pycom10g22100

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0009324
Physical Location & Seq
Reverse (-)
24579278 .. 24579895
618 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 618 bp
ATGACGAAAATCACTTTAAACCTTTCCATGGTGTTGAATTTCAAACCTCTAGCATCTGCCCGAAGAATTTCATTATCTTCGACCAGACTGATCGATCGAATTCAGATTATGTTCAATCCTGAAATTTCCCACAAAATTACTGGTCCTGCCTTTAACCTCTGTGCAGCTTACATCCAAGACAATCTGGGATTGAACGAGGGAAATATTGACAATAGAGAAGCATCGTCTACTCTGAAGGAGGACTCCGATGATATTGATGCATTGCTGAGCTTGGAAGAGGAAGAGCTGGAAGATTATGATGAGGAAGAGGTCAGTACAGCCCGAACTCGTGGAAATTATGGGAGCTCATTCTCTGATTCTTGCTCCAGTTATGGTTTGAAAACCAAGAAGGAAGGGCTGTGTTCTTCACTTGAAAAATCTACTGCCATTGGTAGCAGTAGCAGCTGCAATAGTGAAAGGAAACGCCAGAAAATGAAGAAGATGGTGAGGGCGCTGAGAGGGATTGTACCTGGTGGGAATGAAATGAACACTGTCGCCGTTCTAGACGAAGCTGTTCAGTACCTGAAGTCTCTCAAGGTTGAGCTGCAGAAGCTTGGAGTTGAGAATTTGAACGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

22.64

Weight (kDa)

5.16

Isoelectric Point (pI)

43.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH_SAC51 PF23173 150 - 202 3.3e-18 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 227
AcsI RAATTY 5 cut(s) 37, 66, 99, 123, 604
AcuI CTGAAG 2 cut(s) 254, 584
AfaI GTAC 3 cut(s) 316, 507, 560
AfiI CCNNNNNNNGG 1 cut(s) 28
AgsI TTSAA 7 cut(s) 37, 43, 115, 193, 379, 413, 610
AjnI CCWGG 1 cut(s) 508
AluBI AGCT 8 cut(s) 167, 270, 286, 345, 444, 551, 583, 592
AluI AGCT 8 cut(s) 167, 270, 286, 345, 444, 551, 583, 592
Alw21I GWGCWC 1 cut(s) 347
Alw26I GTCTC 1 cut(s) 573
AlwNI CAGNNNCTG 1 cut(s) 562
ApeKI GCWGC 4 cut(s) 164, 441, 444, 583
ApoI RAATTY 5 cut(s) 37, 66, 99, 123, 604
Asp700I GAANNNNTTC 2 cut(s) 67, 552
AspLEI GCGC 1 cut(s) 493
AspS9I GGNCC 1 cut(s) 143
AsuHPI GGTGA 1 cut(s) 496
AvaII GGWCC 1 cut(s) 143
BanII GRGCYC 1 cut(s) 347
BauI CACGAG 1 cut(s) 327
Bbv12I GWGCWC 1 cut(s) 347
BbvI GCAGC 4 cut(s) 176, 431, 453, 570
BccI CCATC 1 cut(s) 475
BceAI ACGGC 1 cut(s) 521
BciT130I CCWGG 1 cut(s) 510
BcoDI GTCTC 1 cut(s) 573
BfaI CTAG 2 cut(s) 50, 542
BfmI CTRYAG 1 cut(s) 584
BfoI RGCGCY 1 cut(s) 494
BisI GCNGC 4 cut(s) 165, 442, 445, 584
BlpI GCTNAGC 1 cut(s) 266
BlsI GCNGC 4 cut(s) 166, 443, 446, 585
Bme1390I CCNGG 1 cut(s) 510
Bme18I GGWCC 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 143
BmrFI CCNGG 1 cut(s) 510
BmsI GCATC 3 cut(s) 62, 230, 247
BpmI CTGGAG 1 cut(s) 349
Bpu1102I GCTNAGC 1 cut(s) 266
BpuEI CTTGAG 1 cut(s) 557
Bsa29I ATCGAT 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse1I ACTGG 2 cut(s) 145, 366
Bse3DI GCAATG 1 cut(s) 260
BseBI CCWGG 1 cut(s) 510
BseCI ATCGAT 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 28
BseMI GCAATG 1 cut(s) 260
BseMII CTCAG 2 cut(s) 257, 485
BseNI ACTGG 2 cut(s) 145, 366
BseXI GCAGC 4 cut(s) 176, 431, 453, 570
BsgI GTGCAG 1 cut(s) 183
Bsh1285I CGRYCG 1 cut(s) 97
BshVI ATCGAT 1 cut(s) 93
BsiEI CGRYCG 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 347
BslI CCNNNNNNNGG 1 cut(s) 28
BsmAI GTCTC 1 cut(s) 573
Bsp1286I GDGCHC 1 cut(s) 347
Bsp143I GATC 2 cut(s) 90, 94
Bsp1720I GCTNAGC 1 cut(s) 266
Bsp19I CCATGG 1 cut(s) 27
BspCNI CTCAG 2 cut(s) 258, 486
BspDI ATCGAT 1 cut(s) 93
BspMAI CTGCAG 1 cut(s) 588
BspQI GCTCTTC 1 cut(s) 276
BsrDI GCAATG 1 cut(s) 260
BsrI ACTGG 2 cut(s) 145, 366
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 2 cut(s) 90, 94
BssSI CACGAG 1 cut(s) 327
BssT1I CCWWGG 1 cut(s) 27
Bst2BI CACGAG 1 cut(s) 327
Bst2UI CCWGG 1 cut(s) 510
Bst4CI ACNGT 1 cut(s) 532
Bst6I CTCTTC 3 cut(s) 270, 276, 300
BstDEI CTNAG 2 cut(s) 266, 494
BstDSI CCRYGG 1 cut(s) 27
BstF5I GGATG 1 cut(s) 171
BstH2I RGCGCY 1 cut(s) 494
BstHHI GCGC 1 cut(s) 493
BstKTI GATC 2 cut(s) 93, 97
BstMAI GTCTC 1 cut(s) 573
BstMBI GATC 2 cut(s) 90, 94
BstMCI CGRYCG 1 cut(s) 97
BstMWI GCNNNNNNNGC 2 cut(s) 441, 589
BstNI CCWGG 1 cut(s) 510
BstSCI CCNGG 1 cut(s) 508
BstSFI CTRYAG 1 cut(s) 584
BstV1I GCAGC 4 cut(s) 176, 431, 453, 570
Bsu15I ATCGAT 1 cut(s) 93
BsuTUI ATCGAT 1 cut(s) 93
BtgI CCRYGG 1 cut(s) 27
BtsCI GGATG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 528
CaiI CAGNNNCTG 1 cut(s) 562
CfoI GCGC 1 cut(s) 493
Cfr13I GGNCC 1 cut(s) 143
ClaI ATCGAT 1 cut(s) 93
CsiI ACCWGGT 1 cut(s) 508
Csp6I GTAC 3 cut(s) 315, 506, 559
CviAII CATG 1 cut(s) 28
CviQI GTAC 3 cut(s) 315, 506, 559
DdeI CTNAG 2 cut(s) 266, 494
DpnI GATC 2 cut(s) 92, 96
DpnII GATC 2 cut(s) 90, 94
DraI TTTAAA 1 cut(s) 18
Eam1104I CTCTTC 3 cut(s) 270, 276, 300
EarI CTCTTC 3 cut(s) 270, 276, 300
Ecl136II GAGCTC 1 cut(s) 345
Eco130I CCWWGG 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 347
Eco47I GGWCC 1 cut(s) 143
Eco53kI GAGCTC 1 cut(s) 345
Eco57I CTGAAG 2 cut(s) 254, 584
EcoICRI GAGCTC 1 cut(s) 345
EcoRI GAATTC 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 508
EcoT14I CCWWGG 1 cut(s) 27
EcoT22I ATGCAT 1 cut(s) 262
EcoT38I GRGCYC 1 cut(s) 347
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 1 cut(s) 31
FaiI YATR 5 cut(s) 29, 110, 297, 339, 372
FatI CATG 1 cut(s) 27
FblI GTMKAC 1 cut(s) 227
Fnu4HI GCNGC 4 cut(s) 165, 442, 445, 584
FokI GGATG 1 cut(s) 158
FriOI GRGCYC 1 cut(s) 347
Fsp4HI GCNGC 4 cut(s) 165, 442, 445, 584
FspBI CTAG 2 cut(s) 50, 542
GlaI GCGC 1 cut(s) 492
GluI GCNGC 4 cut(s) 165, 442, 445, 584
GsuI CTGGAG 1 cut(s) 349
HaeII RGCGCY 1 cut(s) 494
HhaI GCGC 1 cut(s) 493
Hin1II CATG 1 cut(s) 31
Hin6I GCGC 1 cut(s) 491
HinP1I GCGC 1 cut(s) 491
HindIII AAGCTT 1 cut(s) 590
HinfI GANTC 2 cut(s) 242, 356
HphI GGTGA 1 cut(s) 496
Hpy166II GTNNAC 1 cut(s) 228
Hpy188I TCNGA 4 cut(s) 105, 234, 247, 355
Hpy188III TCNNGA 2 cut(s) 119, 542
Hpy8I GTNNAC 1 cut(s) 228
HpyAV CCTTC 3 cut(s) 229, 382, 386
HpyCH4III ACNGT 1 cut(s) 532
HpyCH4V TGCA 4 cut(s) 164, 260, 447, 586
HpyF10VI GCNNNNNNNGC 2 cut(s) 441, 589
HpyF3I CTNAG 2 cut(s) 266, 494
Hsp92II CATG 1 cut(s) 31
HspAI GCGC 1 cut(s) 491
Kzo9I GATC 2 cut(s) 90, 94
LguI GCTCTTC 1 cut(s) 276
LmnI GCTCC 2 cut(s) 342, 368
Lsp1109I GCAGC 4 cut(s) 176, 431, 453, 570
LweI GCATC 3 cut(s) 62, 230, 247
MabI ACCWGGT 1 cut(s) 508
MaeI CTAG 2 cut(s) 50, 542
MalI GATC 2 cut(s) 92, 96
MboI GATC 2 cut(s) 90, 94
MboII GAAGA 9 cut(s) 69, 75, 287, 293, 302, 317, 396, 487, 490
MhlI GDGCHC 1 cut(s) 347
MluCI AATT 7 cut(s) 37, 66, 99, 123, 135, 334, 604
MlyI GAGTC 1 cut(s) 236
MnlI CCTC 9 cut(s) 57, 167, 190, 232, 271, 295, 301, 480, 491
Mph1103I ATGCAT 1 cut(s) 262
MroXI GAANNNNTTC 2 cut(s) 67, 552
MseI TTAA 2 cut(s) 17, 153
MspA1I CMGCKG 1 cut(s) 444
MspR9I CCNGG 1 cut(s) 510
MvaI CCWGG 1 cut(s) 510
MwoI GCNNNNNNNGC 2 cut(s) 441, 589
NcoI CCATGG 1 cut(s) 27
NdeII GATC 2 cut(s) 90, 94
NlaIII CATG 1 cut(s) 31
NsiI ATGCAT 1 cut(s) 262
PciSI GCTCTTC 1 cut(s) 276
PdmI GAANNNNTTC 2 cut(s) 67, 552
PfeI GAWTC 1 cut(s) 356
PkrI GCNGC 4 cut(s) 166, 443, 446, 585
Ple19I CGATCG 1 cut(s) 97
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
Psp124BI GAGCTC 1 cut(s) 347
Psp6I CCWGG 1 cut(s) 508
PspGI CCWGG 1 cut(s) 508
PspPI GGNCC 1 cut(s) 143
PstI CTGCAG 1 cut(s) 588
PstNI CAGNNNCTG 1 cut(s) 562
PvuI CGATCG 1 cut(s) 97
PvuII CAGCTG 1 cut(s) 444
RsaI GTAC 3 cut(s) 316, 507, 560
RsaNI GTAC 3 cut(s) 315, 506, 559
SacI GAGCTC 1 cut(s) 347
SapI GCTCTTC 1 cut(s) 276
SaqAI TTAA 2 cut(s) 17, 153
SatI GCNGC 4 cut(s) 165, 442, 445, 584
Sau3AI GATC 2 cut(s) 90, 94
Sau96I GGNCC 1 cut(s) 143
SchI GAGTC 1 cut(s) 236
ScrFI CCNGG 1 cut(s) 510
SduI GDGCHC 1 cut(s) 347
SexAI ACCWGGT 1 cut(s) 508
SfaNI GCATC 3 cut(s) 62, 230, 247
SfcI CTRYAG 1 cut(s) 584
SinI GGWCC 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 572
SmoI CTYRAG 1 cut(s) 572
Sse9I AATT 7 cut(s) 37, 66, 99, 123, 135, 334, 604
SspI AATATT 1 cut(s) 205
SspMI CTAG 2 cut(s) 50, 542
SstI GAGCTC 1 cut(s) 347
StyD4I CCNGG 1 cut(s) 508
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 1 cut(s) 532
TaqI TCGA 3 cut(s) 80, 93, 97
TasI AATT 7 cut(s) 37, 66, 99, 123, 135, 334, 604
TatI WGTACW 1 cut(s) 314
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 2 cut(s) 17, 153
Tru9I TTAA 2 cut(s) 17, 153
TscAI CASTG 1 cut(s) 535
TseI GCWGC 4 cut(s) 164, 441, 444, 583
TspDTI ATGAA 4 cut(s) 60, 488, 534, 539
TspRI CASTG 1 cut(s) 535
VpaK11BI GGWCC 1 cut(s) 143
XapI RAATTY 5 cut(s) 37, 66, 99, 123, 604
XbaI TCTAGA 1 cut(s) 541
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
XmiI GTMKAC 1 cut(s) 227
XmnI GAANNNNTTC 2 cut(s) 67, 552
XspI CTAG 2 cut(s) 50, 542
Zsp2I ATGCAT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.