Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0012313

Physical Location & Seq

Genomic Coordinates Reverse (-)

28662001 .. 28664862

Gene Structure 2862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGTCCTTCGTCTCGCAGCTAACCCTAAACCCTCTATTGCTAAACCCGCCACGCCACCGTCTCACCTCCAAGCCTTGCCTTCTCCTTGCGCGGATCTCTGTCGGGATCGCCGCTGCCAAATCCACCAACAAATTCAACTTGATCGTCGGGGCCCGACCATCGACCCGGGTCCGATCGGCGAACGATGACGAGAGGGAGGTCGAGTCGAGCGGGGATGTAAATGTGGCCGTGGAGGAGAAGCCGGCTGAGCCGGAGCCAGCGGAGATAAGTCGGCTGAAGAAGGCTTTGGTGGACTCGTTTTATGGGACTGACCGTGGGCTGAGCGCCACCAGCGAGACCCGGGCCGAGATTGTGGAGCTTATTACCCAGTTGGAGGCCAAAAACCCGACTCCGGCTCCGACCGAGGCCTTGCCTCTCCTCAATGGCAAATGGATTCTAGCGTATACTTCATTTGCGGGTCTGTTTCCGTTGTTGTCAAGAGGGACGCTTCCATTGGTGAAGGTTGAAGAGATATCTCAGACAATTGACTCTGATAATTTCACCGTACAAAACTCTGTCCAGTTTGCTGGACCGCTGGCTACCACTTCCATCAGCACCAACGCGACATTTGAAGTCCGAAGCCCCAAGCGCGTCCAGATTAAGTTTGAAGAAGGCGTAATTGGCACCCCACAACTAACAGACTCGCTGGTGATACCCGAAAATGTTGAGTTTCTAGGACAAAAAATCGAACTCGCACCCTTCAAAGGTTTGCTCAATTCTGTTCAAGATACTGCTTCATCTGTTGTAAAGACCATCTCCAGTCGACCCCCTTTTAAGTTCTCCATCTCAAGTAATGCCCAGTCGTGGTTGCTAACCACGTACCTCGATGGAGAGCTCCGGATTAGCAGGGGAGACAACGGCAGCGTGTTTGTGCTAATCAAGGAAGGCAGCCCCCTCTTGACTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0010033 GO:0010035 GO:0010109 GO:0010205 GO:0010287 GO:0010319 GO:0016020 GO:0019222 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042548 GO:0042651 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0097305 GO:1901700 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

316

Amino Acids

34.13

Weight (kDa)

5.72

Isoelectric Point (pI)

40.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	91 - 305	3.4e-78	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04020 AT4G22240
fragaria_vesca	FvH4_3g01310
malus_domestica	MD10G1327900.v1.1
prunus_persica	Prupe.4G014000_v2.0.a1
pyrus_communis	pycom10g27770
rosa_chinensis	RchiOBHm_Chr5g0001851
rosa_laevigata	RLG00000030965 RLG00000030977
rosa_multiflora	Rmu_co8379131.1_g000001 Rmu_sc0000378.1_g000002 Rmu_ssc0000237.1_g000008
rosa_roxburghii	Rroxscaffold_1G00071280 Rroxscaffold_1G00074500
rosa_rugosa	Rorug04G0393600
rosa_samantha	Rh5BG018200 Rh5CG015900 Rh5DG016300
rosa_wichuraiana	Rw5G001430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	662
AccBSI	CCGCTC	1 cut(s)	210
AccI	GTMKAC	2 cut(s)	443, 802
AccII	CGCG	3 cut(s)	91, 602, 630
AccIII	TCCGGA	1 cut(s)	876
AciI	CCGC	7 cut(s)	47, 91, 111, 210, 260, 455, 572
AclWI	GGATC	2 cut(s)	101, 113
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	131
AcuI	CTGAAG	1 cut(s)	296
AfaI	GTAC	2 cut(s)	546, 860
AfiI	CCNNNNNNNGG	4 cut(s)	373, 391, 743, 843
AgsI	TTSAA	6 cut(s)	136, 506, 611, 647, 742, 764
AjuI	GAANNNNNNNTTGG	4 cut(s)	269, 301, 642, 674
AluBI	AGCT	3 cut(s)	19, 358, 874
AluI	AGCT	3 cut(s)	19, 358, 874
Alw21I	GWGCWC	1 cut(s)	876
Alw26I	GTCTC	4 cut(s)	16, 65, 329, 885
AlwI	GGATC	2 cut(s)	101, 113
Ama87I	CYCGRG	2 cut(s)	165, 339
Aor13HI	TCCGGA	1 cut(s)	876
AoxI	GGCC	5 cut(s)	150, 225, 342, 375, 405
ApaI	GGGCCC	1 cut(s)	154
ApeKI	GCWGC	4 cut(s)	16, 113, 900, 927
ApoI	RAATTY	1 cut(s)	131
AspLEI	GCGC	3 cut(s)	91, 326, 630
AspS9I	GGNCC	5 cut(s)	150, 151, 169, 342, 569
AsuC2I	CCSGG	4 cut(s)	166, 167, 340, 341
AsuHPI	GGTGA	4 cut(s)	55, 508, 532, 700
AvaI	CYCGRG	2 cut(s)	165, 339
AvaII	GGWCC	2 cut(s)	169, 569
BaeGI	GKGCMC	1 cut(s)	154
BanI	GGYRCC	1 cut(s)	662
BanII	GRGCYC	2 cut(s)	154, 876
Bbv12I	GWGCWC	1 cut(s)	876
BbvI	GCAGC	4 cut(s)	28, 100, 912, 939
BccI	CCATC	5 cut(s)	166, 596, 800, 830, 860
BceAI	ACGGC	2 cut(s)	212, 913
BcnI	CCSGG	4 cut(s)	166, 167, 340, 341
BcoDI	GTCTC	4 cut(s)	16, 65, 329, 885
BfaI	CTAG	2 cut(s)	437, 713
BfoI	RGCGCY	1 cut(s)	327
BisI	GCNGC	5 cut(s)	17, 111, 114, 901, 928
BlpI	GCTNAGC	2 cut(s)	246, 320
BlsI	GCNGC	5 cut(s)	18, 112, 115, 902, 929
Bme1390I	CCNGG	4 cut(s)	166, 167, 340, 341
Bme18I	GGWCC	2 cut(s)	169, 569
BmeT110I	CYCGRG	2 cut(s)	165, 339
BmgT120I	GGNCC	5 cut(s)	150, 151, 169, 342, 569
BmiI	GGNNCC	6 cut(s)	151, 152, 170, 255, 396, 664
BmrFI	CCNGG	4 cut(s)	166, 167, 340, 341
BmrI	ACTGGG	2 cut(s)	361, 832
BmuI	ACTGGG	2 cut(s)	361, 832
BoxI	GACNNNNGTC	1 cut(s)	167
BpmI	CTGGAG	1 cut(s)	781
Bpu1102I	GCTNAGC	2 cut(s)	246, 320
BpuEI	CTTGAG	1 cut(s)	811
BpuMI	CCSGG	4 cut(s)	166, 167, 340, 341
BsaAI	YACGTR	1 cut(s)	858
BsaI	GGTCTC	1 cut(s)	329
BsaJI	CCNNGG	5 cut(s)	165, 228, 313, 339, 402
BsaWI	WCCGGW	1 cut(s)	876
BsaXI	ACNNNNNCTCC	4 cut(s)	188, 218, 379, 409
Bsc4I	CCNNNNNNNGG	4 cut(s)	373, 391, 743, 843
Bse118I	RCCGGY	1 cut(s)	241
Bse1I	ACTGG	4 cut(s)	367, 559, 798, 838
BseAI	TCCGGA	1 cut(s)	876
BseDI	CCNNGG	5 cut(s)	165, 228, 313, 339, 402
BseGI	GGATG	1 cut(s)	220
BseLI	CCNNNNNNNGG	4 cut(s)	373, 391, 743, 843
BseMII	CTCAG	3 cut(s)	237, 311, 530
BseNI	ACTGG	4 cut(s)	367, 559, 798, 838
BseRI	GAGGAG	2 cut(s)	248, 407
BseSI	GKGCMC	1 cut(s)	154
BseXI	GCAGC	4 cut(s)	28, 100, 912, 939
Bsh1236I	CGCG	3 cut(s)	91, 602, 630
Bsh1285I	CGRYCG	2 cut(s)	176, 402
BshFI	GGCC	5 cut(s)	152, 227, 344, 377, 407
BshNI	GGYRCC	1 cut(s)	662
BsiEI	CGRYCG	2 cut(s)	176, 402
BsiHKAI	GWGCWC	1 cut(s)	876
BsiHKCI	CYCGRG	2 cut(s)	165, 339
BsiSI	CCGG	6 cut(s)	166, 242, 251, 340, 392, 877
BslFI	GGGAC	2 cut(s)	319, 496
BslI	CCNNNNNNNGG	4 cut(s)	373, 391, 743, 843
BsmAI	GTCTC	4 cut(s)	16, 65, 329, 885
BsmBI	CGTCTC	2 cut(s)	16, 65
BsmFI	GGGAC	2 cut(s)	319, 496
BsnI	GGCC	5 cut(s)	152, 227, 344, 377, 407
Bso31I	GGTCTC	1 cut(s)	329
BsoBI	CYCGRG	2 cut(s)	165, 339
Bsp120I	GGGCCC	1 cut(s)	150
Bsp1286I	GDGCHC	2 cut(s)	154, 876
Bsp13I	TCCGGA	1 cut(s)	876
Bsp143I	GATC	4 cut(s)	93, 105, 141, 173
Bsp1720I	GCTNAGC	2 cut(s)	246, 320
BspACI	CCGC	7 cut(s)	47, 91, 111, 210, 260, 455, 572
BspANI	GGCC	5 cut(s)	152, 227, 344, 377, 407
BspCNI	CTCAG	3 cut(s)	238, 312, 529
BspEI	TCCGGA	1 cut(s)	876
BspFNI	CGCG	3 cut(s)	91, 602, 630
BspLI	GGNNCC	6 cut(s)	151, 152, 170, 255, 396, 664
BspPI	GGATC	2 cut(s)	101, 113
BspT107I	GGYRCC	1 cut(s)	662
BspTNI	GGTCTC	1 cut(s)	329
BsrBI	CCGCTC	1 cut(s)	210
BsrFI	RCCGGY	1 cut(s)	241
BsrI	ACTGG	4 cut(s)	367, 559, 798, 838
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	5 cut(s)	165, 228, 313, 339, 402
BssMI	GATC	4 cut(s)	93, 105, 141, 173
BssNAI	GTATAC	1 cut(s)	444
Bst1107I	GTATAC	1 cut(s)	444
Bst4CI	ACNGT	3 cut(s)	59, 314, 544
Bst6I	CTCTTC	1 cut(s)	501
BstBAI	YACGTR	1 cut(s)	858
BstC8I	GCNNGC	3 cut(s)	243, 258, 576
BstDEI	CTNAG	3 cut(s)	246, 320, 516
BstDSI	CCRYGG	2 cut(s)	228, 313
BstF5I	GGATG	1 cut(s)	220
BstFNI	CGCG	3 cut(s)	91, 602, 630
BstH2I	RGCGCY	1 cut(s)	327
BstHHI	GCGC	3 cut(s)	91, 326, 630
BstKTI	GATC	4 cut(s)	96, 108, 144, 176
BstMAI	GTCTC	4 cut(s)	16, 65, 329, 885
BstMBI	GATC	4 cut(s)	93, 105, 141, 173
BstMCI	CGRYCG	2 cut(s)	176, 402
BstMWI	GCNNNNNNNGC	5 cut(s)	46, 247, 330, 627, 660
BstPAI	GACNNNNGTC	1 cut(s)	167
BstSCI	CCNGG	4 cut(s)	164, 165, 338, 339
BstSLI	GKGCMC	1 cut(s)	154
BstUI	CGCG	3 cut(s)	91, 602, 630
BstV1I	GCAGC	4 cut(s)	28, 100, 912, 939
BstX2I	RGATCY	1 cut(s)	93
BstXI	CCANNNNNNTGG	1 cut(s)	566
BstYI	RGATCY	1 cut(s)	93
BstZ17I	GTATAC	1 cut(s)	444
BsuRI	GGCC	5 cut(s)	152, 227, 344, 377, 407
BtgI	CCRYGG	2 cut(s)	228, 313
BtsCI	GGATG	1 cut(s)	220
Cac8I	GCNNGC	3 cut(s)	243, 258, 576
CfoI	GCGC	3 cut(s)	91, 326, 630
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	5 cut(s)	150, 151, 169, 342, 569
Cfr9I	CCCGGG	2 cut(s)	165, 339
CseI	GACGC	2 cut(s)	493, 619
Csp6I	GTAC	2 cut(s)	545, 859
CviQI	GTAC	2 cut(s)	545, 859
DdeI	CTNAG	3 cut(s)	246, 320, 516
DpnI	GATC	4 cut(s)	95, 107, 143, 175
DpnII	GATC	4 cut(s)	93, 105, 141, 173
EaeI	YGGCCR	1 cut(s)	225
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
Ecl136II	GAGCTC	1 cut(s)	874
Eco147I	AGGCCT	1 cut(s)	407
Eco24I	GRGCYC	2 cut(s)	154, 876
Eco31I	GGTCTC	1 cut(s)	329
Eco32I	GATATC	1 cut(s)	513
Eco47I	GGWCC	2 cut(s)	169, 569
Eco53kI	GAGCTC	1 cut(s)	874
Eco57I	CTGAAG	1 cut(s)	296
Eco88I	CYCGRG	2 cut(s)	165, 339
EcoICRI	GAGCTC	1 cut(s)	874
EcoO109I	RGGNCCY	1 cut(s)	150
EcoRV	GATATC	1 cut(s)	513
EcoT38I	GRGCYC	2 cut(s)	154, 876
Esp3I	CGTCTC	2 cut(s)	16, 65
FaiI	YATR	2 cut(s)	303, 444
FaqI	GGGAC	2 cut(s)	319, 496
FauI	CCCGC	3 cut(s)	54, 203, 448
FblI	GTMKAC	2 cut(s)	443, 802
Fnu4HI	GCNGC	5 cut(s)	17, 111, 114, 901, 928
FokI	GGATG	1 cut(s)	227
FriOI	GRGCYC	2 cut(s)	154, 876
Fsp4HI	GCNGC	5 cut(s)	17, 111, 114, 901, 928
FspBI	CTAG	2 cut(s)	437, 713
GlaI	GCGC	3 cut(s)	90, 325, 629
GluI	GCNGC	5 cut(s)	17, 111, 114, 901, 928
GsuI	CTGGAG	1 cut(s)	781
HaeII	RGCGCY	1 cut(s)	327
HaeIII	GGCC	5 cut(s)	152, 227, 344, 377, 407
HapII	CCGG	6 cut(s)	166, 242, 251, 340, 392, 877
HgaI	GACGC	2 cut(s)	493, 619
HhaI	GCGC	3 cut(s)	91, 326, 630
Hin6I	GCGC	3 cut(s)	89, 324, 628
HinP1I	GCGC	3 cut(s)	89, 324, 628
HincII	GTYRAC	1 cut(s)	803
HindII	GTYRAC	1 cut(s)	803
HinfI	GANTC	7 cut(s)	203, 293, 388, 433, 527, 680, 940
HpaII	CCGG	6 cut(s)	166, 242, 251, 340, 392, 877
HphI	GGTGA	4 cut(s)	55, 508, 532, 700
Hpy166II	GTNNAC	3 cut(s)	292, 444, 803
Hpy188I	TCNGA	5 cut(s)	173, 399, 519, 532, 617
Hpy188III	TCNNGA	6 cut(s)	103, 477, 634, 764, 877, 937
Hpy8I	GTNNAC	3 cut(s)	292, 444, 803
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	7 cut(s)	16, 89, 274, 493, 644, 748, 917
HpyCH4III	ACNGT	3 cut(s)	59, 314, 544
HpyCH4IV	ACGT	1 cut(s)	857
HpyF10VI	GCNNNNNNNGC	5 cut(s)	46, 247, 330, 627, 660
HpyF3I	CTNAG	3 cut(s)	246, 320, 516
HpySE526I	ACGT	1 cut(s)	857
HspAI	GCGC	3 cut(s)	89, 324, 628
Kpn2I	TCCGGA	1 cut(s)	876
KroI	GCCGGC	1 cut(s)	241
KroNI	GCCGGC	1 cut(s)	243
Kzo9I	GATC	4 cut(s)	93, 105, 141, 173
LmnI	GCTCC	4 cut(s)	253, 355, 400, 879
Lsp1109I	GCAGC	4 cut(s)	28, 100, 912, 939
MaeI	CTAG	2 cut(s)	437, 713
MaeII	ACGT	1 cut(s)	857
MalI	GATC	4 cut(s)	95, 107, 143, 175
MbiI	CCGCTC	1 cut(s)	210
MboI	GATC	4 cut(s)	93, 105, 141, 173
MboII	GAAGA	3 cut(s)	289, 518, 659
MfeI	CAATTG	1 cut(s)	522
MflI	RGATCY	1 cut(s)	93
MhlI	GDGCHC	2 cut(s)	154, 876
MluCI	AATT	5 cut(s)	131, 522, 535, 657, 754
MlyI	GAGTC	6 cut(s)	212, 287, 382, 521, 674, 934
MmeI	TCCRAC	2 cut(s)	351, 422
MroI	TCCGGA	1 cut(s)	876
MroNI	GCCGGC	1 cut(s)	241
MseI	TTAA	2 cut(s)	639, 813
MspA1I	CMGCKG	3 cut(s)	113, 260, 574
MspI	CCGG	6 cut(s)	166, 242, 251, 340, 392, 877
MspR9I	CCNGG	4 cut(s)	166, 167, 340, 341
MunI	CAATTG	1 cut(s)	522
MvnI	CGCG	3 cut(s)	91, 602, 630
MwoI	GCNNNNNNNGC	5 cut(s)	46, 247, 330, 627, 660
NaeI	GCCGGC	1 cut(s)	243
NciI	CCSGG	4 cut(s)	166, 167, 340, 341
NdeII	GATC	4 cut(s)	93, 105, 141, 173
NgoMIV	GCCGGC	1 cut(s)	241
NlaIV	GGNNCC	6 cut(s)	151, 152, 170, 255, 396, 664
NmeAIII	GCCGAG	1 cut(s)	370
PceI	AGGCCT	1 cut(s)	407
PdiI	GCCGGC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	433
PkrI	GCNGC	5 cut(s)	18, 112, 115, 902, 929
Ple19I	CGATCG	1 cut(s)	176
PleI	GAGTC	6 cut(s)	211, 287, 382, 521, 674, 934
PpsI	GAGTC	6 cut(s)	211, 287, 382, 521, 674, 934
Ppu21I	YACGTR	1 cut(s)	858
PshAI	GACNNNNGTC	1 cut(s)	167
Psp124BI	GAGCTC	1 cut(s)	876
PspN4I	GGNNCC	6 cut(s)	151, 152, 170, 255, 396, 664
PspOMI	GGGCCC	1 cut(s)	150
PspPI	GGNCC	5 cut(s)	150, 151, 169, 342, 569
PsuI	RGATCY	1 cut(s)	93
PvuI	CGATCG	1 cut(s)	176
RsaI	GTAC	2 cut(s)	546, 860
RsaNI	GTAC	2 cut(s)	545, 859
SacI	GAGCTC	1 cut(s)	876
SalI	GTCGAC	1 cut(s)	801
SaqAI	TTAA	2 cut(s)	639, 813
SatI	GCNGC	5 cut(s)	17, 111, 114, 901, 928
Sau3AI	GATC	4 cut(s)	93, 105, 141, 173
Sau96I	GGNCC	5 cut(s)	150, 151, 169, 342, 569
SchI	GAGTC	6 cut(s)	212, 287, 382, 521, 674, 934
ScrFI	CCNGG	4 cut(s)	166, 167, 340, 341
SduI	GDGCHC	2 cut(s)	154, 876
SetI	ASST	9 cut(s)	21, 68, 201, 360, 504, 748, 860, 864, 876
SinI	GGWCC	2 cut(s)	169, 569
SmaI	CCCGGG	2 cut(s)	167, 341
SmlI	CTYRAG	1 cut(s)	826
SmoI	CTYRAG	1 cut(s)	826
Sse9I	AATT	5 cut(s)	131, 522, 535, 657, 754
SseBI	AGGCCT	1 cut(s)	407
SsiI	CCGC	7 cut(s)	47, 91, 111, 210, 260, 455, 572
SspMI	CTAG	2 cut(s)	437, 713
SstI	GAGCTC	1 cut(s)	876
StuI	AGGCCT	1 cut(s)	407
StyD4I	CCNGG	4 cut(s)	164, 165, 338, 339
TaaI	ACNGT	3 cut(s)	59, 314, 544
TaiI	ACGT	1 cut(s)	860
TaqI	TCGA	6 cut(s)	161, 201, 206, 726, 802, 864
TaqII	GACCGA	1 cut(s)	416
TasI	AATT	5 cut(s)	131, 522, 535, 657, 754
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	1 cut(s)	433
Tru1I	TTAA	2 cut(s)	639, 813
Tru9I	TTAA	2 cut(s)	639, 813
TseI	GCWGC	4 cut(s)	16, 113, 900, 927
TspDTI	ATGAA	2 cut(s)	438, 765
TspGWI	ACGGA	1 cut(s)	456
TspMI	CCCGGG	2 cut(s)	165, 339
VpaK11BI	GGWCC	2 cut(s)	169, 569
XapI	RAATTY	1 cut(s)	131
XmaI	CCCGGG	2 cut(s)	165, 339
XmiI	GTMKAC	2 cut(s)	443, 802
XspI	CTAG	2 cut(s)	437, 713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.