pycom10g20970

U3 small nucleolar RNA-interacting protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
23709923 .. 23712363
2441 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 969 bp
ATGAAGTACTTAAGTCCCATGGGGTCAAGGATCGATCCACAAGGTCGAGCTAAAAAGCATAGTAAACACGTGTTAGCACTAGCAGTTAGCTCTGATGGTCGGTATTTGGCAAGCGGGGGCTTAGATCGCCATGTTCATTTGTGGGATACTCGTACACGAGAGCATATTCTGGCTTTTCCAGGTCACAGGGGCCCCGTTTCATGTTTAACTTTCAGGCAAGGGTCTTCAGAACTTTTTTCTGGTTCATATGATCGATCAGTTAAGATATGGAATGTAGAAGATAGAGCTTACATAAACACATTATTTGGTCATCAAGGGGAAGTATTAAGTATTGATTGCCTACGGAAAGAAAGGGTATTGACTGTTGGACATGATCGAAGCATGCAGTTATTTAAGGTCCCAGAGGAGTCACGTTTAGTATTCCGTGCCCCTGCATCTTCGTTGGAATGTTGTTGTTTTATCAGCAATGACGAATTCTTATCCGGCTCTGATGATGGAAGTGTTGAGCTTTGGAACATGGTGCGGAAGAAGCCTGTTTGCATAGTTAAGAATGCTCATCCTTTATTGGCTGCACACAAAGAAGTCGAACAAAAGGATGGTGATAGAATCCCAAATGGTCACATAGAAAATGGTGACCACACTTCTGAAAGCTTTGATTGTTCATCAACCAATTCTTGGATCAGTTCAGTCACTGTTTGTAGAGGCAGTGACCTCGCTGCATCAGGAGCTGGGAATGGCTCTGTTCGATTATGGGCTATTGAAAGTGAGAGCAGAGTGCTTCGGCCGTTACACAACATCCCATTGGTTGGATTTGTGAATTCTTTAGCTTCTGCAAAATCTGGACGGTTTCTGGTTGCAGGAGTTGGGAAGGAACCTCGTCTAGGAAGGTGGGGACATAACCCAGCTGCTCGTAACGGAATCGCAATCCATTCCATTAAGCTTTCATCAGAAGATACAAACACTCTCTAA

Protein Analysis

323

Amino Acids

35.39

Weight (kDa)

8.77

Isoelectric Point (pI)

42.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_TEP1_2nd PF25047 10 - 131 5.3e-15 TEP-1 second beta-propeller
WD40_CDC20-Fz PF24807 14 - 134 6.8e-16 CDC20/Fizzy WD40 domain
Beta-prop_THOC3 PF25174 16 - 101 3.5e-16 THOC3 beta-propeller domain
Beta-prop_WDR5 PF25175 17 - 179 3.2e-25 WDR5 beta-propeller domain
WDR55 PF24796 17 - 183 1.8e-14 WDR55
Beta-prop_CAF1B_HIR1 PF24105 18 - 135 2.5e-06 CAF1B/HIR1 beta-propeller domain
WD40 PF00400 19 - 49 1.5e-07 WD domain, G-beta repeat
WD40_MABP1-WDR62_2nd PF24782 19 - 134 6.7e-09 MABP1/WDR62 second WD40 domain
Beta-prop_EML PF23409 19 - 186 2.6e-11 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_EML_2 PF23414 19 - 131 5.8e-09 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st PF25173 19 - 133 1.8e-24 WDR3 first beta-propeller domain
WD40_Gbeta PF25391 20 - 174 7.9e-14 G protein beta WD-40 repeat protein
Beta-prop_WDR3_2nd PF25172 20 - 136 2.1e-14 WDR3 second beta-propeller domain
EIF3I PF24805 20 - 100 5e-07 EIF3I
Beta-prop_WDR36-Utp21_1st PF25171 20 - 130 8.6e-08 WDR36/Utp21 first beta-propeller
WD40_Prp19 PF24814 21 - 112 3.2e-14 Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 35 - 128 4.1e-06 WDR36/Utp21 second beta-propeller domain
WD40 PF00400 56 - 91 8.7e-08 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 62 - 176 2e-09 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012065)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 675, 806
AciI CCGC 2 cut(s) 114, 523
AclWI GGATC 3 cut(s) 29, 38, 686
AcoI YGGCCR 1 cut(s) 782
AcsI RAATTY 2 cut(s) 473, 817
AcuI CTGAAG 1 cut(s) 210
AcvI CACGTG 1 cut(s) 70
AfaI GTAC 2 cut(s) 8, 154
AfiI CCNNNNNNNGG 3 cut(s) 675, 806, 881
AflII CTTAAG 1 cut(s) 10
AflIII ACRYGT 2 cut(s) 67, 69
AgsI TTSAA 1 cut(s) 761
AjnI CCWGG 1 cut(s) 178
AluBI AGCT 9 cut(s) 50, 90, 287, 508, 651, 728, 827, 905, 940
AluI AGCT 9 cut(s) 50, 90, 287, 508, 651, 728, 827, 905, 940
AlwI GGATC 3 cut(s) 29, 38, 686
AlwNI CAGNNNCTG 2 cut(s) 692, 728
AoxI GGCC 2 cut(s) 190, 782
ApaI GGGCCC 1 cut(s) 194
ApeKI GCWGC 3 cut(s) 569, 716, 905
ApoI RAATTY 2 cut(s) 473, 817
AspS9I GGNCC 3 cut(s) 190, 191, 397
AsuHPI GGTGA 2 cut(s) 611, 644
AvaII GGWCC 1 cut(s) 397
BaeGI GKGCMC 2 cut(s) 194, 430
BanII GRGCYC 1 cut(s) 194
BauI CACGAG 1 cut(s) 156
BbrPI CACGTG 1 cut(s) 70
BbsI GAAGAC 1 cut(s) 216
BbvI GCAGC 3 cut(s) 556, 703, 892
BccI CCATC 3 cut(s) 89, 488, 590
BceAI ACGGC 1 cut(s) 769
BcgI CGANNNNNNTGC 2 cut(s) 694, 728
BciT130I CCWGG 1 cut(s) 180
BciVI GTATCC 1 cut(s) 139
BfaI CTAG 2 cut(s) 80, 881
BfrI CTTAAG 1 cut(s) 10
BfuI GTATCC 1 cut(s) 139
BisI GCNGC 3 cut(s) 570, 717, 906
BlsI GCNGC 3 cut(s) 571, 718, 907
BmcAI AGTACT 1 cut(s) 8
Bme1390I CCNGG 1 cut(s) 180
Bme18I GGWCC 1 cut(s) 397
BmgT120I GGNCC 3 cut(s) 190, 191, 397
BmiI GGNNCC 5 cut(s) 191, 192, 193, 399, 873
BmrFI CCNGG 1 cut(s) 180
BmsI GCATC 2 cut(s) 443, 728
BpiI GAAGAC 1 cut(s) 216
Bsa29I ATCGAT 2 cut(s) 33, 253
BsaAI YACGTR 1 cut(s) 70
BsaJI CCNNGG 1 cut(s) 18
Bsc4I CCNNNNNNNGG 3 cut(s) 675, 806, 881
Bse3DI GCAATG 1 cut(s) 472
BseBI CCWGG 1 cut(s) 180
BseCI ATCGAT 2 cut(s) 33, 253
BseDI CCNNGG 1 cut(s) 18
BseGI GGATG 3 cut(s) 556, 601, 795
BseLI CCNNNNNNNGG 3 cut(s) 675, 806, 881
BseMI GCAATG 1 cut(s) 472
BseRI GAGGAG 1 cut(s) 419
BseSI GKGCMC 2 cut(s) 194, 430
BseX3I CGGCCG 1 cut(s) 782
BseXI GCAGC 3 cut(s) 556, 703, 892
BseYI CCCAGC 2 cut(s) 728, 901
BsgI GTGCAG 1 cut(s) 555
Bsh1285I CGRYCG 1 cut(s) 785
BshFI GGCC 2 cut(s) 192, 784
BshVI ATCGAT 2 cut(s) 33, 253
BsiEI CGRYCG 1 cut(s) 785
BsiSI CCGG 1 cut(s) 483
BslFI GGGAC 2 cut(s) 383, 906
BslI CCNNNNNNNGG 3 cut(s) 675, 806, 881
BsmFI GGGAC 2 cut(s) 383, 906
BsmI GAATGC 1 cut(s) 556
BsnI GGCC 2 cut(s) 192, 784
Bsp120I GGGCCC 1 cut(s) 190
Bsp1286I GDGCHC 2 cut(s) 194, 430
Bsp143I GATC 7 cut(s) 30, 34, 124, 250, 254, 373, 678
Bsp19I CCATGG 1 cut(s) 18
BspACI CCGC 2 cut(s) 114, 523
BspANI GGCC 2 cut(s) 192, 784
BspDI ATCGAT 2 cut(s) 33, 253
BspLI GGNNCC 5 cut(s) 191, 192, 193, 399, 873
BspPI GGATC 3 cut(s) 29, 38, 686
BspTI CTTAAG 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 472
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 7 cut(s) 30, 34, 124, 250, 254, 373, 678
BssSI CACGAG 1 cut(s) 156
BssT1I CCWWGG 1 cut(s) 18
Bst2BI CACGAG 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 3 cut(s) 364, 694, 846
BstAFI CTTAAG 1 cut(s) 10
BstBAI YACGTR 1 cut(s) 70
BstC8I GCNNGC 2 cut(s) 112, 383
BstDEI CTNAG 1 cut(s) 121
BstDSI CCRYGG 1 cut(s) 18
BstEII GGTNACC 1 cut(s) 632
BstENI CCTNNNNNAGG 1 cut(s) 879
BstF5I GGATG 3 cut(s) 556, 601, 795
BstKTI GATC 7 cut(s) 33, 37, 127, 253, 257, 376, 681
BstMBI GATC 7 cut(s) 30, 34, 124, 250, 254, 373, 678
BstMCI CGRYCG 1 cut(s) 785
BstMWI GCNNNNNNNGC 3 cut(s) 126, 529, 725
BstNI CCWGG 1 cut(s) 180
BstNSI RCATGY 1 cut(s) 385
BstPI GGTNACC 1 cut(s) 632
BstSCI CCNGG 1 cut(s) 178
BstSLI GKGCMC 2 cut(s) 194, 430
BstV1I GCAGC 3 cut(s) 556, 703, 892
BstV2I GAAGAC 1 cut(s) 216
BstZI CGGCCG 1 cut(s) 782
Bsu15I ATCGAT 2 cut(s) 33, 253
BsuI GTATCC 1 cut(s) 139
BsuRI GGCC 2 cut(s) 192, 784
BsuTUI ATCGAT 2 cut(s) 33, 253
BtgI CCRYGG 1 cut(s) 18
BtsCI GGATG 3 cut(s) 556, 601, 795
BtsI GCAGTG 1 cut(s) 712
BtsIMutI CAGTG 2 cut(s) 690, 712
Cac8I GCNNGC 2 cut(s) 112, 383
CaiI CAGNNNCTG 2 cut(s) 692, 728
Cfr13I GGNCC 3 cut(s) 190, 191, 397
ClaI ATCGAT 2 cut(s) 33, 253
Csp6I GTAC 2 cut(s) 7, 153
CviAII CATG 6 cut(s) 19, 131, 201, 371, 382, 517
CviQI GTAC 2 cut(s) 7, 153
DdeI CTNAG 1 cut(s) 121
DpnI GATC 7 cut(s) 32, 36, 126, 252, 256, 375, 680
DpnII GATC 7 cut(s) 30, 34, 124, 250, 254, 373, 678
EaeI YGGCCR 1 cut(s) 782
EagI CGGCCG 1 cut(s) 782
EclXI CGGCCG 1 cut(s) 782
Eco130I CCWWGG 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 397
Eco52I CGGCCG 1 cut(s) 782
Eco57I CTGAAG 1 cut(s) 210
Eco72I CACGTG 1 cut(s) 70
Eco91I GGTNACC 1 cut(s) 632
EcoNI CCTNNNNNAGG 1 cut(s) 879
EcoO109I RGGNCCY 3 cut(s) 190, 191, 397
EcoO65I GGTNACC 1 cut(s) 632
EcoRI GAATTC 2 cut(s) 473, 817
EcoRII CCWGG 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 6 cut(s) 22, 134, 204, 374, 385, 520
FaqI GGGAC 2 cut(s) 383, 906
FatI CATG 6 cut(s) 18, 130, 200, 370, 381, 516
FauI CCCGC 1 cut(s) 107
FauNDI CATATG 1 cut(s) 247
Fnu4HI GCNGC 3 cut(s) 570, 717, 906
FokI GGATG 3 cut(s) 543, 608, 782
FriOI GRGCYC 1 cut(s) 194
Fsp4HI GCNGC 3 cut(s) 570, 717, 906
FspBI CTAG 2 cut(s) 80, 881
GluI GCNGC 3 cut(s) 570, 717, 906
GsaI CCCAGC 2 cut(s) 732, 905
HaeIII GGCC 2 cut(s) 192, 784
HapII CCGG 1 cut(s) 483
Hin1II CATG 6 cut(s) 22, 134, 204, 374, 385, 520
HindIII AAGCTT 2 cut(s) 649, 938
HinfI GANTC 3 cut(s) 407, 606, 918
HpaII CCGG 1 cut(s) 483
HphI GGTGA 2 cut(s) 611, 644
Hpy166II GTNNAC 2 cut(s) 65, 155
Hpy188I TCNGA 5 cut(s) 94, 229, 490, 646, 949
Hpy188III TCNNGA 2 cut(s) 723, 840
Hpy8I GTNNAC 2 cut(s) 65, 155
HpyAV CCTTC 2 cut(s) 862, 879
HpyCH4III ACNGT 3 cut(s) 364, 694, 846
HpyCH4IV ACGT 2 cut(s) 69, 412
HpyCH4V TGCA 7 cut(s) 385, 434, 540, 572, 719, 833, 857
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 529, 725
HpyF3I CTNAG 1 cut(s) 121
HpySE526I ACGT 2 cut(s) 69, 412
Hsp92II CATG 6 cut(s) 22, 134, 204, 374, 385, 520
Kzo9I GATC 7 cut(s) 30, 34, 124, 250, 254, 373, 678
LmnI GCTCC 1 cut(s) 725
Lsp1109I GCAGC 3 cut(s) 556, 703, 892
LweI GCATC 2 cut(s) 443, 728
MaeI CTAG 2 cut(s) 80, 881
MaeII ACGT 2 cut(s) 69, 412
MaeIII GTNAC 8 cut(s) 182, 408, 617, 632, 688, 707, 786, 911
MalI GATC 7 cut(s) 32, 36, 126, 252, 256, 375, 680
MboI GATC 7 cut(s) 30, 34, 124, 250, 254, 373, 678
MboII GAAGA 5 cut(s) 216, 290, 429, 538, 962
MhlI GDGCHC 2 cut(s) 194, 430
MluCI AATT 3 cut(s) 473, 670, 817
MlyI GAGTC 1 cut(s) 416
MmeI TCCRAC 3 cut(s) 346, 423, 787
MnlI CCTC 4 cut(s) 397, 695, 722, 885
MseI TTAA 7 cut(s) 11, 206, 261, 326, 393, 546, 936
MspA1I CMGCKG 1 cut(s) 905
MspCI CTTAAG 1 cut(s) 10
MspI CCGG 1 cut(s) 483
MspR9I CCNGG 1 cut(s) 180
Mva1269I GAATGC 1 cut(s) 556
MvaI CCWGG 1 cut(s) 180
MwoI GCNNNNNNNGC 3 cut(s) 126, 529, 725
NcoI CCATGG 1 cut(s) 18
NdeI CATATG 1 cut(s) 247
NdeII GATC 7 cut(s) 30, 34, 124, 250, 254, 373, 678
NlaIII CATG 6 cut(s) 22, 134, 204, 374, 385, 520
NlaIV GGNNCC 5 cut(s) 191, 192, 193, 399, 873
NmuCI GTSAC 6 cut(s) 182, 408, 617, 632, 688, 707
NspI RCATGY 1 cut(s) 385
PaeI GCATGC 1 cut(s) 385
PctI GAATGC 1 cut(s) 556
PfeI GAWTC 2 cut(s) 606, 918
PflMI CCANNNNNTGG 2 cut(s) 675, 806
PkrI GCNGC 3 cut(s) 571, 718, 907
PleI GAGTC 1 cut(s) 415
PmaCI CACGTG 1 cut(s) 70
PmlI CACGTG 1 cut(s) 70
PpsI GAGTC 1 cut(s) 415
Ppu21I YACGTR 1 cut(s) 70
PpuMI RGGWCCY 1 cut(s) 397
Psp5II RGGWCCY 1 cut(s) 397
Psp6I CCWGG 1 cut(s) 178
PspCI CACGTG 1 cut(s) 70
PspEI GGTNACC 1 cut(s) 632
PspFI CCCAGC 2 cut(s) 728, 901
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 5 cut(s) 191, 192, 193, 399, 873
PspOMI GGGCCC 1 cut(s) 190
PspPI GGNCC 3 cut(s) 190, 191, 397
PspPPI RGGWCCY 1 cut(s) 397
PstNI CAGNNNCTG 2 cut(s) 692, 728
PvuII CAGCTG 1 cut(s) 905
RsaI GTAC 2 cut(s) 8, 154
RsaNI GTAC 2 cut(s) 7, 153
SaqAI TTAA 7 cut(s) 11, 206, 261, 326, 393, 546, 936
SatI GCNGC 3 cut(s) 570, 717, 906
Sau3AI GATC 7 cut(s) 30, 34, 124, 250, 254, 373, 678
Sau96I GGNCC 3 cut(s) 190, 191, 397
ScaI AGTACT 1 cut(s) 8
SchI GAGTC 1 cut(s) 416
ScrFI CCNGG 1 cut(s) 180
SduI GDGCHC 2 cut(s) 194, 430
SfaNI GCATC 2 cut(s) 443, 728
SinI GGWCC 1 cut(s) 397
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
SphI GCATGC 1 cut(s) 385
Sse9I AATT 3 cut(s) 473, 670, 817
SsiI CCGC 2 cut(s) 114, 523
SspMI CTAG 2 cut(s) 80, 881
StyD4I CCNGG 1 cut(s) 178
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 3 cut(s) 364, 694, 846
TaiI ACGT 2 cut(s) 72, 415
TaqI TCGA 6 cut(s) 33, 46, 253, 376, 585, 745
TasI AATT 3 cut(s) 473, 670, 817
TatI WGTACW 1 cut(s) 6
TfiI GAWTC 2 cut(s) 606, 918
Tru1I TTAA 7 cut(s) 11, 206, 261, 326, 393, 546, 936
Tru9I TTAA 7 cut(s) 11, 206, 261, 326, 393, 546, 936
TscAI CASTG 2 cut(s) 697, 712
TseFI GTSAC 6 cut(s) 182, 408, 617, 632, 688, 707
TseI GCWGC 3 cut(s) 569, 716, 905
Tsp45I GTSAC 6 cut(s) 182, 408, 617, 632, 688, 707
TspDTI ATGAA 6 cut(s) 17, 125, 189, 234, 651, 933
TspGWI ACGGA 3 cut(s) 358, 413, 930
TspRI CASTG 2 cut(s) 697, 712
Van91I CCANNNNNTGG 2 cut(s) 675, 806
Vha464I CTTAAG 1 cut(s) 10
VpaK11BI GGWCC 1 cut(s) 397
XagI CCTNNNNNAGG 1 cut(s) 879
XapI RAATTY 2 cut(s) 473, 817
XceI RCATGY 1 cut(s) 385
XspI CTAG 2 cut(s) 80, 881
ZrmI AGTACT 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.