pycom10g23560

Protein trichome birefringence-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
25664718 .. 25668768
4051 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1086 bp
ATGGGTTTCAAGCTCCAAGCTCCGCTGTGCCTTGTAGCTCTTCAAGTTTTGGTCTTCTTCTCAGAAGAAGCAGAGTCAGCAGGGCACAGCCATGGCAGCAGCTTGAGAGTCCACAGGAAGCAAGTGAGCCGCTGCAATTTGTTCGAAGGCAATTGGGTTTTTGATGCTTCTTACCCCCTTTATGATTCTGCCACCTGTCCCTTCATCGATCCCGAGTTTGATTGCATCAAGTATGGCAGACCTGATATGCAGTTCCTCAAGTATGCCTGGAAGCCCGCCTCCTGTGACTTGCCCAGGTTTGATGGGGTGGATTTTCTGAGGAGGTGGAGCGGAAAGAAGATAATGTTTGTGGGCGACTCACTGAGTCTGAACATGTGGGAATCGTTGTCTTGTATGATACATGCGTCGGTGCCAAATGCCAAGACCAGCTTCAGAAAAGGCTATTCTGTGAACTTTGAGGACTATGGAGTGACTTTGTTTATGTTCCGGACACCGTACCTTGTAGATATAGTCAGAGAAGAAGTTGGCCGTGTGCTAAACCTAAACTCCATCAACGCCGGAGATGCATGGAAAGGGATGGACGTCCTGATCTTCAACTCTTGGCATTGGTGGACCCACACCGGCAATTCTCAACCATTTGATTATTTTCGGGATGGGACAGAACTGTACAAAGATATGGATCGTTTGACAGCATTTTATAAGGGGCTTTCCACATGGGCTAAATGGGTTGACTCAAATGTTGATACTTCAAGAACCAAAGTCTTCTTTCAGGGCATTTCTCCGACACATTACCAGGGACAAGAATGGAATTCGCCGAAGAAGAATTGCTTAGGAGAACTTGAACCGCTATCGGGATCAACCTACCCAGCAGGGGCACCTCCATCCACTGCTGTTGTCTATAAGGTGCTGAGCACGATTAAGAGCCCGGTTTACTTGCTCGACATTACAATGCTCTCGCAGTTGAGGAAGGATGCTCATCCCTCGACTTACAGCGGCGATCATTCGGGCAACGACTGCAGCCATTGGTGCTTGCCAGGGTTGCCTGATACCTGGAACCAACTCCTATACGCAGCTCTCATCATGTGA

Protein Analysis

362

Amino Acids

41.05

Weight (kDa)

6.36

Isoelectric Point (pI)

36.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 44 - 96 5.7e-23 PMR5 N terminal Domain
PC-Esterase PF13839 97 - 357 5.7e-91 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 699
AatII GACGTC 1 cut(s) 585
AccB1I GGYRCC 2 cut(s) 409, 874
AccBSI CCGCTC 1 cut(s) 330
AccIII TCCGGA 1 cut(s) 486
AciI CCGC 6 cut(s) 23, 130, 276, 330, 845, 993
AclWI GGATC 3 cut(s) 203, 687, 862
AcoI YGGCCR 1 cut(s) 526
AcsI RAATTY 1 cut(s) 808
AcuI CTGAAG 1 cut(s) 415
AcyI GRCGYC 1 cut(s) 582
AfaI GTAC 2 cut(s) 497, 668
AfiI CCNNNNNNNGG 2 cut(s) 851, 871
AflIII ACRYGT 1 cut(s) 372
AgsI TTSAA 5 cut(s) 10, 44, 595, 750, 842
AjnI CCWGG 5 cut(s) 266, 293, 792, 1033, 1049
AjuI GAANNNNNNNTTGG 2 cut(s) 413, 445
AluBI AGCT 6 cut(s) 13, 20, 38, 102, 429, 1073
AluI AGCT 6 cut(s) 13, 20, 38, 102, 429, 1073
Alw21I GWGCWC 1 cut(s) 914
AlwI GGATC 3 cut(s) 203, 687, 862
Ama87I CYCGRG 1 cut(s) 212
Aor13HI TCCGGA 1 cut(s) 486
AoxI GGCC 1 cut(s) 526
ApeKI GCWGC 5 cut(s) 96, 99, 132, 1017, 1070
ApoI RAATTY 1 cut(s) 808
AspS9I GGNCC 1 cut(s) 612
AsuC2I CCSGG 1 cut(s) 926
AsuII TTCGAA 1 cut(s) 144
AvaI CYCGRG 1 cut(s) 212
AvaII GGWCC 1 cut(s) 612
BaeGI GKGCMC 2 cut(s) 87, 877
BaeI ACNNNNGTAYC 2 cut(s) 389, 422
BanI GGYRCC 2 cut(s) 409, 874
BanII GRGCYC 1 cut(s) 926
BbsI GAAGAC 2 cut(s) 46, 754
Bbv12I GWGCWC 1 cut(s) 914
BbvI GCAGC 5 cut(s) 108, 111, 119, 1029, 1082
BccI CCATC 5 cut(s) 296, 557, 571, 647, 889
BceAI ACGGC 1 cut(s) 513
BcgI CGANNNNNNTGC 2 cut(s) 124, 158
BciT130I CCWGG 5 cut(s) 268, 295, 794, 1035, 1051
BcnI CCSGG 1 cut(s) 926
BfmI CTRYAG 1 cut(s) 1015
BisI GCNGC 7 cut(s) 97, 100, 130, 133, 994, 1018, 1071
BlpI GCTNAGC 1 cut(s) 908
BlsI GCNGC 7 cut(s) 98, 101, 131, 134, 995, 1019, 1072
Bme1390I CCNGG 6 cut(s) 268, 295, 794, 926, 1035, 1051
Bme18I GGWCC 1 cut(s) 612
BmeT110I CYCGRG 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 612
BmiI GGNNCC 4 cut(s) 411, 614, 876, 1055
BmrFI CCNGG 6 cut(s) 268, 295, 794, 926, 1035, 1051
BmsI GCATC 4 cut(s) 154, 234, 553, 961
BpiI GAAGAC 2 cut(s) 46, 754
Bpu10I CCTNAGC 1 cut(s) 829
Bpu1102I GCTNAGC 1 cut(s) 908
Bpu14I TTCGAA 1 cut(s) 144
BpuEI CTTGAG 2 cut(s) 124, 242
BpuMI CCSGG 1 cut(s) 926
Bsa29I ATCGAT 1 cut(s) 207
BsaBI GATNNNNATC 2 cut(s) 678, 975
BsaHI GRCGYC 1 cut(s) 582
BsaJI CCNNGG 4 cut(s) 91, 293, 793, 1034
BsaWI WCCGGW 1 cut(s) 486
BsaXI ACNNNNNCTCC 2 cut(s) 530, 560
Bsc4I CCNNNNNNNGG 2 cut(s) 851, 871
Bse118I RCCGGY 1 cut(s) 620
Bse8I GATNNNNATC 2 cut(s) 678, 975
BseAI TCCGGA 1 cut(s) 486
BseBI CCWGG 5 cut(s) 268, 295, 794, 1035, 1051
BseCI ATCGAT 1 cut(s) 207
BseDI CCNNGG 4 cut(s) 91, 293, 793, 1034
BseGI GGATG 5 cut(s) 582, 658, 881, 976, 976
BseJI GATNNNNATC 2 cut(s) 678, 975
BseLI CCNNNNNNNGG 2 cut(s) 851, 871
BseMII CTCAG 4 cut(s) 75, 308, 353, 899
BseRI GAGGAG 1 cut(s) 334
BseSI GKGCMC 2 cut(s) 87, 877
BseXI GCAGC 5 cut(s) 108, 111, 119, 1029, 1082
BseYI CCCAGC 1 cut(s) 865
BshFI GGCC 1 cut(s) 528
BshNI GGYRCC 2 cut(s) 409, 874
BshVI ATCGAT 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 914
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 4 cut(s) 487, 558, 621, 926
BslFI GGGAC 3 cut(s) 183, 670, 810
BslI CCNNNNNNNGG 2 cut(s) 851, 871
BsmFI GGGAC 3 cut(s) 183, 670, 810
BsnI GGCC 1 cut(s) 528
BsoBI CYCGRG 1 cut(s) 212
Bsp119I TTCGAA 1 cut(s) 144
Bsp1286I GDGCHC 4 cut(s) 87, 877, 914, 926
Bsp13I TCCGGA 1 cut(s) 486
Bsp1407I TGTACA 1 cut(s) 666
Bsp143I GATC 5 cut(s) 208, 588, 679, 854, 997
Bsp1720I GCTNAGC 1 cut(s) 908
Bsp19I CCATGG 1 cut(s) 91
BspACI CCGC 6 cut(s) 23, 130, 276, 330, 845, 993
BspANI GGCC 1 cut(s) 528
BspCNI CTCAG 4 cut(s) 74, 309, 354, 900
BspDI ATCGAT 1 cut(s) 207
BspEI TCCGGA 1 cut(s) 486
BspLI GGNNCC 4 cut(s) 411, 614, 876, 1055
BspMAI CTGCAG 1 cut(s) 1019
BspPI GGATC 3 cut(s) 203, 687, 862
BspQI GCTCTTC 1 cut(s) 45
BspT104I TTCGAA 1 cut(s) 144
BspT107I GGYRCC 2 cut(s) 409, 874
BsrBI CCGCTC 1 cut(s) 330
BsrFI RCCGGY 1 cut(s) 620
BsrGI TGTACA 1 cut(s) 666
BssAI RCCGGY 1 cut(s) 620
BssECI CCNNGG 4 cut(s) 91, 293, 793, 1034
BssMI GATC 5 cut(s) 208, 588, 679, 854, 997
BssNI GRCGYC 1 cut(s) 582
BssT1I CCWWGG 1 cut(s) 91
Bst2UI CCWGG 5 cut(s) 268, 295, 794, 1035, 1051
Bst4CI ACNGT 2 cut(s) 495, 666
Bst6I CTCTTC 1 cut(s) 45
BstACI GRCGYC 1 cut(s) 582
BstAPI GCANNNNNTGC 1 cut(s) 1014
BstAUI TGTACA 1 cut(s) 666
BstBI TTCGAA 1 cut(s) 144
BstC8I GCNNGC 2 cut(s) 276, 1031
BstDEI CTNAG 5 cut(s) 61, 317, 362, 829, 908
BstDSI CCRYGG 1 cut(s) 91
BstF5I GGATG 5 cut(s) 582, 658, 881, 976, 976
BstKTI GATC 5 cut(s) 211, 591, 682, 857, 1000
BstMBI GATC 5 cut(s) 208, 588, 679, 854, 997
BstMWI GCNNNNNNNGC 6 cut(s) 77, 96, 563, 1014, 1026, 1039
BstNI CCWGG 5 cut(s) 268, 295, 794, 1035, 1051
BstNSI RCATGY 2 cut(s) 376, 404
BstSCI CCNGG 6 cut(s) 266, 293, 792, 924, 1033, 1049
BstSFI CTRYAG 1 cut(s) 1015
BstSLI GKGCMC 2 cut(s) 87, 877
BstV1I GCAGC 5 cut(s) 108, 111, 119, 1029, 1082
BstV2I GAAGAC 2 cut(s) 46, 754
Bsu15I ATCGAT 1 cut(s) 207
BsuRI GGCC 1 cut(s) 528
BsuTUI ATCGAT 1 cut(s) 207
BtgI CCRYGG 1 cut(s) 91
BtsCI GGATG 5 cut(s) 582, 658, 881, 976, 976
BtsI GCAGTG 1 cut(s) 885
BtsIMutI CAGTG 2 cut(s) 359, 885
Cac8I GCNNGC 2 cut(s) 276, 1031
Cfr10I RCCGGY 1 cut(s) 620
Cfr13I GGNCC 1 cut(s) 612
ClaI ATCGAT 1 cut(s) 207
CseI GACGC 1 cut(s) 393
Csp6I GTAC 2 cut(s) 496, 667
CspCI CAANNNNNGTGG 2 cut(s) 874, 909
CviAII CATG 6 cut(s) 92, 373, 401, 567, 714, 1081
CviQI GTAC 2 cut(s) 496, 667
DdeI CTNAG 5 cut(s) 61, 317, 362, 829, 908
DpnI GATC 5 cut(s) 210, 590, 681, 856, 999
DpnII GATC 5 cut(s) 208, 588, 679, 854, 997
EaeI YGGCCR 1 cut(s) 526
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 926
Eco47I GGWCC 1 cut(s) 612
Eco57I CTGAAG 1 cut(s) 415
Eco88I CYCGRG 1 cut(s) 212
EcoRI GAATTC 1 cut(s) 808
EcoRII CCWGG 5 cut(s) 266, 293, 792, 1033, 1049
EcoT14I CCWWGG 1 cut(s) 91
EcoT22I ATGCAT 1 cut(s) 568
EcoT38I GRGCYC 1 cut(s) 926
ErhI CCWWGG 1 cut(s) 91
FaeI CATG 6 cut(s) 95, 376, 404, 570, 717, 1084
FalI AAGNNNNNCTT 4 cut(s) 413, 445, 812, 844
FaqI GGGAC 3 cut(s) 183, 670, 810
FatI CATG 6 cut(s) 91, 372, 400, 566, 713, 1080
FauI CCCGC 1 cut(s) 283
Fnu4HI GCNGC 7 cut(s) 97, 100, 130, 133, 994, 1018, 1071
FokI GGATG 5 cut(s) 589, 665, 868, 963, 983
FriOI GRGCYC 1 cut(s) 926
Fsp4HI GCNGC 7 cut(s) 97, 100, 130, 133, 994, 1018, 1071
GluI GCNGC 7 cut(s) 97, 100, 130, 133, 994, 1018, 1071
GsaI CCCAGC 1 cut(s) 869
HaeIII GGCC 1 cut(s) 528
HapII CCGG 4 cut(s) 487, 558, 621, 926
HgaI GACGC 1 cut(s) 393
Hin1I GRCGYC 1 cut(s) 582
Hin1II CATG 6 cut(s) 95, 376, 404, 570, 717, 1084
HincII GTYRAC 1 cut(s) 730
HindII GTYRAC 1 cut(s) 730
HinfI GANTC 7 cut(s) 74, 108, 185, 356, 364, 380, 731
HpaII CCGG 4 cut(s) 487, 558, 621, 926
Hpy166II GTNNAC 5 cut(s) 112, 451, 612, 730, 931
Hpy188I TCNGA 6 cut(s) 64, 318, 369, 434, 515, 783
Hpy188III TCNNGA 6 cut(s) 212, 487, 586, 650, 750, 852
Hpy8I GTNNAC 5 cut(s) 112, 451, 612, 730, 931
Hpy99I CGWCG 1 cut(s) 409
HpyAV CCTTC 3 cut(s) 140, 211, 961
HpyCH4III ACNGT 2 cut(s) 495, 666
HpyCH4IV ACGT 1 cut(s) 582
HpyCH4V TGCA 5 cut(s) 135, 225, 250, 566, 1017
HpyF10VI GCNNNNNNNGC 6 cut(s) 77, 96, 563, 1014, 1026, 1039
HpyF3I CTNAG 5 cut(s) 61, 317, 362, 829, 908
HpySE526I ACGT 1 cut(s) 582
Hsp92I GRCGYC 1 cut(s) 582
Hsp92II CATG 6 cut(s) 95, 376, 404, 570, 717, 1084
Kpn2I TCCGGA 1 cut(s) 486
Kzo9I GATC 5 cut(s) 208, 588, 679, 854, 997
LguI GCTCTTC 1 cut(s) 45
LmnI GCTCC 3 cut(s) 18, 25, 327
Lsp1109I GCAGC 5 cut(s) 108, 111, 119, 1029, 1082
LweI GCATC 4 cut(s) 154, 234, 553, 961
MaeII ACGT 1 cut(s) 582
MaeIII GTNAC 2 cut(s) 284, 469
MalI GATC 5 cut(s) 210, 590, 681, 856, 999
MbiI CCGCTC 1 cut(s) 330
MboI GATC 5 cut(s) 208, 588, 679, 854, 997
MfeI CAATTG 1 cut(s) 151
MhlI GDGCHC 4 cut(s) 87, 877, 914, 926
MluCI AATT 5 cut(s) 136, 151, 625, 808, 823
MlyI GAGTC 5 cut(s) 83, 117, 350, 373, 725
MmeI TCCRAC 1 cut(s) 806
MnlI CCTC 8 cut(s) 266, 289, 312, 315, 451, 888, 957, 991
Mph1103I ATGCAT 1 cut(s) 568
MroI TCCGGA 1 cut(s) 486
MseI TTAA 1 cut(s) 918
MslI CAYNNNNRTG 2 cut(s) 90, 947
MspA1I CMGCKG 3 cut(s) 25, 132, 993
MspI CCGG 4 cut(s) 487, 558, 621, 926
MspR9I CCNGG 6 cut(s) 268, 295, 794, 926, 1035, 1051
MunI CAATTG 1 cut(s) 151
MvaI CCWGG 5 cut(s) 268, 295, 794, 1035, 1051
MwoI GCNNNNNNNGC 6 cut(s) 77, 96, 563, 1014, 1026, 1039
NciI CCSGG 1 cut(s) 926
NcoI CCATGG 1 cut(s) 91
NdeII GATC 5 cut(s) 208, 588, 679, 854, 997
NlaIII CATG 6 cut(s) 95, 376, 404, 570, 717, 1084
NlaIV GGNNCC 4 cut(s) 411, 614, 876, 1055
NmuCI GTSAC 2 cut(s) 284, 469
NsiI ATGCAT 1 cut(s) 568
NspI RCATGY 2 cut(s) 376, 404
NspV TTCGAA 1 cut(s) 144
PciI ACATGT 1 cut(s) 372
PciSI GCTCTTC 1 cut(s) 45
PfeI GAWTC 2 cut(s) 185, 380
PkrI GCNGC 7 cut(s) 98, 101, 131, 134, 995, 1019, 1072
PleI GAGTC 5 cut(s) 82, 116, 350, 372, 725
PpsI GAGTC 5 cut(s) 82, 116, 350, 372, 725
PscI ACATGT 1 cut(s) 372
PsiI TTATAA 1 cut(s) 699
Psp6I CCWGG 5 cut(s) 266, 293, 792, 1033, 1049
PspFI CCCAGC 1 cut(s) 865
PspGI CCWGG 5 cut(s) 266, 293, 792, 1033, 1049
PspN4I GGNNCC 4 cut(s) 411, 614, 876, 1055
PspPI GGNCC 1 cut(s) 612
PstI CTGCAG 1 cut(s) 1019
RsaI GTAC 2 cut(s) 497, 668
RsaNI GTAC 2 cut(s) 496, 667
RseI CAYNNNNRTG 2 cut(s) 90, 947
SapI GCTCTTC 1 cut(s) 45
SaqAI TTAA 1 cut(s) 918
SatI GCNGC 7 cut(s) 97, 100, 130, 133, 994, 1018, 1071
Sau3AI GATC 5 cut(s) 208, 588, 679, 854, 997
Sau96I GGNCC 1 cut(s) 612
SchI GAGTC 5 cut(s) 83, 117, 350, 373, 725
ScrFI CCNGG 6 cut(s) 268, 295, 794, 926, 1035, 1051
SduI GDGCHC 4 cut(s) 87, 877, 914, 926
SfaNI GCATC 4 cut(s) 154, 234, 553, 961
SfcI CTRYAG 1 cut(s) 1015
SfuI TTCGAA 1 cut(s) 144
SinI GGWCC 1 cut(s) 612
SmiMI CAYNNNNRTG 2 cut(s) 90, 947
SmlI CTYRAG 2 cut(s) 103, 257
SmoI CTYRAG 2 cut(s) 103, 257
Sse9I AATT 5 cut(s) 136, 151, 625, 808, 823
SsiI CCGC 6 cut(s) 23, 130, 276, 330, 845, 993
StyD4I CCNGG 6 cut(s) 266, 293, 792, 924, 1033, 1049
StyI CCWWGG 1 cut(s) 91
TaaI ACNGT 2 cut(s) 495, 666
TaiI ACGT 1 cut(s) 585
TaqI TCGA 4 cut(s) 144, 207, 939, 983
TasI AATT 5 cut(s) 136, 151, 625, 808, 823
TatI WGTACW 1 cut(s) 666
TauI GCSGC 2 cut(s) 132, 996
TfiI GAWTC 2 cut(s) 185, 380
Tru1I TTAA 1 cut(s) 918
Tru9I TTAA 1 cut(s) 918
TscAI CASTG 2 cut(s) 366, 892
TseFI GTSAC 2 cut(s) 284, 469
TseI GCWGC 5 cut(s) 96, 99, 132, 1017, 1070
Tsp45I GTSAC 2 cut(s) 284, 469
TspDTI ATGAA 1 cut(s) 193
TspRI CASTG 2 cut(s) 366, 892
VpaK11BI GGWCC 1 cut(s) 612
XapI RAATTY 1 cut(s) 808
XceI RCATGY 2 cut(s) 376, 404
ZraI GACGTC 1 cut(s) 583
Zsp2I ATGCAT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.