pycom10g27580

RbcX protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0011270
Physical Location & Seq
Forward (+)
28496429 .. 28498090
1662 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 537 bp
ATGGAATCCTCTGCGTCAATACTCCCACTCTCTCAGCTCCCTTCTGTTTTCCCACAAAAACCCAAAAGAAGCAATTTACCTTACAATCCTTCTTGGCTATCCAATTCCAAACCAAGAGCCTCTCGTCCCCCTCGCATGCACTGCCACAAGATGTATGTCCCTGGATTTGGAGAAGCGTCGCCGGAAGCAAAGGCGGCCAACAACCTCCACAGTTTCTTCACTTATGTTGCAGTTAGTATTGTCTGTGCTCAGCTTGAGAGTTACAACACGGAGGCATACGAAGAGCTGATGGAATTTCTGAGTAGGAACTCGTTGAATGATGGAGACCAATTCTGTGCCAATCTGATGAGAGAATCTTCCAGGCATAAGGGTCTAGCTTTGCGCATCCTAGAGGTTCGATCTGCATACTGTAAAAATGATTTCGAGTGGGACAACTTGCAGCGATTAGCCTTCAAGATGGTGGATGAATCCAATACGAGGCTCATGAGAGATTATGTCCTAGAAATAAGTCATGTGGAAGGTGAACAGGAGAAGTGA

Protein Analysis

179

Amino Acids

20.44

Weight (kDa)

6.52

Isoelectric Point (pI)

58.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RbcX PF02341 64 - 169 3.2e-29 RbcX protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 383
AciI CCGC 1 cut(s) 194
AcoI YGGCCR 1 cut(s) 195
AcsI RAATTY 1 cut(s) 293
AfiI CCNNNNNNNGG 2 cut(s) 167, 477
AgsI TTSAA 2 cut(s) 316, 454
AjnI CCWGG 2 cut(s) 160, 359
AluBI AGCT 4 cut(s) 37, 253, 286, 377
AluI AGCT 4 cut(s) 37, 253, 286, 377
Alw21I GWGCWC 1 cut(s) 250
Alw26I GTCTC 1 cut(s) 318
AoxI GGCC 1 cut(s) 195
ApeKI GCWGC 1 cut(s) 439
ApoI RAATTY 1 cut(s) 293
AspLEI GCGC 1 cut(s) 384
AsuHPI GGTGA 1 cut(s) 533
Bbv12I GWGCWC 1 cut(s) 250
BbvI GCAGC 1 cut(s) 451
BccI CCATC 3 cut(s) 283, 314, 451
BciT130I CCWGG 2 cut(s) 162, 361
BcoDI GTCTC 1 cut(s) 318
BfaI CTAG 3 cut(s) 374, 389, 500
BisI GCNGC 2 cut(s) 195, 440
BlpI GCTNAGC 1 cut(s) 249
BlsI GCNGC 2 cut(s) 196, 441
Bme1390I CCNGG 2 cut(s) 162, 361
BmrFI CCNGG 2 cut(s) 162, 361
BmsI GCATC 1 cut(s) 393
Bpu1102I GCTNAGC 1 cut(s) 249
BpuEI CTTGAG 1 cut(s) 275
BsaI GGTCTC 1 cut(s) 318
BsaJI CCNNGG 1 cut(s) 160
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 477
BseBI CCWGG 2 cut(s) 162, 361
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 2 cut(s) 384, 469
BseLI CCNNNNNNNGG 2 cut(s) 167, 477
BseMII CTCAG 3 cut(s) 47, 263, 290
BseXI GCAGC 1 cut(s) 451
BshFI GGCC 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 250
BsiSI CCGG 1 cut(s) 182
BslFI GGGAC 3 cut(s) 111, 143, 443
BslI CCNNNNNNNGG 2 cut(s) 167, 477
BsmAI GTCTC 1 cut(s) 318
BsmFI GGGAC 3 cut(s) 111, 143, 443
BsnI GGCC 1 cut(s) 197
Bso31I GGTCTC 1 cut(s) 318
Bsp1286I GDGCHC 1 cut(s) 250
Bsp143I GATC 1 cut(s) 398
Bsp1720I GCTNAGC 1 cut(s) 249
BspACI CCGC 1 cut(s) 194
BspANI GGCC 1 cut(s) 197
BspCNI CTCAG 3 cut(s) 46, 262, 291
BspHI TCATGA 1 cut(s) 483
BspQI GCTCTTC 1 cut(s) 276
BspTNI GGTCTC 1 cut(s) 318
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 1 cut(s) 398
Bst2UI CCWGG 2 cut(s) 162, 361
Bst4CI ACNGT 2 cut(s) 212, 410
Bst6I CTCTTC 1 cut(s) 276
BstAPI GCANNNNNTGC 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 137
BstDEI CTNAG 3 cut(s) 33, 249, 299
BstF5I GGATG 2 cut(s) 384, 469
BstHHI GCGC 1 cut(s) 384
BstKTI GATC 1 cut(s) 401
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 1 cut(s) 398
BstMWI GCNNNNNNNGC 2 cut(s) 141, 194
BstNI CCWGG 2 cut(s) 162, 361
BstNSI RCATGY 1 cut(s) 139
BstSCI CCNGG 2 cut(s) 160, 359
BstV1I GCAGC 1 cut(s) 451
BsuRI GGCC 1 cut(s) 197
BtsCI GGATG 2 cut(s) 384, 469
BtsI GCAGTG 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 137
CciI TCATGA 1 cut(s) 483
CfoI GCGC 1 cut(s) 384
CseI GACGC 2 cut(s) 3, 165
CviAII CATG 3 cut(s) 136, 484, 512
CviJI RGCY 9 cut(s) 37, 97, 119, 197, 253, 286, 377, 449, 481
CviKI_1 RGCY 9 cut(s) 37, 97, 119, 197, 253, 286, 377, 449, 481
DdeI CTNAG 3 cut(s) 33, 249, 299
DpnI GATC 1 cut(s) 400
DpnII GATC 1 cut(s) 398
EaeI YGGCCR 1 cut(s) 195
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
Eco31I GGTCTC 1 cut(s) 318
EcoRII CCWGG 2 cut(s) 160, 359
FaeI CATG 3 cut(s) 139, 487, 515
FaiI YATR 9 cut(s) 137, 156, 225, 277, 366, 406, 485, 495, 513
FaqI GGGAC 3 cut(s) 111, 143, 443
FatI CATG 3 cut(s) 135, 483, 511
Fnu4HI GCNGC 2 cut(s) 195, 440
FokI GGATG 2 cut(s) 371, 476
Fsp4HI GCNGC 2 cut(s) 195, 440
FspBI CTAG 3 cut(s) 374, 389, 500
FspI TGCGCA 1 cut(s) 383
GlaI GCGC 1 cut(s) 383
GluI GCNGC 2 cut(s) 195, 440
HaeIII GGCC 1 cut(s) 197
HapII CCGG 1 cut(s) 182
HgaI GACGC 2 cut(s) 3, 165
HhaI GCGC 1 cut(s) 384
Hin1II CATG 3 cut(s) 139, 487, 515
Hin6I GCGC 1 cut(s) 382
HinP1I GCGC 1 cut(s) 382
HinfI GANTC 3 cut(s) 5, 353, 467
HpaII CCGG 1 cut(s) 182
HphI GGTGA 1 cut(s) 533
Hpy166II GTNNAC 1 cut(s) 524
Hpy188I TCNGA 2 cut(s) 300, 345
Hpy188III TCNNGA 2 cut(s) 454, 484
Hpy8I GTNNAC 1 cut(s) 524
Hpy99I CGWCG 1 cut(s) 181
HpyAV CCTTC 4 cut(s) 51, 99, 460, 512
HpyCH4III ACNGT 2 cut(s) 212, 410
HpyCH4V TGCA 4 cut(s) 139, 230, 404, 439
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 194
HpyF3I CTNAG 3 cut(s) 33, 249, 299
Hsp92II CATG 3 cut(s) 139, 487, 515
HspAI GCGC 1 cut(s) 382
Kzo9I GATC 1 cut(s) 398
LguI GCTCTTC 1 cut(s) 276
LmnI GCTCC 1 cut(s) 42
LpnPI CCDG 6 cut(s) 147, 174, 195, 346, 373, 512
Lsp1109I GCAGC 1 cut(s) 451
LweI GCATC 1 cut(s) 393
MaeI CTAG 3 cut(s) 374, 389, 500
MaeIII GTNAC 1 cut(s) 260
MalI GATC 1 cut(s) 400
MboI GATC 1 cut(s) 398
MboII GAAGA 3 cut(s) 208, 293, 348
MhlI GDGCHC 1 cut(s) 250
MluCI AATT 4 cut(s) 73, 103, 293, 329
MnlI CCTC 7 cut(s) 19, 130, 141, 215, 265, 385, 471
MspI CCGG 1 cut(s) 182
MspR9I CCNGG 2 cut(s) 162, 361
MvaI CCWGG 2 cut(s) 162, 361
MwoI GCNNNNNNNGC 2 cut(s) 141, 194
NdeII GATC 1 cut(s) 398
NlaIII CATG 3 cut(s) 139, 487, 515
NsbI TGCGCA 1 cut(s) 383
NspI RCATGY 1 cut(s) 139
PaeI GCATGC 1 cut(s) 139
PagI TCATGA 1 cut(s) 483
PciSI GCTCTTC 1 cut(s) 276
PfeI GAWTC 3 cut(s) 5, 353, 467
PkrI GCNGC 2 cut(s) 196, 441
Psp6I CCWGG 2 cut(s) 160, 359
PspGI CCWGG 2 cut(s) 160, 359
SapI GCTCTTC 1 cut(s) 276
SatI GCNGC 2 cut(s) 195, 440
Sau3AI GATC 1 cut(s) 398
ScrFI CCNGG 2 cut(s) 162, 361
SduI GDGCHC 1 cut(s) 250
SetI ASST 8 cut(s) 39, 82, 207, 255, 288, 379, 396, 523
SfaNI GCATC 1 cut(s) 393
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
SphI GCATGC 1 cut(s) 139
Sse9I AATT 4 cut(s) 73, 103, 293, 329
SsiI CCGC 1 cut(s) 194
SspMI CTAG 3 cut(s) 374, 389, 500
StyD4I CCNGG 2 cut(s) 160, 359
TaaI ACNGT 2 cut(s) 212, 410
TaqI TCGA 2 cut(s) 397, 423
TasI AATT 4 cut(s) 73, 103, 293, 329
TauI GCSGC 1 cut(s) 197
TfiI GAWTC 3 cut(s) 5, 353, 467
TscAI CASTG 1 cut(s) 146
TseI GCWGC 1 cut(s) 439
TspDTI ATGAA 1 cut(s) 480
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 1 cut(s) 146
XapI RAATTY 1 cut(s) 293
XceI RCATGY 1 cut(s) 139
XspI CTAG 3 cut(s) 374, 389, 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.