pycom10g21510

C3HC zinc finger-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
24099162 .. 24102766
3605 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1374 bp
ATGAGAGAGGAGGTCATCAGCTCCGGAGGGAACATTGATCCTGCTCCTGCTGCCAGTTCGGCGGGGGCATCGTCGCCGACTGTTCCGGCAAATGTGGGCAGTGTAGACGGGTCTATTCATGGACAAGGCTCCAAAGGAGCATCTATATCTTGTGTTGGTTCGCAACCACCGGTGACTTCTTTGAGCACCAGTGCTGGCGGTGGTGGGGGTGGGGATAGTTCTGTTTTTGGATCATCAAGGCTGTCGTGTAGACCTTGGGAAAGAGGCGACTTACTGCGCCGCTTGGCTACTTTTAAACCTTCAAATTGGTTTTCAAAGCCCAAGGTCATCAGTTCATTGGCATGTGCTCGGAGAGGTTGGGTGAATGTTGATGTGGATAAAATTGCATGTGAATCATGCGGTGCATCCTTTGGTTTTGCTTTGTTGCCATCTCGGACTCCTGACGAAGTTCAAAATGCAGGGGATGCCTTTGTCAAGCAGCTGGATTCCGGTCACAAAGTTGCTTGTCCTTGGAGAGGAAACAGCTGCCCAGAAAGCCTGGTGCAATTCCCTCCTACCCCTCAGTCCGCTTTAATTGGGGGATATAAGGATAGATGTGATGGACTTTTGCAATTCCACTCTCTACCTAAGGTAGCTGCATCTGCAATTGAGCAAATGTTGGTTTCTCGGGGTCCGCAGGTTGATCGCTTTCTTATGGCAGGGGAAGTAGATTTTAAACCAGAAAGTATACCAGAACAGGAAAGCTCCCGAGATGCATCGATCTGTTTATATTCTCGTGCTCAGAAGCTTATAAGTCTTTGTGGATGGGAACCAAGATGGCTTTTAAATGCACAAGACTGTGAAGAACATTCTGCCCAATCAGCTAGAAATGGATATTCTCTTGGGCCGACGTATGCCCAGGTCCATCTTTCACAAGAACCTGGACCAAGCAAGAAAGCAGTCTCTGCTTCTGCTAGAAAAGATGCTGGAAAGAGTAAAATGTTGGTTAAGGAATCTAGAGGTGATCCCAGATCACCCTTACTAGATTGCAGCTTATGTGGGGCTACAGTTAGAATATTGGATTTCTTAACCATTCCTCGACCTGTGCGATTTACTCCCAACAACATTGATATTCCTGACACAAGCAAAAAATTGGGATTGATACGTGGCGCAAGTGCAGCCAGTGGAATTAGTGGTTGGGTTGCTACTGATGATGCCGAGAAAGAACAGACTGAAGACCGTGATGAAGTAGCAACAACAACTGAGGGGAGCTTGTTTCCAAAAACAGATGTTGATTTGAATCTTACAATGGGAGGAGGTTTTACTTTTAATCGGTTTGGCAGACCAGAAATGTCAGAAAACATTCAGGATGCAGATATGGGAAGGGATCGATGA

Protein Analysis

458

Amino Acids

48.54

Weight (kDa)

6.06

Isoelectric Point (pI)

52.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC PF07967 85 - 209 2.7e-36 NuBaID N-terminal domain (aka zf-C3HC)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 791
Acc36I ACCTGC 1 cut(s) 667
AccI GTMKAC 3 cut(s) 105, 250, 727
AccIII TCCGGA 1 cut(s) 23
AciI CCGC 6 cut(s) 62, 198, 280, 399, 567, 674
AclWI GGATC 3 cut(s) 32, 238, 998
AcuI CTGAAG 1 cut(s) 1233
AfiI CCNNNNNNNGG 1 cut(s) 515
AgeI ACCGGT 1 cut(s) 169
AgsI TTSAA 4 cut(s) 303, 315, 452, 1279
AjnI CCWGG 3 cut(s) 537, 897, 919
AjuI GAANNNNNNNTTGG 2 cut(s) 1159, 1191
AluBI AGCT 9 cut(s) 21, 481, 525, 635, 744, 787, 863, 1032, 1251
AluI AGCT 9 cut(s) 21, 481, 525, 635, 744, 787, 863, 1032, 1251
Alw21I GWGCWC 3 cut(s) 188, 349, 781
Alw26I GTCTC 1 cut(s) 946
AlwI GGATC 3 cut(s) 32, 238, 998
AlwNI CAGNNNCTG 1 cut(s) 944
Ama87I CYCGRG 2 cut(s) 666, 747
Aor13HI TCCGGA 1 cut(s) 23
AoxI GGCC 1 cut(s) 884
ApeKI GCWGC 6 cut(s) 50, 478, 525, 635, 1029, 1157
AsiGI ACCGGT 1 cut(s) 169
Asp700I GAANNNNTTC 1 cut(s) 1341
AspLEI GCGC 2 cut(s) 279, 1151
AspS9I GGNCC 4 cut(s) 671, 884, 901, 923
AsuHPI GGTGA 4 cut(s) 184, 373, 1005, 1013
AvaI CYCGRG 2 cut(s) 666, 747
AvaII GGWCC 3 cut(s) 671, 901, 923
AxyI CCTNAGG 1 cut(s) 627
BauI CACGAG 1 cut(s) 774
BbsI GAAGAC 1 cut(s) 1221
Bbv12I GWGCWC 3 cut(s) 188, 349, 781
BbvI GCAGC 6 cut(s) 37, 490, 512, 622, 1041, 1169
BccI CCATC 5 cut(s) 436, 593, 798, 810, 912
BcgI CGANNNNNNTGC 2 cut(s) 665, 699
BciT130I CCWGG 3 cut(s) 539, 899, 921
BcoDI GTCTC 1 cut(s) 946
BfaI CTAG 4 cut(s) 864, 954, 996, 1022
BfmI CTRYAG 1 cut(s) 1044
BfuAI ACCTGC 1 cut(s) 667
BglI GCCNNNNNGGC 1 cut(s) 59
BisI GCNGC 7 cut(s) 51, 280, 479, 526, 636, 1030, 1158
BlsI GCNGC 7 cut(s) 52, 281, 480, 527, 637, 1031, 1159
Bme1390I CCNGG 3 cut(s) 539, 899, 921
Bme18I GGWCC 3 cut(s) 671, 901, 923
BmeT110I CYCGRG 2 cut(s) 666, 747
BmgT120I GGNCC 4 cut(s) 671, 884, 901, 923
BmiI GGNNCC 3 cut(s) 130, 672, 810
BmrFI CCNGG 3 cut(s) 539, 899, 921
BpiI GAAGAC 1 cut(s) 1221
Bsa29I ATCGAT 2 cut(s) 758, 1369
BsaAI YACGTR 1 cut(s) 1145
BsaBI GATNNNNATC 1 cut(s) 1278
BsaJI CCNNGG 4 cut(s) 254, 321, 509, 897
BsaWI WCCGGW 3 cut(s) 23, 169, 488
Bsc4I CCNNNNNNNGG 1 cut(s) 515
Bse118I RCCGGY 1 cut(s) 169
Bse1I ACTGG 3 cut(s) 54, 189, 1161
Bse21I CCTNAGG 1 cut(s) 627
Bse8I GATNNNNATC 1 cut(s) 1278
BseAI TCCGGA 1 cut(s) 23
BseBI CCWGG 3 cut(s) 539, 899, 921
BseCI ATCGAT 2 cut(s) 758, 1369
BseDI CCNNGG 4 cut(s) 254, 321, 509, 897
BseGI GGATG 4 cut(s) 404, 469, 809, 1354
BseJI GATNNNNATC 1 cut(s) 1278
BseLI CCNNNNNNNGG 1 cut(s) 515
BseMII CTCAG 3 cut(s) 575, 794, 1233
BseNI ACTGG 3 cut(s) 54, 189, 1161
BseRI GAGGAG 2 cut(s) 23, 1308
BseXI GCAGC 6 cut(s) 37, 490, 512, 622, 1041, 1169
BsgI GTGCAG 1 cut(s) 1176
BshFI GGCC 1 cut(s) 886
BshTI ACCGGT 1 cut(s) 169
BshVI ATCGAT 2 cut(s) 758, 1369
BsiHKAI GWGCWC 3 cut(s) 188, 349, 781
BsiHKCI CYCGRG 2 cut(s) 666, 747
BsiSI CCGG 4 cut(s) 24, 86, 170, 489
BslI CCNNNNNNNGG 1 cut(s) 515
BsmAI GTCTC 1 cut(s) 946
BsnI GGCC 1 cut(s) 886
BsoBI CYCGRG 2 cut(s) 666, 747
Bsp1286I GDGCHC 3 cut(s) 188, 349, 781
Bsp13I TCCGGA 1 cut(s) 23
Bsp143I GATC 7 cut(s) 37, 230, 682, 759, 1003, 1010, 1366
BspACI CCGC 6 cut(s) 62, 198, 280, 399, 567, 674
BspANI GGCC 1 cut(s) 886
BspCNI CTCAG 3 cut(s) 574, 793, 1234
BspDI ATCGAT 2 cut(s) 758, 1369
BspEI TCCGGA 1 cut(s) 23
BspLI GGNNCC 3 cut(s) 130, 672, 810
BspMI ACCTGC 1 cut(s) 667
BspPI GGATC 3 cut(s) 32, 238, 998
BsrFI RCCGGY 1 cut(s) 169
BsrI ACTGG 3 cut(s) 54, 189, 1161
BssAI RCCGGY 1 cut(s) 169
BssECI CCNNGG 4 cut(s) 254, 321, 509, 897
BssMI GATC 7 cut(s) 37, 230, 682, 759, 1003, 1010, 1366
BssNAI GTATAC 1 cut(s) 728
BssSI CACGAG 1 cut(s) 774
BssT1I CCWWGG 3 cut(s) 254, 321, 509
Bst1107I GTATAC 1 cut(s) 728
Bst2BI CACGAG 1 cut(s) 774
Bst2UI CCWGG 3 cut(s) 539, 899, 921
Bst4CI ACNGT 4 cut(s) 82, 839, 1048, 1220
BstAPI GCANNNNNTGC 2 cut(s) 464, 944
BstBAI YACGTR 1 cut(s) 1145
BstC8I GCNNGC 1 cut(s) 196
BstDEI CTNAG 4 cut(s) 561, 627, 780, 1242
BstENI CCTNNNNNAGG 1 cut(s) 513
BstF5I GGATG 4 cut(s) 404, 469, 809, 1354
BstHHI GCGC 2 cut(s) 279, 1151
BstKTI GATC 7 cut(s) 40, 233, 685, 762, 1006, 1013, 1369
BstMAI GTCTC 1 cut(s) 946
BstMBI GATC 7 cut(s) 37, 230, 682, 759, 1003, 1010, 1366
BstMWI GCNNNNNNNGC 8 cut(s) 50, 59, 464, 534, 641, 860, 944, 1157
BstNI CCWGG 3 cut(s) 539, 899, 921
BstNSI RCATGY 2 cut(s) 345, 390
BstSCI CCNGG 3 cut(s) 537, 897, 919
BstSFI CTRYAG 1 cut(s) 1044
BstV1I GCAGC 6 cut(s) 37, 490, 512, 622, 1041, 1169
BstV2I GAAGAC 1 cut(s) 1221
BstZ17I GTATAC 1 cut(s) 728
Bsu15I ATCGAT 2 cut(s) 758, 1369
Bsu36I CCTNAGG 1 cut(s) 627
BsuRI GGCC 1 cut(s) 886
BsuTUI ATCGAT 2 cut(s) 758, 1369
BtsCI GGATG 4 cut(s) 404, 469, 809, 1354
BtsI GCAGTG 1 cut(s) 106
BtsIMutI CAGTG 3 cut(s) 106, 196, 1168
BveI ACCTGC 1 cut(s) 667
Cac8I GCNNGC 1 cut(s) 196
CaiI CAGNNNCTG 1 cut(s) 944
CfoI GCGC 2 cut(s) 279, 1151
Cfr10I RCCGGY 1 cut(s) 169
Cfr13I GGNCC 4 cut(s) 671, 884, 901, 923
ClaI ATCGAT 2 cut(s) 758, 1369
CspAI ACCGGT 1 cut(s) 169
CviAII CATG 4 cut(s) 119, 342, 387, 396
DdeI CTNAG 4 cut(s) 561, 627, 780, 1242
DpnI GATC 7 cut(s) 39, 232, 684, 761, 1005, 1012, 1368
DpnII GATC 7 cut(s) 37, 230, 682, 759, 1003, 1010, 1366
DraI TTTAAA 3 cut(s) 295, 715, 825
Eco130I CCWWGG 3 cut(s) 254, 321, 509
Eco47I GGWCC 3 cut(s) 671, 901, 923
Eco57I CTGAAG 1 cut(s) 1233
Eco81I CCTNAGG 1 cut(s) 627
Eco88I CYCGRG 2 cut(s) 666, 747
EcoNI CCTNNNNNAGG 1 cut(s) 513
EcoRII CCWGG 3 cut(s) 537, 897, 919
EcoT14I CCWWGG 3 cut(s) 254, 321, 509
EcoT22I ATGCAT 1 cut(s) 757
ErhI CCWWGG 3 cut(s) 254, 321, 509
FaeI CATG 4 cut(s) 122, 345, 390, 399
FatI CATG 4 cut(s) 118, 341, 386, 395
FauI CCCGC 1 cut(s) 55
FblI GTMKAC 3 cut(s) 105, 250, 727
Fnu4HI GCNGC 7 cut(s) 51, 280, 479, 526, 636, 1030, 1158
FokI GGATG 4 cut(s) 391, 476, 816, 1361
Fsp4HI GCNGC 7 cut(s) 51, 280, 479, 526, 636, 1030, 1158
FspBI CTAG 4 cut(s) 864, 954, 996, 1022
GlaI GCGC 2 cut(s) 278, 1150
GluI GCNGC 7 cut(s) 51, 280, 479, 526, 636, 1030, 1158
HaeIII GGCC 1 cut(s) 886
HapII CCGG 4 cut(s) 24, 86, 170, 489
HhaI GCGC 2 cut(s) 279, 1151
Hin1II CATG 4 cut(s) 122, 345, 390, 399
Hin6I GCGC 2 cut(s) 277, 1149
HinP1I GCGC 2 cut(s) 277, 1149
HindIII AAGCTT 1 cut(s) 785
HinfI GANTC 5 cut(s) 392, 436, 485, 992, 1279
HpaII CCGG 4 cut(s) 24, 86, 170, 489
HphI GGTGA 4 cut(s) 184, 373, 1005, 1013
Hpy166II GTNNAC 3 cut(s) 106, 251, 728
Hpy188I TCNGA 4 cut(s) 351, 435, 783, 1336
Hpy188III TCNNGA 6 cut(s) 24, 440, 747, 996, 1115, 1346
Hpy8I GTNNAC 3 cut(s) 106, 251, 728
Hpy99I CGWCG 2 cut(s) 76, 892
HpyAV CCTTC 2 cut(s) 309, 1356
HpyCH4III ACNGT 4 cut(s) 82, 839, 1048, 1220
HpyCH4IV ACGT 2 cut(s) 890, 1144
HpyF10VI GCNNNNNNNGC 8 cut(s) 50, 59, 464, 534, 641, 860, 944, 1157
HpyF3I CTNAG 4 cut(s) 561, 627, 780, 1242
HpySE526I ACGT 2 cut(s) 890, 1144
Hsp92II CATG 4 cut(s) 122, 345, 390, 399
HspAI GCGC 2 cut(s) 277, 1149
Kpn2I TCCGGA 1 cut(s) 23
Kzo9I GATC 7 cut(s) 37, 230, 682, 759, 1003, 1010, 1366
LmnI GCTCC 6 cut(s) 26, 49, 134, 137, 749, 1248
Lsp1109I GCAGC 6 cut(s) 37, 490, 512, 622, 1041, 1169
MaeI CTAG 4 cut(s) 864, 954, 996, 1022
MaeII ACGT 2 cut(s) 890, 1144
MaeIII GTNAC 2 cut(s) 172, 491
MalI GATC 7 cut(s) 39, 232, 684, 761, 1005, 1012, 1368
MboI GATC 7 cut(s) 37, 230, 682, 759, 1003, 1010, 1366
MboII GAAGA 2 cut(s) 854, 1226
MfeI CAATTG 1 cut(s) 645
MhlI GDGCHC 3 cut(s) 188, 349, 781
MluCI AATT 8 cut(s) 304, 381, 545, 573, 611, 645, 1130, 1167
MlyI GAGTC 1 cut(s) 430
Mph1103I ATGCAT 1 cut(s) 757
MroI TCCGGA 1 cut(s) 23
MroXI GAANNNNTTC 1 cut(s) 1341
MseI TTAA 7 cut(s) 294, 572, 714, 824, 987, 1067, 1308
MslI CAYNNNNRTG 1 cut(s) 340
MspA1I CMGCKG 2 cut(s) 481, 525
MspI CCGG 4 cut(s) 24, 86, 170, 489
MspR9I CCNGG 3 cut(s) 539, 899, 921
MunI CAATTG 1 cut(s) 645
MvaI CCWGG 3 cut(s) 539, 899, 921
MwoI GCNNNNNNNGC 8 cut(s) 50, 59, 464, 534, 641, 860, 944, 1157
NdeII GATC 7 cut(s) 37, 230, 682, 759, 1003, 1010, 1366
NlaIII CATG 4 cut(s) 122, 345, 390, 399
NlaIV GGNNCC 3 cut(s) 130, 672, 810
NmeAIII GCCGAG 1 cut(s) 1222
NmuCI GTSAC 2 cut(s) 172, 491
NsiI ATGCAT 1 cut(s) 757
NspI RCATGY 2 cut(s) 345, 390
PcsI WCGNNNNNNNCGW 1 cut(s) 1084
PdmI GAANNNNTTC 1 cut(s) 1341
PfeI GAWTC 4 cut(s) 392, 485, 992, 1279
PinAI ACCGGT 1 cut(s) 169
PkrI GCNGC 7 cut(s) 52, 281, 480, 527, 637, 1031, 1159
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
Ppu21I YACGTR 1 cut(s) 1145
PsiI TTATAA 1 cut(s) 791
Psp6I CCWGG 3 cut(s) 537, 897, 919
PspGI CCWGG 3 cut(s) 537, 897, 919
PspN4I GGNNCC 3 cut(s) 130, 672, 810
PspPI GGNCC 4 cut(s) 671, 884, 901, 923
PstNI CAGNNNCTG 1 cut(s) 944
PvuII CAGCTG 2 cut(s) 481, 525
RseI CAYNNNNRTG 1 cut(s) 340
SaqAI TTAA 7 cut(s) 294, 572, 714, 824, 987, 1067, 1308
SatI GCNGC 7 cut(s) 51, 280, 479, 526, 636, 1030, 1158
Sau3AI GATC 7 cut(s) 37, 230, 682, 759, 1003, 1010, 1366
Sau96I GGNCC 4 cut(s) 671, 884, 901, 923
SchI GAGTC 1 cut(s) 430
ScrFI CCNGG 3 cut(s) 539, 899, 921
SduI GDGCHC 3 cut(s) 188, 349, 781
SfcI CTRYAG 1 cut(s) 1044
SgrAI CRCCGGYG 1 cut(s) 169
SinI GGWCC 3 cut(s) 671, 901, 923
SmiMI CAYNNNNRTG 1 cut(s) 340
Sse9I AATT 8 cut(s) 304, 381, 545, 573, 611, 645, 1130, 1167
SsiI CCGC 6 cut(s) 62, 198, 280, 399, 567, 674
SspI AATATT 1 cut(s) 1056
SspMI CTAG 4 cut(s) 864, 954, 996, 1022
StyD4I CCNGG 3 cut(s) 537, 897, 919
StyI CCWWGG 3 cut(s) 254, 321, 509
TaaI ACNGT 4 cut(s) 82, 839, 1048, 1220
TaiI ACGT 2 cut(s) 893, 1147
TaqI TCGA 3 cut(s) 758, 1078, 1369
TasI AATT 8 cut(s) 304, 381, 545, 573, 611, 645, 1130, 1167
TauI GCSGC 1 cut(s) 282
TfiI GAWTC 4 cut(s) 392, 485, 992, 1279
Tru1I TTAA 7 cut(s) 294, 572, 714, 824, 987, 1067, 1308
Tru9I TTAA 7 cut(s) 294, 572, 714, 824, 987, 1067, 1308
TscAI CASTG 3 cut(s) 106, 196, 1168
TseFI GTSAC 2 cut(s) 172, 491
TseI GCWGC 6 cut(s) 50, 478, 525, 635, 1029, 1157
Tsp45I GTSAC 2 cut(s) 172, 491
TspDTI ATGAA 3 cut(s) 107, 324, 1239
TspRI CASTG 3 cut(s) 106, 196, 1168
VpaK11BI GGWCC 3 cut(s) 671, 901, 923
XagI CCTNNNNNAGG 1 cut(s) 513
XbaI TCTAGA 1 cut(s) 995
XceI RCATGY 2 cut(s) 345, 390
XmiI GTMKAC 3 cut(s) 105, 250, 727
XmnI GAANNNNTTC 1 cut(s) 1341
XspI CTAG 4 cut(s) 864, 954, 996, 1022
Zsp2I ATGCAT 1 cut(s) 757
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.