pycom10g26230

Anthocyanidin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0010753
Physical Location & Seq
Reverse (-)
27626403 .. 27628910
2508 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 951 bp
ATGGCCACCCAACAACCCATCTCAAAGAAGACGGCTTGCGTCGTCGGCGGAACCGGTTTCGTGGCGTCTCTGCTGGTCAAGCTGCTGCTCCAGAAGGGCTACGCCGTCAGAACCACCGTCAGAGACCCTGACAACCATAAGAAGGTCTCCCACCTCACAGCACTACAAGAGTTGGGTGAGCTAGAGATTTTAGCAGGAGATCTAACTGATGAAGGGAGCTTCGATGCCCCAATAGCAGGCTGTGATCTTGTTTTCCATGTTGCAACCCCTGTCAACTTTGCCTCACAGGACCCAGAGAATGATATGATCAAACCAGCAATCCAAGGGGTACTAAATGTTCTGAAGTCGTGCGTGAAAGCCAAAACAGTTAAGCGCGTTGTTTTGACATCGTCAGCTGCTACAGTTTCGATCAATACACTTGACGGAACAGGTTTGGTCGTGGATGAAAAGGATTGGAGTGATTTGGAGTTCTTGACTACTGTCAAGCCACCCACTTGGTTGCAGGGGTACCCTGCCTCCAAGACACTAGCTGAGAAGACAGCTTGGAAATTTGCCGAAGAAAACAACATTGATCTAATCACTGTGATCCCTTCTCTTATGGCCGGTCCTTCTCTCACTCCAGACGTTCCCAGCAGTATCGGCCTTGCCATGGCTTTAATCACAGGAGATGATTTCCTCATAAATATGGCCCTGAAAGGTATGCAAATGCTATCAGGTTCGATATCCATTACACATGTGGAGGATGTCTGCCGGGCTCATATATTTTTGGCTGAGAAAGAATCTGCATCTGGTCGGTACATTTGCTGTGCTGCCAACGCTGGCGTTCCCGAGCTTGCTAAGTTCCTCAACAAAAGATACCCCCAGTACAAAGTCCCCACTGAGTTTGGAGATTTTCCGTCCAAGGCCAAACTGATCGATCTCTTCAGAGAAGCTTATCAAGGAGGGGTTTGA

Protein Analysis

317

Amino Acids

33.97

Weight (kDa)

5.61

Isoelectric Point (pI)

34.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 9 - 129 6e-11 NmrA-like family
Epimerase PF01370 13 - 262 1.8e-25 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 14 - 185 3.3e-18 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 14 - 132 2.6e-10 GDP-mannose 4,6 dehydratase
NAD_binding_4 PF07993 15 - 214 1.9e-14 Male sterility protein
NAD_binding_10 PF13460 16 - 134 2.9e-12 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 507
AccB1I GGYRCC 1 cut(s) 507
AccII CGCG 1 cut(s) 375
AciI CCGC 1 cut(s) 48
AclWI GGATC 1 cut(s) 580
AcoI YGGCCR 2 cut(s) 3, 600
AcsI RAATTY 1 cut(s) 548
AcuI CTGAAG 2 cut(s) 362, 907
AcyI GRCGYC 1 cut(s) 65
AfaI GTAC 4 cut(s) 330, 509, 797, 866
AfiI CCNNNNNNNGG 3 cut(s) 142, 236, 649
AflIII ACRYGT 1 cut(s) 733
AgeI ACCGGT 1 cut(s) 53
AluBI AGCT 8 cut(s) 82, 181, 219, 395, 530, 542, 832, 932
AluI AGCT 8 cut(s) 82, 181, 219, 395, 530, 542, 832, 932
Alw26I GTCTC 3 cut(s) 72, 117, 151
AlwI GGATC 1 cut(s) 580
Ama87I CYCGRG 1 cut(s) 827
AoxI GGCC 5 cut(s) 3, 600, 640, 687, 903
ApeKI GCWGC 4 cut(s) 82, 85, 395, 809
ApoI RAATTY 1 cut(s) 548
AsiGI ACCGGT 1 cut(s) 53
Asp718I GGTACC 1 cut(s) 507
AspLEI GCGC 1 cut(s) 375
AspS9I GGNCC 3 cut(s) 289, 605, 688
AsuC2I CCSGG 1 cut(s) 752
AsuHPI GGTGA 1 cut(s) 188
AvaI CYCGRG 1 cut(s) 827
AvaII GGWCC 2 cut(s) 289, 605
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 507
BanII GRGCYC 1 cut(s) 757
BbsI GAAGAC 2 cut(s) 35, 542
BbvI GCAGC 4 cut(s) 69, 72, 382, 796
BccI CCATC 1 cut(s) 26
BceAI ACGGC 2 cut(s) 48, 89
BclI TGATCA 1 cut(s) 306
BcnI CCSGG 1 cut(s) 752
BcoDI GTCTC 3 cut(s) 72, 117, 151
BfaI CTAG 2 cut(s) 182, 527
BfmI CTRYAG 1 cut(s) 399
BglII AGATCT 1 cut(s) 199
BisI GCNGC 4 cut(s) 83, 86, 396, 810
BlsI GCNGC 4 cut(s) 84, 87, 397, 811
Bme1390I CCNGG 1 cut(s) 752
Bme18I GGWCC 2 cut(s) 289, 605
BmeT110I CYCGRG 1 cut(s) 827
BmgT120I GGNCC 3 cut(s) 289, 605, 688
BmiI GGNNCC 3 cut(s) 52, 291, 509
BmrFI CCNGG 1 cut(s) 752
BmrI ACTGGG 1 cut(s) 856
BmsI GCATC 2 cut(s) 214, 794
BmuI ACTGGG 1 cut(s) 856
BoxI GACNNNNGTC 1 cut(s) 479
BpiI GAAGAC 2 cut(s) 35, 542
BpmI CTGGAG 2 cut(s) 74, 603
BpuMI CCSGG 1 cut(s) 752
Bsa29I ATCGAT 1 cut(s) 915
BsaHI GRCGYC 1 cut(s) 65
BsaI GGTCTC 2 cut(s) 117, 151
BsaJI CCNNGG 3 cut(s) 322, 648, 900
BsaWI WCCGGW 1 cut(s) 53
BsaXI ACNNNNNCTCC 2 cut(s) 500, 530
Bsc4I CCNNNNNNNGG 3 cut(s) 142, 236, 649
Bse118I RCCGGY 2 cut(s) 53, 602
Bse1I ACTGG 1 cut(s) 862
BseCI ATCGAT 1 cut(s) 915
BseDI CCNNGG 3 cut(s) 322, 648, 900
BseGI GGATG 2 cut(s) 448, 748
BseLI CCNNNNNNNGG 3 cut(s) 142, 236, 649
BseMII CTCAG 3 cut(s) 522, 762, 870
BseNI ACTGG 1 cut(s) 862
BseXI GCAGC 4 cut(s) 69, 72, 382, 796
BseYI CCCAGC 1 cut(s) 629
Bsh1236I CGCG 1 cut(s) 375
BshFI GGCC 5 cut(s) 5, 602, 642, 689, 905
BshNI GGYRCC 1 cut(s) 507
BshTI ACCGGT 1 cut(s) 53
BshVI ATCGAT 1 cut(s) 915
BsiHKCI CYCGRG 1 cut(s) 827
BsiSI CCGG 3 cut(s) 54, 603, 751
BslFI GGGAC 1 cut(s) 857
BslI CCNNNNNNNGG 3 cut(s) 142, 236, 649
BsmAI GTCTC 3 cut(s) 72, 117, 151
BsmBI CGTCTC 1 cut(s) 72
BsmFI GGGAC 1 cut(s) 857
BsnI GGCC 5 cut(s) 5, 602, 642, 689, 905
Bso31I GGTCTC 2 cut(s) 117, 151
BsoBI CYCGRG 1 cut(s) 827
Bsp1286I GDGCHC 1 cut(s) 757
Bsp143I GATC 8 cut(s) 199, 244, 306, 408, 571, 585, 912, 916
Bsp19I CCATGG 1 cut(s) 648
BspACI CCGC 1 cut(s) 48
BspANI GGCC 5 cut(s) 5, 602, 642, 689, 905
BspCNI CTCAG 3 cut(s) 523, 763, 871
BspDI ATCGAT 1 cut(s) 915
BspFNI CGCG 1 cut(s) 375
BspLI GGNNCC 3 cut(s) 52, 291, 509
BspPI GGATC 1 cut(s) 580
BspT107I GGYRCC 1 cut(s) 507
BspTNI GGTCTC 2 cut(s) 117, 151
BsrFI RCCGGY 2 cut(s) 53, 602
BsrI ACTGG 1 cut(s) 862
BssAI RCCGGY 2 cut(s) 53, 602
BssECI CCNNGG 3 cut(s) 322, 648, 900
BssMI GATC 8 cut(s) 199, 244, 306, 408, 571, 585, 912, 916
BssNI GRCGYC 1 cut(s) 65
BssT1I CCWWGG 3 cut(s) 322, 648, 900
Bst4CI ACNGT 5 cut(s) 118, 367, 403, 481, 583
Bst6I CTCTTC 1 cut(s) 926
BstACI GRCGYC 1 cut(s) 65
BstC8I GCNNGC 4 cut(s) 37, 238, 820, 834
BstDEI CTNAG 4 cut(s) 531, 771, 837, 879
BstDSI CCRYGG 1 cut(s) 648
BstF5I GGATG 2 cut(s) 448, 748
BstFNI CGCG 1 cut(s) 375
BstHHI GCGC 1 cut(s) 375
BstKTI GATC 8 cut(s) 202, 247, 309, 411, 574, 588, 915, 919
BstMAI GTCTC 3 cut(s) 72, 117, 151
BstMBI GATC 8 cut(s) 199, 244, 306, 408, 571, 585, 912, 916
BstMWI GCNNNNNNNGC 5 cut(s) 45, 79, 233, 639, 815
BstNSI RCATGY 1 cut(s) 737
BstPAI GACNNNNGTC 1 cut(s) 479
BstSCI CCNGG 1 cut(s) 750
BstSFI CTRYAG 1 cut(s) 399
BstUI CGCG 1 cut(s) 375
BstV1I GCAGC 4 cut(s) 69, 72, 382, 796
BstV2I GAAGAC 2 cut(s) 35, 542
BstX2I RGATCY 1 cut(s) 199
BstXI CCANNNNNNTGG 1 cut(s) 495
BstYI RGATCY 1 cut(s) 199
Bsu15I ATCGAT 1 cut(s) 915
BsuRI GGCC 5 cut(s) 5, 602, 642, 689, 905
BsuTUI ATCGAT 1 cut(s) 915
BtgI CCRYGG 1 cut(s) 648
BtsCI GGATG 2 cut(s) 448, 748
BtsIMutI CAGTG 2 cut(s) 579, 876
Cac8I GCNNGC 4 cut(s) 37, 238, 820, 834
CfoI GCGC 1 cut(s) 375
Cfr10I RCCGGY 2 cut(s) 53, 602
Cfr13I GGNCC 3 cut(s) 289, 605, 688
ClaI ATCGAT 1 cut(s) 915
CseI GACGC 2 cut(s) 28, 54
Csp6I GTAC 4 cut(s) 329, 508, 796, 865
CspAI ACCGGT 1 cut(s) 53
CspCI CAANNNNNGTGG 2 cut(s) 865, 900
CviAII CATG 3 cut(s) 257, 649, 734
CviQI GTAC 4 cut(s) 329, 508, 796, 865
DdeI CTNAG 4 cut(s) 531, 771, 837, 879
DpnI GATC 8 cut(s) 201, 246, 308, 410, 573, 587, 914, 918
DpnII GATC 8 cut(s) 199, 244, 306, 408, 571, 585, 912, 916
EaeI YGGCCR 2 cut(s) 3, 600
Eam1104I CTCTTC 1 cut(s) 926
EarI CTCTTC 1 cut(s) 926
EciI GGCGGA 1 cut(s) 63
Eco130I CCWWGG 3 cut(s) 322, 648, 900
Eco24I GRGCYC 1 cut(s) 757
Eco31I GGTCTC 2 cut(s) 117, 151
Eco32I GATATC 1 cut(s) 723
Eco47I GGWCC 2 cut(s) 289, 605
Eco57I CTGAAG 2 cut(s) 362, 907
Eco88I CYCGRG 1 cut(s) 827
EcoO109I RGGNCCY 1 cut(s) 289
EcoRV GATATC 1 cut(s) 723
EcoT14I CCWWGG 3 cut(s) 322, 648, 900
EcoT38I GRGCYC 1 cut(s) 757
ErhI CCWWGG 3 cut(s) 322, 648, 900
Esp3I CGTCTC 1 cut(s) 72
FaeI CATG 3 cut(s) 260, 652, 737
FaqI GGGAC 1 cut(s) 857
FatI CATG 3 cut(s) 256, 648, 733
FbaI TGATCA 1 cut(s) 306
Fnu4HI GCNGC 4 cut(s) 83, 86, 396, 810
FokI GGATG 2 cut(s) 455, 755
FriOI GRGCYC 1 cut(s) 757
Fsp4HI GCNGC 4 cut(s) 83, 86, 396, 810
FspBI CTAG 2 cut(s) 182, 527
GlaI GCGC 1 cut(s) 374
GluI GCNGC 4 cut(s) 83, 86, 396, 810
GsaI CCCAGC 1 cut(s) 633
GsuI CTGGAG 2 cut(s) 74, 603
HaeIII GGCC 5 cut(s) 5, 602, 642, 689, 905
HapII CCGG 3 cut(s) 54, 603, 751
HgaI GACGC 2 cut(s) 28, 54
HhaI GCGC 1 cut(s) 375
Hin1I GRCGYC 1 cut(s) 65
Hin1II CATG 3 cut(s) 260, 652, 737
Hin6I GCGC 1 cut(s) 373
HinP1I GCGC 1 cut(s) 373
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HindIII AAGCTT 1 cut(s) 930
HinfI GANTC 1 cut(s) 779
HpaII CCGG 3 cut(s) 54, 603, 751
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 4 cut(s) 110, 122, 342, 926
Hpy188III TCNNGA 4 cut(s) 91, 472, 620, 827
Hpy8I GTNNAC 1 cut(s) 274
Hpy99I CGWCG 2 cut(s) 44, 47
HpyAV CCTTC 5 cut(s) 88, 136, 206, 600, 618
HpyCH4III ACNGT 5 cut(s) 118, 367, 403, 481, 583
HpyCH4IV ACGT 1 cut(s) 624
HpyCH4V TGCA 4 cut(s) 263, 502, 703, 785
HpyF10VI GCNNNNNNNGC 5 cut(s) 45, 79, 233, 639, 815
HpyF3I CTNAG 4 cut(s) 531, 771, 837, 879
HpySE526I ACGT 1 cut(s) 624
Hsp92I GRCGYC 1 cut(s) 65
Hsp92II CATG 3 cut(s) 260, 652, 737
HspAI GCGC 1 cut(s) 373
KpnI GGTACC 1 cut(s) 511
Ksp22I TGATCA 1 cut(s) 306
Kzo9I GATC 8 cut(s) 199, 244, 306, 408, 571, 585, 912, 916
LmnI GCTCC 2 cut(s) 93, 216
Lsp1109I GCAGC 4 cut(s) 69, 72, 382, 796
LweI GCATC 2 cut(s) 214, 794
MaeI CTAG 2 cut(s) 182, 527
MaeII ACGT 1 cut(s) 624
MalI GATC 8 cut(s) 201, 246, 308, 410, 573, 587, 914, 918
MboI GATC 8 cut(s) 199, 244, 306, 408, 571, 585, 912, 916
MboII GAAGA 4 cut(s) 40, 547, 569, 913
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 1 cut(s) 757
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 548
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 7 cut(s) 164, 292, 526, 686, 733, 854, 935
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 369, 656
MslI CAYNNNNRTG 1 cut(s) 683
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 395
MspI CCGG 3 cut(s) 54, 603, 751
MspR9I CCNGG 1 cut(s) 752
MvnI CGCG 1 cut(s) 375
MwoI GCNNNNNNNGC 5 cut(s) 45, 79, 233, 639, 815
NciI CCSGG 1 cut(s) 752
NcoI CCATGG 1 cut(s) 648
NdeII GATC 8 cut(s) 199, 244, 306, 408, 571, 585, 912, 916
NlaIII CATG 3 cut(s) 260, 652, 737
NlaIV GGNNCC 3 cut(s) 52, 291, 509
NspI RCATGY 1 cut(s) 737
PciI ACATGT 1 cut(s) 733
PfeI GAWTC 1 cut(s) 779
PflFI GACNNNGTC 1 cut(s) 388
PinAI ACCGGT 1 cut(s) 53
PkrI GCNGC 4 cut(s) 84, 87, 397, 811
PpuMI RGGWCCY 1 cut(s) 289
PscI ACATGT 1 cut(s) 733
PshAI GACNNNNGTC 1 cut(s) 479
Psp5II RGGWCCY 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 629
PspN4I GGNNCC 3 cut(s) 52, 291, 509
PspPI GGNCC 3 cut(s) 289, 605, 688
PspPPI RGGWCCY 1 cut(s) 289
PsrI GAACNNNNNNTAC 2 cut(s) 321, 353
PsuI RGATCY 1 cut(s) 199
PsyI GACNNNGTC 1 cut(s) 388
PvuII CAGCTG 1 cut(s) 395
RsaI GTAC 4 cut(s) 330, 509, 797, 866
RsaNI GTAC 4 cut(s) 329, 508, 796, 865
RseI CAYNNNNRTG 1 cut(s) 683
SaqAI TTAA 2 cut(s) 369, 656
SatI GCNGC 4 cut(s) 83, 86, 396, 810
Sau3AI GATC 8 cut(s) 199, 244, 306, 408, 571, 585, 912, 916
Sau96I GGNCC 3 cut(s) 289, 605, 688
ScrFI CCNGG 1 cut(s) 752
SduI GDGCHC 1 cut(s) 757
SfaNI GCATC 2 cut(s) 214, 794
SfcI CTRYAG 1 cut(s) 399
SinI GGWCC 2 cut(s) 289, 605
SmiMI CAYNNNNRTG 1 cut(s) 683
Sse9I AATT 1 cut(s) 548
SsiI CCGC 1 cut(s) 48
SspMI CTAG 2 cut(s) 182, 527
StyD4I CCNGG 1 cut(s) 750
StyI CCWWGG 3 cut(s) 322, 648, 900
TaaI ACNGT 5 cut(s) 118, 367, 403, 481, 583
TaiI ACGT 1 cut(s) 627
TaqI TCGA 4 cut(s) 222, 407, 719, 915
TasI AATT 1 cut(s) 548
TatI WGTACW 1 cut(s) 864
TfiI GAWTC 1 cut(s) 779
Tru1I TTAA 2 cut(s) 369, 656
Tru9I TTAA 2 cut(s) 369, 656
TscAI CASTG 2 cut(s) 586, 883
TseI GCWGC 4 cut(s) 82, 85, 395, 809
TspDTI ATGAA 2 cut(s) 225, 459
TspGWI ACGGA 2 cut(s) 438, 885
TspRI CASTG 2 cut(s) 586, 883
Tth111I GACNNNGTC 1 cut(s) 388
VpaK11BI GGWCC 2 cut(s) 289, 605
XapI RAATTY 1 cut(s) 548
XceI RCATGY 1 cut(s) 737
XcmI CCANNNNNNNNNTGG 1 cut(s) 733
XspI CTAG 2 cut(s) 182, 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.