKI	GCWGC	2 cut(s)	153, 1670
ApoI	RAATTY	3 cut(s)	195, 1442, 1568
Asp700I	GAANNNNTTC	3 cut(s)	1212, 1247, 1517
AspLEI	GCGC	1 cut(s)	1834
AspS9I	GGNCC	4 cut(s)	1043, 1372, 1857, 1865
AsuC2I	CCSGG	1 cut(s)	1861
AsuHPI	GGTGA	4 cut(s)	362, 701, 1265, 1361
AvaII	GGWCC	4 cut(s)	1043, 1372, 1857, 1865
BaeGI	GKGCMC	1 cut(s)	1900
BalI	TGGCCA	1 cut(s)	1114
BamHI	GGATCC	1 cut(s)	1948
BauI	CACGAG	1 cut(s)	508
BbsI	GAAGAC	1 cut(s)	154
Bbv12I	GWGCWC	3 cut(s)	919, 1900, 2093
BbvI	GCAGC	2 cut(s)	165, 1682
BccI	CCATC	6 cut(s)	24, 905, 1028, 1034, 1431, 1960
BciT130I	CCWGG	3 cut(s)	369, 1047, 1347
BciVI	GTATCC	2 cut(s)	778, 955
BclI	TGATCA	2 cut(s)	691, 1726
BcnI	CCSGG	1 cut(s)	1861
BcoDI	GTCTC	2 cut(s)	717, 1306
BfaI	CTAG	3 cut(s)	587, 1058, 1839
BfmI	CTRYAG	1 cut(s)	1359
BfrI	CTTAAG	1 cut(s)	554
BfuAI	ACCTGC	1 cut(s)	93
BfuI	GTATCC	2 cut(s)	778, 955
BisI	GCNGC	4 cut(s)	154, 203, 1078, 1671
BlsI	GCNGC	4 cut(s)	155, 204, 1079, 1672
BmcAI	AGTACT	2 cut(s)	998, 1677
Bme1390I	CCNGG	4 cut(s)	369, 1047, 1347, 1861
Bme18I	GGWCC	4 cut(s)	1043, 1372, 1857, 1865
BmeRI	GACNNNNNGTC	1 cut(s)	1863
BmgT120I	GGNCC	4 cut(s)	1043, 1372, 1857, 1865
BmiI	GGNNCC	6 cut(s)	597, 1373, 1374, 1866, 1950, 2017
BmrFI	CCNGG	4 cut(s)	369, 1047, 1347, 1861
BmrI	ACTGGG	1 cut(s)	1317
BmsI	GCATC	7 cut(s)	1019, 1135, 1192, 1252, 1393, 1764, 1843
BmuI	ACTGGG	1 cut(s)	1317
BpiI	GAAGAC	1 cut(s)	154
BpmI	CTGGAG	1 cut(s)	1517
BpuEI	CTTGAG	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	1861
BsaAI	YACGTR	1 cut(s)	1223
BsaHI	GRCGYC	1 cut(s)	2028
BsaJI	CCNNGG	4 cut(s)	368, 435, 1081, 1860
BsaWI	WCCGGW	2 cut(s)	213, 1275
Bsc4I	CCNNNNNNNGG	4 cut(s)	70, 1223, 1382, 1958
Bse1I	ACTGG	6 cut(s)	260, 597, 813, 1312, 1852, 2059
BseAI	TCCGGA	1 cut(s)	213
BseBI	CCWGG	3 cut(s)	369, 1047, 1347
BseDI	CCNNGG	4 cut(s)	368, 435, 1081, 1860
BseGI	GGATG	7 cut(s)	1183, 1207, 1442, 1560, 1630, 1834, 2074
BseLI	CCNNNNNNNGG	4 cut(s)	70, 1223, 1382, 1958
BseNI	ACTGG	6 cut(s)	260, 597, 813, 1312, 1852, 2059
BseRI	GAGGAG	3 cut(s)	40, 623, 909
BseSI	GKGCMC	1 cut(s)	1900
BseX3I	CGGCCG	1 cut(s)	200
BseXI	GCAGC	2 cut(s)	165, 1682
BseYI	CCCAGC	1 cut(s)	1958
BsgI	GTGCAG	1 cut(s)	111
Bsh1285I	CGRYCG	1 cut(s)	203
BshFI	GGCC	5 cut(s)	22, 63, 74, 202, 1114
BsiEI	CGRYCG	1 cut(s)	203
BsiHKAI	GWGCWC	3 cut(s)	919, 1900, 2093
BsiSI	CCGG	4 cut(s)	60, 214, 1276, 1860
BsiWI	CGTACG	1 cut(s)	2040
BslFI	GGGAC	3 cut(s)	767, 1358, 1722
BslI	CCNNNNNNNGG	4 cut(s)	70, 1223, 1382, 1958
BsmAI	GTCTC	2 cut(s)	717, 1306
BsmBI	CGTCTC	1 cut(s)	717
BsmFI	GGGAC	3 cut(s)	767, 1358, 1722
BsnI	GGCC	5 cut(s)	22, 63, 74, 202, 1114
Bsp1286I	GDGCHC	3 cut(s)	919, 1900, 2093
Bsp13I	TCCGGA	1 cut(s)	213
Bsp1407I	TGTACA	1 cut(s)	1332
Bsp143I	GATC	9 cut(s)	312, 457, 691, 1657, 1708, 1726, 1785, 1948, 1969
Bsp19I	CCATGG	1 cut(s)	435
BspACI	CCGC	5 cut(s)	28, 96, 203, 1078, 2012
BspANI	GGCC	5 cut(s)	22, 63, 74, 202, 1114
BspEI	TCCGGA	1 cut(s)	213
BspLI	GGNNCC	6 cut(s)	597, 1373, 1374, 1866, 1950, 2017
BspMI	ACCTGC	1 cut(s)	93
BspPI	GGATC	6 cut(s)	320, 465, 1703, 1943, 1956, 1977
BspQI	GCTCTTC	1 cut(s)	1059
BspTI	CTTAAG	1 cut(s)	554
BsrBI	CCGCTC	1 cut(s)	98
BsrGI	TGTACA	1 cut(s)	1332
BsrI	ACTGG	6 cut(s)	260, 597, 813, 1312, 1852, 2059
BssECI	CCNNGG	4 cut(s)	368, 435, 1081, 1860
BssMI	GATC	9 cut(s)	312, 457, 691, 1657, 1708, 1726, 1785, 1948, 1969
BssNI	GRCGYC	1 cut(s)	2028
BssSI	CACGAG	1 cut(s)	508
BssT1I	CCWWGG	2 cut(s)	435, 1081
Bst2BI	CACGAG	1 cut(s)	508
Bst2UI	CCWGG	3 cut(s)	369, 1047, 1347
Bst4CI	ACNGT	3 cut(s)	350, 1794, 1845
Bst6I	CTCTTC	4 cut(s)	948, 1059, 1081, 1638
BstACI	GRCGYC	1 cut(s)	2028
BstAFI	CTTAAG	1 cut(s)	554
BstAPI	GCANNNNNTGC	1 cut(s)	1690
BstAUI	TGTACA	1 cut(s)	1332
BstBAI	YACGTR	1 cut(s)	1223
BstC8I	GCNNGC	5 cut(s)	32, 883, 1071, 1075, 1482
BstDEI	CTNAG	2 cut(s)	1679, 1782
BstDSI	CCRYGG	1 cut(s)	435
BstENI	CCTNNNNNAGG	1 cut(s)	1380
BstF5I	GGATG	7 cut(s)	1183, 1207, 1442, 1560, 1630, 1834, 2074
BstHHI	GCGC	1 cut(s)	1834
BstKTI	GATC	9 cut(s)	315, 460, 694, 1660, 1711, 1729, 1788, 1951, 1972
BstMAI	GTCTC	2 cut(s)	717, 1306
BstMBI	GATC	9 cut(s)	312, 457, 691, 1657, 1708, 1726, 1785, 1948, 1969
BstMCI	CGRYCG	1 cut(s)	203
BstMWI	GCNNNNNNNGC	6 cut(s)	251, 399, 408, 1501, 1670, 1690
BstNI	CCWGG	3 cut(s)	369, 1047, 1347
BstNSI	RCATGY	1 cut(s)	1484
BstSCI	CCNGG	4 cut(s)	367, 1045, 1345, 1859
BstSFI	CTRYAG	1 cut(s)	1359
BstSLI	GKGCMC	1 cut(s)	1900
BstV1I	GCAGC	2 cut(s)	165, 1682
BstV2I	GAAGAC	1 cut(s)	154
BstX2I	RGATCY	2 cut(s)	312, 1948
BstYI	RGATCY	2 cut(s)	312, 1948
BstZI	CGGCCG	1 cut(s)	200
BsuI	GTATCC	2 cut(s)	778, 955
BsuRI	GGCC	5 cut(s)	22, 63, 74, 202, 1114
BtgI	CCRYGG	1 cut(s)	435
BtsCI	GGATG	7 cut(s)	1183, 1207, 1442, 1560, 1630, 1834, 2074
BtsIMutI	CAGTG	3 cut(s)	113, 1029, 1859
BveI	ACCTGC	1 cut(s)	93
Cac8I	GCNNGC	5 cut(s)	32, 883, 1071, 1075, 1482
CaiI	CAGNNNCTG	1 cut(s)	1958
CfoI	GCGC	1 cut(s)	1834
Cfr13I	GGNCC	4 cut(s)	1043, 1372, 1857, 1865
CseI	GACGC	1 cut(s)	2036
CspCI	CAANNNNNGTGG	4 cut(s)	371, 406, 962, 997
CviAII	CATG	9 cut(s)	248, 436, 673, 1162, 1481, 1685, 1817, 2065, 2094
DdeI	CTNAG	2 cut(s)	1679, 1782
DpnI	GATC	9 cut(s)	314, 459, 693, 1659, 1710, 1728, 1787, 1950, 1971
DpnII	GATC	9 cut(s)	312, 457, 691, 1657, 1708, 1726, 1785, 1948, 1969
DraIII	CACNNNGTG	1 cut(s)	605
DriI	GACNNNNNGTC	1 cut(s)	1863
EaeI	YGGCCR	2 cut(s)	200, 1112
EagI	CGGCCG	1 cut(s)	200
Eam1104I	CTCTTC	4 cut(s)	948, 1059, 1081, 1638
Eam1105I	GACNNNNNGTC	1 cut(s)	1863
EarI	CTCTTC	4 cut(s)	948, 1059, 1081, 1638
EclXI	CGGCCG	1 cut(s)	200
Eco130I	CCWWGG	2 cut(s)	435, 1081
Eco32I	GATATC	2 cut(s)	642, 835
Eco47I	GGWCC	4 cut(s)	1043, 1372, 1857, 1865
Eco52I	CGGCCG	1 cut(s)	200
Eco57I	CTGAAG	2 cut(s)	972, 1083
EcoNI	CCTNNNNNAGG	1 cut(s)	1380
EcoO109I	RGGNCCY	2 cut(s)	1372, 1865
EcoRII	CCWGG	3 cut(s)	367, 1045, 1345
EcoRV	GATATC	2 cut(s)	642, 835
EcoT14I	CCWWGG	2 cut(s)	435, 1081
EcoT22I	ATGCAT	1 cut(s)	1267
ErhI	CCWWGG	2 cut(s)	435, 1081
Esp3I	CGTCTC	1 cut(s)	717
FaeI	CATG	9 cut(s)	251, 439, 676, 1165, 1484, 1688, 1820, 2068, 2097
FalI	AAGNNNNNCTT	4 cut(s)	23, 55, 1505, 1537
FaqI	GGGAC	3 cut(s)	767, 1358, 1722
FatI	CATG	9 cut(s)	247, 435, 672, 1161, 1480, 1684, 1816, 2064, 2093
FauI	CCCGC	1 cut(s)	2005
FbaI	TGATCA	2 cut(s)	691, 1726
Fnu4HI	GCNGC	4 cut(s)	154, 203, 1078, 1671
FokI	GGATG	7 cut(s)	1190, 1214, 1449, 1567, 1637, 1821, 2081
Fsp4HI	GCNGC	4 cut(s)	154, 203, 1078, 1671
FspBI	CTAG	3 cut(s)	587, 1058, 1839
GlaI	GCGC	1 cut(s)	1833
GluI	GCNGC	4 cut(s)	154, 203, 1078, 1671
GsaI	CCCAGC	1 cut(s)	1962
GsuI	CTGGAG	1 cut(s)	1517
HaeIII	GGCC	5 cut(s)	22, 63, 74, 202, 1114
HapII	CCGG	4 cut(s)	60, 214, 1276, 1860
HgaI	GACGC	1 cut(s)	2036
HhaI	GCGC	1 cut(s)	1834
Hin1I	GRCGYC	1 cut(s)	2028
Hin1II	CATG	9 cut(s)	251, 439, 676, 1165, 1484, 1688, 1820, 2068, 2097
Hin6I	GCGC	1 cut(s)	1832
HinP1I	GCGC	1 cut(s)	1832
HincII	GTYRAC	1 cut(s)	1356
HindII	GTYRAC	1 cut(s)	1356
HindIII	AAGCTT	1 cut(s)	731
HinfI	GANTC	6 cut(s)	334, 413, 1104, 1279, 1628, 1768
HpaII	CCGG	4 cut(s)	60, 214, 1276, 1860
HphI	GGTGA	4 cut(s)	362, 701, 1265, 1361
Hpy166II	GTNNAC	7 cut(s)	498, 905, 1356, 1697, 1857, 1898, 1988
Hpy188III	TCNNGA	6 cut(s)	214, 316, 752, 1655, 1946, 1952
Hpy8I	GTNNAC	7 cut(s)	498, 905, 1356, 1697, 1857, 1898, 1988
Hpy99I	CGWCG	1 cut(s)	2030
HpyAV	CCTTC	9 cut(s)	49, 132, 151, 313, 842, 952, 1000, 1180, 1987
HpyCH4III	ACNGT	3 cut(s)	350, 1794, 1845
HpyCH4IV	ACGT	3 cut(s)	1222, 1531, 1735
HpyF10VI	GCNNNNNNNGC	6 cut(s)	251, 399, 408, 1501, 1670, 1690
HpyF3I	CTNAG	2 cut(s)	1679, 1782
HpySE526I	ACGT	3 cut(s)	1222, 1531, 1735
Hsp92I	GRCGYC	1 cut(s)	2028
Hsp92II	CATG	9 cut(s)	251, 439, 676, 1165, 1484, 1688, 1820, 2068, 2097
HspAI	GCGC	1 cut(s)	1832
KflI	GGGWCCC	1 cut(s)	1372
Kpn2I	TCCGGA	1 cut(s)	213
Ksp22I	TGATCA	2 cut(s)	691, 1726
Kzo9I	GATC	9 cut(s)	312, 457, 691, 1657, 1708, 1726, 1785, 1948, 1969
LguI	GCTCTTC	1 cut(s)	1059
LmnI	GCTCC	3 cut(s)	103, 922, 1477
Lsp1109I	GCAGC	2 cut(s)	165, 1682
LweI	GCATC	7 cut(s)	1019, 1135, 1192, 1252, 1393, 1764, 1843
MaeI	CTAG	3 cut(s)	587, 1058, 1839
MaeII	ACGT	3 cut(s)	1222, 1531, 1735
MaeIII	GTNAC	1 cut(s)	1363
MalI	GATC	9 cut(s)	314, 459, 693, 1659, 1710, 1728, 1787, 1950, 1971
MbiI	CCGCTC	1 cut(s)	98
MboI	GATC	9 cut(s)	312, 457, 691, 1657, 1708, 1726, 1785, 1948, 1969
MboII	GAAGA	8 cut(s)	154, 222, 887, 965, 1076, 1098, 1577, 1625
MflI	RGATCY	2 cut(s)	312, 1948
MhlI	GDGCHC	3 cut(s)	919, 1900, 2093
MlsI	TGGCCA	1 cut(s)	1114
MluNI	TGGCCA	1 cut(s)	1114
MlyI	GAGTC	3 cut(s)	1113, 1273, 1777
MmeI	TCCRAC	1 cut(s)	1414
Mox20I	TGGCCA	1 cut(s)	1114
Mph1103I	ATGCAT	1 cut(s)	1267
MroI	TCCGGA	1 cut(s)	213
MroXI	GAANNNNTTC	3 cut(s)	1212, 1247, 1517
MscI	TGGCCA	1 cut(s)	1114
MseI	TTAA	3 cut(s)	555, 1001, 1592
Msp20I	TGGCCA	1 cut(s)	1114
MspCI	CTTAAG	1 cut(s)	554
MspI	CCGG	4 cut(s)	60, 214, 1276, 1860
MspR9I	CCNGG	4 cut(s)	369, 1047, 1347, 1861
MvaI	CCWGG	3 cut(s)	369, 1047, 1347
MwoI	GCNNNNNNNGC	6 cut(s)	251, 399, 408, 1501, 1670, 1690
NciI	CCSGG	1 cut(s)	1861
NcoI	CCATGG	1 cut(s)	435
NdeII	GATC	9 cut(s)	312, 457, 691, 1657, 1708, 1726, 1785, 1948, 1969
NlaIII	CATG	9 cut(s)	251, 439, 676, 1165, 1484, 1688, 1820, 2068, 2097
NlaIV	GGNNCC	6 cut(s)	597, 1373, 1374, 1866, 1950, 2017
NsiI	ATGCAT	1 cut(s)	1267
NspI	RCATGY	1 cut(s)	1484
PaeI	GCATGC	1 cut(s)	1484
PaqCI	CACCTGC	1 cut(s)	93
PciSI	GCTCTTC	1 cut(s)	1059
PcsI	WCGNNNNNNNCGW	2 cut(s)	1257, 1996
PdmI	GAANNNNTTC	3 cut(s)	1212, 1247, 1517
PfeI	GAWTC	3 cut(s)	334, 413, 1628
Pfl23II	CGTACG	1 cut(s)	2040
PflMI	CCANNNNNTGG	1 cut(s)	1958
PkrI	GCNGC	4 cut(s)	155, 204, 1079, 1672
PleI	GAGTC	3 cut(s)	1112, 1273, 1776
PpsI	GAGTC	3 cut(s)	1112, 1273, 1776
Ppu21I	YACGTR	1 cut(s)	1223
PpuMI	RGGWCCY	2 cut(s)	1372, 1865
Psp1406I	AACGTT	1 cut(s)	1531
Psp5II	RGGWCCY	2 cut(s)	1372, 1865
Psp6I	CCWGG	3 cut(s)	367, 1045, 1345
PspFI	CCCAGC	1 cut(s)	1958
PspGI	CCWGG	3 cut(s)	367, 1045, 1345
PspLI	CGTACG	1 cut(s)	2040
PspN4I	GGNNCC	6 cut(s)	597, 1373, 1374, 1866, 1950, 2017
PspPI	GGNCC	4 cut(s)	1043, 1372, 1857, 1865
PspPPI	RGGWCCY	2 cut(s)	1372, 1865
PstNI	CAGNNNCTG	1 cut(s)	1958
PsuI	RGATCY	2 cut(s)	312, 1948
SapI	GCTCTTC	1 cut(s)	1059
SaqAI	TTAA	3 cut(s)	555, 1001, 1592
SatI	GCNGC	4 cut(s)	154, 203, 1078, 1671
Sau3AI	GATC	9 cut(s)	312, 457, 691, 1657, 1708, 1726, 1785, 1948, 1969
Sau96I	GGNCC	4 cut(s)	1043, 1372, 1857, 1865
ScaI	AGTACT	2 cut(s)	998, 1677
SchI	GAGTC	3 cut(s)	1113, 1273, 1777
ScrFI	CCNGG	4 cut(s)	369, 1047, 1347, 1861
SduI	GDGCHC	3 cut(s)	919, 1900, 2093
SfaNI	GCATC	7 cut(s)	1019, 1135, 1192, 1252, 1393, 1764, 1843
SfcI	CTRYAG	1 cut(s)	1359
SinI	GGWCC	4 cut(s)	1043, 1372, 1857, 1865
SmlI	CTYRAG	2 cut(s)	89, 554
SmoI	CTYRAG	2 cut(s)	89, 554
SphI	GCATGC	1 cut(s)	1484
SsiI	CCGC	5 cut(s)	28, 96, 203, 1078, 2012
SspMI	CTAG	3 cut(s)	587, 1058, 1839
StyD4I	CCNGG	4 cut(s)	367, 1045, 1345, 1859
StyI	CCWWGG	2 cut(s)	435, 1081
TaaI	ACNGT	3 cut(s)	350, 1794, 1845
TaiI	ACGT	3 cut(s)	1225, 1534, 1738
TaqI	TCGA	4 cut(s)	179, 759, 1251, 1260
TaqII	GACCGA	1 cut(s)	1766
TatI	WGTACW	9 cut(s)	375, 683, 996, 1021, 1164, 1332, 1447, 1675, 1975
TauI	GCSGC	2 cut(s)	205, 1080
TfiI	GAWTC	3 cut(s)	334, 413, 1628
Tru1I	TTAA	3 cut(s)	555, 1001, 1592
Tru9I	TTAA	3 cut(s)	555, 1001, 1592
TscAI	CASTG	3 cut(s)	120, 1036, 1859
TseI	GCWGC	2 cut(s)	153, 1670
TspDTI	ATGAA	4 cut(s)	1269, 1894, 1925, 2053
TspGWI	ACGGA	5 cut(s)	237, 741, 1145, 1567, 2005
TspRI	CASTG	3 cut(s)	120, 1036, 1859
Van91I	CCANNNNNTGG	1 cut(s)	1958
Vha464I	CTTAAG	1 cut(s)	554
VneI	GTGCAC	1 cut(s)	1896
VpaK11BI	GGWCC	4 cut(s)	1043, 1372, 1857, 1865
XagI	CCTNNNNNAGG	1 cut(s)	1380
XapI	RAATTY	3 cut(s)	195, 1442, 1568
XceI	RCATGY	1 cut(s)	1484
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1644
XmnI	GAANNNNTTC	3 cut(s)	1212, 1247, 1517
XspI	CTAG	3 cut(s)	587, 1058, 1839
ZrmI	AGTACT	2 cut(s)	998, 1677
Zsp2I	ATGCAT	1 cut(s)	1267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.