pycom10g25260
NAC Family

NAC transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0010797
Physical Location & Seq
Forward (+)
26941289 .. 26942723
1435 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1122 bp
ATGGAGAGCACAAATTCATCATCGGTTTTACAGCACCCGCAGCTCCCGCCGGGGTTCCGGTTTCACCCGACGGACGAAGAACTGGTGGTCCATTACCTCAAGAAAAAGGCCGCCTCCATCCCGCTTCCGGTCGCCATCATCGCGGAGGTCGACTTGTACAAGTTTGATCCATGGGAACTGCCAAGTAAGGCGACGTTTGGGGAGCAAGAGTGGTATTTTTTCAGCCCAAGGGACCGGAAGTATCCGAATGGGGCGCGGCCAAACAGGGCAGCAACTTCAGGGTATTGGAAGGCGACTGGGACGGATAAGCCTGTTCTATCATCAGTCGGAAACCACAAAGTCGGTGTGAAAAAAGCTCTTGTTTTCTATGGAGGGAAGCCCCCAAAAGGGACTAAAACCAATTGGATTATGCACGAGTATCGGCTTGTCAACAACACCACCACCACCATCAACATGAGTTGTAGTACTACTAAGCCTCCTGATCCAGCTAACAAAAAACCATCCCTAAGGCTTGATGATTGGGTTTTGTGTCGGATTTATAAGAAAAACAAAGGGCCTGTGATGTCTTTAGATGGTGATCATTTTCTTCACAAGGCCGAGGACTCTAATAGTTCTATGGAAGATATGTTTCTCCACCCGTCAATACTGCCAACTCAAAAAACACCACCGCTGCCGCCGCTGCCATCATCAAAGCTGCCAACTACAGATTACACCGCGTTGCTAGAAAGCGATAATCACGAGAGCTATCTCGAGGGCATACTATCGTCAAGCGATCATCAACCAGGCTCTCACTCTCATCATCATCATCATGATCATGATCATGATCAGTTTGGCGCTATATCAACTTCCATCTCAAAAAGCAGCCTACCCTTGAAACGTCATCTTCCTTCGCCGTTTTGGAACGACGTGGGATCGATAGGGACTGCTGCTGCTACAACTACTTCATCGAGAAAAAAGTTTCATGCTGATCTCATCAATGAAAACAACTCCTTTGTTTCTATGCTGAATCAGACGCCACAGGGTACGGCACCGTTTCACGCTAATGCTGCACTTCTTGAGTTGCTAGGAGATGGGGTTCTGCGCCCACAGTTTCAACTCCCAAGCATGAACTGGAATTCCTAG

Protein Analysis

374

Amino Acids

41.51

Weight (kDa)

8.33

Isoelectric Point (pI)

43.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 16 - 142 3.5e-51 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010797)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61110
fragaria_vesca FvH4_3g04630
malus_domestica MD05G1321800.v1.1 MD05G1321900.v1.1 MD10G1299900.v1.1
prunus_persica Prupe.4G040900_v2.0.a1 Prupe.4G040900_v2.0.a1
pyrus_communis pycom05g29620 pycom10g25260
rosa_chinensis RchiOBHm_Chr5g0007561
rosa_laevigata RLG00000031468
rosa_multiflora Rmu_ssc0000182.1_g000018
rosa_roxburghii Rroxscaffold_1G00068840
rosa_rugosa Rorug04G0428600 Rorug04G0428700
rosa_samantha Rh5AG056300 Rh5BG053800 Rh5CG063600 Rh5DG052800
rosa_wichuraiana Rw5G005390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 540
AccB1I GGYRCC 1 cut(s) 1027
AccI GTMKAC 1 cut(s) 150
AccII CGCG 3 cut(s) 143, 256, 716
AclWI GGATC 3 cut(s) 161, 476, 919
AcoI YGGCCR 1 cut(s) 257
AcsI RAATTY 2 cut(s) 13, 1114
AcuI CTGAAG 1 cut(s) 261
AcyI GRCGYC 1 cut(s) 1013
AfaI GTAC 3 cut(s) 158, 466, 1024
AfiI CCNNNNNNNGG 3 cut(s) 127, 386, 387
AgsI TTSAA 2 cut(s) 874, 1094
AjiI CACGTC 1 cut(s) 907
AjnI CCWGG 1 cut(s) 781
AloI GAACNNNNNNTCC 5 cut(s) 72, 104, 1059, 1091, 1100
AluBI AGCT 5 cut(s) 43, 356, 488, 694, 744
AluI AGCT 5 cut(s) 43, 356, 488, 694, 744
Alw21I GWGCWC 1 cut(s) 11
AlwI GGATC 3 cut(s) 161, 476, 919
Ama87I CYCGRG 1 cut(s) 749
AoxI GGCC 4 cut(s) 108, 257, 554, 594
ApeKI GCWGC 9 cut(s) 40, 269, 670, 679, 694, 861, 926, 929, 1046
ApoI RAATTY 2 cut(s) 13, 1114
AspLEI GCGC 3 cut(s) 256, 836, 1083
AspS9I GGNCC 3 cut(s) 88, 232, 554
AsuC2I CCSGG 1 cut(s) 51
AsuHPI GGTGA 2 cut(s) 56, 587
AvaI CYCGRG 1 cut(s) 749
AvaII GGWCC 2 cut(s) 88, 232
AxyI CCTNAGG 1 cut(s) 506
BanI GGYRCC 1 cut(s) 1027
BauI CACGAG 2 cut(s) 413, 737
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 9 cut(s) 52, 281, 657, 666, 681, 873, 913, 916, 1033
BccI CCATC 8 cut(s) 125, 143, 455, 508, 566, 691, 857, 1064
BceAI ACGGC 2 cut(s) 877, 1041
BcgI CGANNNNNNTGC 2 cut(s) 401, 435
BciT130I CCWGG 1 cut(s) 783
BciVI GTATCC 1 cut(s) 252
BclI TGATCA 4 cut(s) 577, 811, 817, 823
BcnI CCSGG 1 cut(s) 51
BfaI CTAG 3 cut(s) 722, 1064, 1120
BfmI CTRYAG 1 cut(s) 702
BfoI RGCGCY 1 cut(s) 837
BfuI GTATCC 1 cut(s) 252
BmcAI AGTACT 1 cut(s) 466
Bme1390I CCNGG 2 cut(s) 51, 783
Bme18I GGWCC 2 cut(s) 88, 232
BmeT110I CYCGRG 1 cut(s) 749
BmgBI CACGTC 1 cut(s) 907
BmgT120I GGNCC 3 cut(s) 88, 232, 554
BmiI GGNNCC 3 cut(s) 56, 233, 1029
BmrFI CCNGG 2 cut(s) 51, 783
BmrI ACTGGG 1 cut(s) 306
BmuI ACTGGG 1 cut(s) 306
BpuEI CTTGAG 2 cut(s) 83, 1076
BpuMI CCSGG 1 cut(s) 51
Bsa29I ATCGAT 1 cut(s) 914
BsaBI GATNNNNATC 3 cut(s) 576, 816, 822
BsaHI GRCGYC 1 cut(s) 1013
BsaJI CCNNGG 4 cut(s) 50, 170, 227, 597
BsaWI WCCGGW 3 cut(s) 57, 127, 234
BsaXI ACNNNNNCTCC 6 cut(s) 194, 224, 460, 490, 1059, 1089
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 386, 387
Bse1I ACTGG 3 cut(s) 87, 301, 1115
Bse21I CCTNAGG 1 cut(s) 506
Bse8I GATNNNNATC 3 cut(s) 576, 816, 822
BseBI CCWGG 1 cut(s) 783
BseCI ATCGAT 1 cut(s) 914
BseDI CCNNGG 4 cut(s) 50, 170, 227, 597
BseGI GGATG 2 cut(s) 117, 500
BseJI GATNNNNATC 3 cut(s) 576, 816, 822
BseLI CCNNNNNNNGG 3 cut(s) 127, 386, 387
BseNI ACTGG 3 cut(s) 87, 301, 1115
BseXI GCAGC 9 cut(s) 52, 281, 657, 666, 681, 873, 913, 916, 1033
BsgI GTGCAG 1 cut(s) 1032
Bsh1236I CGCG 3 cut(s) 143, 256, 716
Bsh1285I CGRYCG 1 cut(s) 132
BshFI GGCC 4 cut(s) 110, 259, 556, 596
BshNI GGYRCC 1 cut(s) 1027
BshVI ATCGAT 1 cut(s) 914
BsiEI CGRYCG 1 cut(s) 132
BsiHKAI GWGCWC 1 cut(s) 11
BsiHKCI CYCGRG 1 cut(s) 749
BsiSI CCGG 4 cut(s) 50, 58, 128, 235
BslFI GGGAC 4 cut(s) 245, 313, 403, 934
BslI CCNNNNNNNGG 3 cut(s) 127, 386, 387
BsmFI GGGAC 4 cut(s) 245, 313, 403, 934
BsnI GGCC 4 cut(s) 110, 259, 556, 596
BsoBI CYCGRG 1 cut(s) 749
Bsp1286I GDGCHC 1 cut(s) 11
Bsp1407I TGTACA 1 cut(s) 156
Bsp143I GATC 9 cut(s) 166, 481, 577, 772, 811, 817, 823, 911, 967
Bsp19I CCATGG 1 cut(s) 170
BspANI GGCC 4 cut(s) 110, 259, 556, 596
BspDI ATCGAT 1 cut(s) 914
BspFNI CGCG 3 cut(s) 143, 256, 716
BspHI TCATGA 3 cut(s) 808, 814, 820
BspLI GGNNCC 3 cut(s) 56, 233, 1029
BspPI GGATC 3 cut(s) 161, 476, 919
BspT107I GGYRCC 1 cut(s) 1027
BsrGI TGTACA 1 cut(s) 156
BsrI ACTGG 3 cut(s) 87, 301, 1115
BssECI CCNNGG 4 cut(s) 50, 170, 227, 597
BssMI GATC 9 cut(s) 166, 481, 577, 772, 811, 817, 823, 911, 967
BssNI GRCGYC 1 cut(s) 1013
BssSI CACGAG 2 cut(s) 413, 737
BssT1I CCWWGG 2 cut(s) 170, 227
Bst2BI CACGAG 2 cut(s) 413, 737
Bst2UI CCWGG 1 cut(s) 783
Bst4CI ACNGT 2 cut(s) 1032, 1089
BstACI GRCGYC 1 cut(s) 1013
BstAUI TGTACA 1 cut(s) 156
BstDEI CTNAG 2 cut(s) 471, 506
BstDSI CCRYGG 1 cut(s) 170
BstF5I GGATG 2 cut(s) 117, 500
BstFNI CGCG 3 cut(s) 143, 256, 716
BstH2I RGCGCY 1 cut(s) 837
BstHHI GCGC 3 cut(s) 256, 836, 1083
BstKTI GATC 9 cut(s) 169, 484, 580, 775, 814, 820, 826, 914, 970
BstMBI GATC 9 cut(s) 166, 481, 577, 772, 811, 817, 823, 911, 967
BstMCI CGRYCG 1 cut(s) 132
BstMWI GCNNNNNNNGC 6 cut(s) 40, 46, 140, 676, 679, 1046
BstNI CCWGG 1 cut(s) 783
BstSCI CCNGG 2 cut(s) 49, 781
BstSFI CTRYAG 1 cut(s) 702
BstUI CGCG 3 cut(s) 143, 256, 716
BstV1I GCAGC 9 cut(s) 52, 281, 657, 666, 681, 873, 913, 916, 1033
Bsu15I ATCGAT 1 cut(s) 914
Bsu36I CCTNAGG 1 cut(s) 506
BsuI GTATCC 1 cut(s) 252
BsuRI GGCC 4 cut(s) 110, 259, 556, 596
BsuTUI ATCGAT 1 cut(s) 914
BtgI CCRYGG 1 cut(s) 170
BtgZI GCGATG 1 cut(s) 124
BtrI CACGTC 1 cut(s) 907
BtsCI GGATG 2 cut(s) 117, 500
CciI TCATGA 3 cut(s) 808, 814, 820
CfoI GCGC 3 cut(s) 256, 836, 1083
Cfr13I GGNCC 3 cut(s) 88, 232, 554
ClaI ATCGAT 1 cut(s) 914
CseI GACGC 1 cut(s) 1021
Csp6I GTAC 3 cut(s) 157, 465, 1023
CviAII CATG 7 cut(s) 171, 454, 809, 815, 821, 962, 1105
CviQI GTAC 3 cut(s) 157, 465, 1023
DdeI CTNAG 2 cut(s) 471, 506
DpnI GATC 9 cut(s) 168, 483, 579, 774, 813, 819, 825, 913, 969
DpnII GATC 9 cut(s) 166, 481, 577, 772, 811, 817, 823, 911, 967
EaeI YGGCCR 1 cut(s) 257
Eco130I CCWWGG 2 cut(s) 170, 227
Eco47I GGWCC 2 cut(s) 88, 232
Eco57I CTGAAG 1 cut(s) 261
Eco81I CCTNAGG 1 cut(s) 506
Eco88I CYCGRG 1 cut(s) 749
EcoO109I RGGNCCY 1 cut(s) 554
EcoRI GAATTC 1 cut(s) 1114
EcoRII CCWGG 1 cut(s) 781
EcoT14I CCWWGG 2 cut(s) 170, 227
ErhI CCWWGG 2 cut(s) 170, 227
FaeI CATG 7 cut(s) 174, 457, 812, 818, 824, 965, 1108
FaqI GGGAC 4 cut(s) 245, 313, 403, 934
FatI CATG 7 cut(s) 170, 453, 808, 814, 820, 961, 1104
FauI CCCGC 3 cut(s) 45, 54, 129
FbaI TGATCA 4 cut(s) 577, 811, 817, 823
FblI GTMKAC 1 cut(s) 150
FokI GGATG 2 cut(s) 104, 487
FspBI CTAG 3 cut(s) 722, 1064, 1120
GlaI GCGC 3 cut(s) 255, 835, 1082
HaeII RGCGCY 1 cut(s) 837
HaeIII GGCC 4 cut(s) 110, 259, 556, 596
HapII CCGG 4 cut(s) 50, 58, 128, 235
HgaI GACGC 1 cut(s) 1021
HhaI GCGC 3 cut(s) 256, 836, 1083
Hin1I GRCGYC 1 cut(s) 1013
Hin1II CATG 7 cut(s) 174, 457, 812, 818, 824, 965, 1108
Hin6I GCGC 3 cut(s) 254, 834, 1081
HinP1I GCGC 3 cut(s) 254, 834, 1081
HincII GTYRAC 2 cut(s) 151, 430
HindII GTYRAC 2 cut(s) 151, 430
HinfI GANTC 2 cut(s) 602, 1006
HpaII CCGG 4 cut(s) 50, 58, 128, 235
HphI GGTGA 2 cut(s) 56, 587
Hpy166II GTNNAC 2 cut(s) 151, 430
Hpy188I TCNGA 4 cut(s) 246, 329, 534, 1011
Hpy188III TCNNGA 9 cut(s) 100, 479, 737, 749, 809, 815, 821, 948, 1055
Hpy8I GTNNAC 2 cut(s) 151, 430
Hpy99I CGWCG 3 cut(s) 73, 196, 908
HpyAV CCTTC 2 cut(s) 283, 897
HpyCH4III ACNGT 2 cut(s) 1032, 1089
HpyCH4IV ACGT 3 cut(s) 194, 877, 906
HpyCH4V TGCA 2 cut(s) 412, 1049
HpyF10VI GCNNNNNNNGC 6 cut(s) 40, 46, 140, 676, 679, 1046
HpyF3I CTNAG 2 cut(s) 471, 506
HpySE526I ACGT 3 cut(s) 194, 877, 906
Hsp92I GRCGYC 1 cut(s) 1013
Hsp92II CATG 7 cut(s) 174, 457, 812, 818, 824, 965, 1108
HspAI GCGC 3 cut(s) 254, 834, 1081
Ksp22I TGATCA 4 cut(s) 577, 811, 817, 823
Kzo9I GATC 9 cut(s) 166, 481, 577, 772, 811, 817, 823, 911, 967
LmnI GCTCC 2 cut(s) 48, 202
Lsp1109I GCAGC 9 cut(s) 52, 281, 657, 666, 681, 873, 913, 916, 1033
MaeI CTAG 3 cut(s) 722, 1064, 1120
MaeII ACGT 3 cut(s) 194, 877, 906
MalI GATC 9 cut(s) 168, 483, 579, 774, 813, 819, 825, 913, 969
MboI GATC 9 cut(s) 166, 481, 577, 772, 811, 817, 823, 911, 967
MboII GAAGA 4 cut(s) 89, 578, 632, 875
MfeI CAATTG 1 cut(s) 400
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 3 cut(s) 13, 400, 1114
MlyI GAGTC 1 cut(s) 596
MmeI TCCRAC 2 cut(s) 307, 512
MnlI CCTC 7 cut(s) 107, 124, 139, 365, 486, 592, 745
MslI CAYNNNNRTG 5 cut(s) 452, 807, 813, 819, 1041
MspA1I CMGCKG 2 cut(s) 670, 679
MspI CCGG 4 cut(s) 50, 58, 128, 235
MspR9I CCNGG 2 cut(s) 51, 783
MunI CAATTG 1 cut(s) 400
MvaI CCWGG 1 cut(s) 783
MvnI CGCG 3 cut(s) 143, 256, 716
MwoI GCNNNNNNNGC 6 cut(s) 40, 46, 140, 676, 679, 1046
NciI CCSGG 1 cut(s) 51
NcoI CCATGG 1 cut(s) 170
NdeII GATC 9 cut(s) 166, 481, 577, 772, 811, 817, 823, 911, 967
NlaIII CATG 7 cut(s) 174, 457, 812, 818, 824, 965, 1108
NlaIV GGNNCC 3 cut(s) 56, 233, 1029
NmeAIII GCCGAG 1 cut(s) 622
PaeR7I CTCGAG 1 cut(s) 749
PagI TCATGA 3 cut(s) 808, 814, 820
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PfeI GAWTC 1 cut(s) 1006
PleI GAGTC 1 cut(s) 596
PpsI GAGTC 1 cut(s) 596
PsiI TTATAA 1 cut(s) 540
Psp6I CCWGG 1 cut(s) 781
PspGI CCWGG 1 cut(s) 781
PspN4I GGNNCC 3 cut(s) 56, 233, 1029
PspPI GGNCC 3 cut(s) 88, 232, 554
RsaI GTAC 3 cut(s) 158, 466, 1024
RsaNI GTAC 3 cut(s) 157, 465, 1023
RseI CAYNNNNRTG 5 cut(s) 452, 807, 813, 819, 1041
SalI GTCGAC 1 cut(s) 149
Sau3AI GATC 9 cut(s) 166, 481, 577, 772, 811, 817, 823, 911, 967
Sau96I GGNCC 3 cut(s) 88, 232, 554
ScaI AGTACT 1 cut(s) 466
SchI GAGTC 1 cut(s) 596
ScrFI CCNGG 2 cut(s) 51, 783
SduI GDGCHC 1 cut(s) 11
SfcI CTRYAG 1 cut(s) 702
Sfr274I CTCGAG 1 cut(s) 749
SinI GGWCC 2 cut(s) 88, 232
SlaI CTCGAG 1 cut(s) 749
SmiMI CAYNNNNRTG 5 cut(s) 452, 807, 813, 819, 1041
SmlI CTYRAG 3 cut(s) 98, 749, 1055
SmoI CTYRAG 3 cut(s) 98, 749, 1055
Sse9I AATT 3 cut(s) 13, 400, 1114
SspMI CTAG 3 cut(s) 722, 1064, 1120
StyD4I CCNGG 2 cut(s) 49, 781
StyI CCWWGG 2 cut(s) 170, 227
TaaI ACNGT 2 cut(s) 1032, 1089
TaiI ACGT 3 cut(s) 197, 880, 909
TaqI TCGA 4 cut(s) 150, 750, 914, 947
TasI AATT 3 cut(s) 13, 400, 1114
TatI WGTACW 2 cut(s) 156, 464
TauI GCSGC 4 cut(s) 113, 259, 676, 679
TfiI GAWTC 1 cut(s) 1006
TseI GCWGC 9 cut(s) 40, 269, 670, 679, 694, 861, 926, 929, 1046
TspDTI ATGAA 5 cut(s) 6, 933, 950, 993, 1121
TspGWI ACGGA 2 cut(s) 86, 317
VpaK11BI GGWCC 2 cut(s) 88, 232
XapI RAATTY 2 cut(s) 13, 1114
XcmI CCANNNNNNNNNTGG 1 cut(s) 1107
XhoI CTCGAG 1 cut(s) 749
XmiI GTMKAC 1 cut(s) 150
XspI CTAG 3 cut(s) 722, 1064, 1120
ZrmI AGTACT 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.