Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0002814

Physical Location & Seq

Genomic Coordinates Forward (+)

1073638 .. 1075380

Gene Structure 1743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTCTCAGGTAGCGGCAGATGTTCCCAAGGGTGGGTTCAGTTTTGATCTTTGTCGAAGAAATGACATGCTTGCAAAGAAGGGAGTTCAGCAGCCATCTTATAGGAAGACAGGGACCACCATTGTTGGTTTGATTTTTAAGGATGGTGTCATTCTTGGAGCTGATACAAGGGCAACTGAAGGACCCATTGTGTGTGATAAGAACTGTGAAAAGATCCATTATATGGCACCTAATATCTATTGCTGCGGAGCTGGAACTGCTGCTGATACAGAGGCTGTAACAGATATGGTGAGCTCACAGCTGCAACTGCATCGCTACCATACTGGTCGTGAATCTCGGGTTGTGACAGCCTTGACCTTGCTCAAGAAACACCTTTTCAAGTACAGTGTTATCGCTTCTCATTACCAAGGTCATGTGTCAGCTGCTTTGGTGCTCGGGGGTGTTGATGTCACTGGACCCCATCTGCATACTATATATCCCCATGGATCAACCGACACACTGCCATTTGCTACAATGGGTTCTGGTTCTCTTGCCGCAATGGCCATGTTTGAGTCCAAGTACAAAGAAGGCATGACTAGGGATGAAGGCATAAAGCTTGTAACTGAAGCAATATGCTCTGGAATTTTCAATGACTTGGGAAGTGGAAGCAATGTTGATGTTTGTGTAATAACTAAGGGACACAAGGAATACTTGAGGAACCACTTGGTGCCCACCCCTCGTACCTATGTCAGTGCAGAAGGCTATAAGTTTACCAAGAAGACTGAGGTTCTCTTCACAAAGATCACTCCGTTGACTAAGAAGGCGGAGGTGATTGAAGGAGGCGATGCAATGGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019774 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

280

Amino Acids

30.23

Weight (kDa)

8.09

Isoelectric Point (pI)

28.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	36 - 223	6.4e-49	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27430 AT3G27430 AT3G27430 AT5G40580 AT5G40580 AT5G40580 AT5G40580
fragaria_vesca	FvH4_6g52030 FvH4_6g52030
malus_domestica	MD09G1020800.v1.1
prunus_persica	Prupe.3G295500_v2.0.a1 Prupe.3G295500_v2.0.a1
pyrus_communis	pycom111g01750 pycom17g01770
rosa_chinensis	RchiOBHm_Chr2g0173491 RchiOBHm_Chr2g0173541 RchiOBHm_Chr3g0468681
rosa_laevigata	RLG00000022199
rosa_multiflora	Rmu_sc0002538.1_g000026 Rmu_sc0011538.1_g000006 Rmu_sc0025203.1_g000001 Rmu_sc0033138.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078800 Rroxscaffold_2G00078810 Rroxscaffold_6G00412650
rosa_rugosa	Rorug02G0571200
rosa_samantha	Rh2AG649400 Rh2AG649900 Rh2BG660000 Rh2BG660300 Rh2CG625300 Rh2DG675100 Rh2DG675700 Rh3AG145100 Rh3BG167600 Rh3DG166400
rosa_wichuraiana	Rw2G053320 Rw2G053340 Rw3G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	226, 706
AccB7I	CCANNNNNTGG	1 cut(s)	223
AciI	CCGC	4 cut(s)	14, 246, 534, 803
AclWI	GGATC	2 cut(s)	208, 493
AcoI	YGGCCR	1 cut(s)	540
AcsI	RAATTY	1 cut(s)	621
AcuI	CTGAAG	2 cut(s)	198, 624
AdeI	CACNNNGTG	1 cut(s)	706
AfaI	GTAC	3 cut(s)	383, 560, 721
AfiI	CCNNNNNNNGG	3 cut(s)	32, 33, 223
AgsI	TTSAA	3 cut(s)	379, 628, 815
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AluBI	AGCT	6 cut(s)	161, 251, 294, 301, 422, 595
AluI	AGCT	6 cut(s)	161, 251, 294, 301, 422, 595
Alw21I	GWGCWC	2 cut(s)	296, 435
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	2 cut(s)	208, 493
AlwNI	CAGNNNCTG	1 cut(s)	275
Ama87I	CYCGRG	2 cut(s)	336, 434
AoxI	GGCC	1 cut(s)	540
ApeKI	GCWGC	5 cut(s)	91, 243, 260, 301, 422
ApoI	RAATTY	1 cut(s)	621
AspS9I	GGNCC	3 cut(s)	114, 182, 455
AsuHPI	GGTGA	2 cut(s)	301, 820
AvaI	CYCGRG	2 cut(s)	336, 434
AvaII	GGWCC	3 cut(s)	114, 182, 455
BaeGI	GKGCMC	1 cut(s)	711
BalI	TGGCCA	1 cut(s)	542
BanI	GGYRCC	2 cut(s)	226, 706
BanII	GRGCYC	1 cut(s)	296
BbsI	GAAGAC	2 cut(s)	113, 764
Bbv12I	GWGCWC	2 cut(s)	296, 435
BbvI	GCAGC	5 cut(s)	103, 230, 247, 288, 409
BccI	CCATC	3 cut(s)	103, 137, 468
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	576
BglI	GCCNNNNNGGC	1 cut(s)	539
BisI	GCNGC	7 cut(s)	15, 92, 244, 261, 302, 423, 534
BlsI	GCNGC	7 cut(s)	16, 93, 245, 262, 303, 424, 535
Bme18I	GGWCC	3 cut(s)	114, 182, 455
BmeT110I	CYCGRG	2 cut(s)	336, 434
BmgT120I	GGNCC	3 cut(s)	114, 182, 455
BmiI	GGNNCC	6 cut(s)	115, 184, 228, 457, 698, 708
BmsI	GCATC	2 cut(s)	319, 814
BpiI	GAAGAC	2 cut(s)	113, 764
BpuEI	CTTGAG	2 cut(s)	347, 712
BsaJI	CCNNGG	3 cut(s)	27, 406, 481
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 33, 223
Bse1I	ACTGG	2 cut(s)	328, 457
Bse3DI	GCAATG	3 cut(s)	543, 655, 834
BseDI	CCNNGG	3 cut(s)	27, 406, 481
BseGI	GGATG	2 cut(s)	148, 586
BseLI	CCNNNNNNNGG	3 cut(s)	32, 33, 223
BseMI	GCAATG	3 cut(s)	543, 655, 834
BseMII	CTCAG	2 cut(s)	20, 753
BseNI	ACTGG	2 cut(s)	328, 457
BseSI	GKGCMC	1 cut(s)	711
BseXI	GCAGC	5 cut(s)	103, 230, 247, 288, 409
BsgI	GTGCAG	1 cut(s)	753
BshFI	GGCC	1 cut(s)	542
BshNI	GGYRCC	2 cut(s)	226, 706
BsiHKAI	GWGCWC	2 cut(s)	296, 435
BsiHKCI	CYCGRG	2 cut(s)	336, 434
BslFI	GGGAC	2 cut(s)	127, 690
BslI	CCNNNNNNNGG	3 cut(s)	32, 33, 223
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	2 cut(s)	127, 690
BsnI	GGCC	1 cut(s)	542
BsoBI	CYCGRG	2 cut(s)	336, 434
Bsp1286I	GDGCHC	3 cut(s)	296, 435, 711
Bsp143I	GATC	4 cut(s)	46, 213, 485, 780
Bsp19I	CCATGG	1 cut(s)	481
BspACI	CCGC	4 cut(s)	14, 246, 534, 803
BspANI	GGCC	1 cut(s)	542
BspCNI	CTCAG	2 cut(s)	19, 754
BspLI	GGNNCC	6 cut(s)	115, 184, 228, 457, 698, 708
BspPI	GGATC	2 cut(s)	208, 493
BspT107I	GGYRCC	2 cut(s)	226, 706
BsrDI	GCAATG	3 cut(s)	543, 655, 834
BsrI	ACTGG	2 cut(s)	328, 457
BssECI	CCNNGG	3 cut(s)	27, 406, 481
BssMI	GATC	4 cut(s)	46, 213, 485, 780
BssT1I	CCWWGG	3 cut(s)	27, 406, 481
Bst4CI	ACNGT	2 cut(s)	206, 386
Bst6I	CTCTTC	2 cut(s)	776, 828
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	4 cut(s)	6, 672, 762, 795
BstDSI	CCRYGG	1 cut(s)	481
BstF5I	GGATG	2 cut(s)	148, 586
BstKTI	GATC	4 cut(s)	49, 216, 488, 783
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	4 cut(s)	46, 213, 485, 780
BstMWI	GCNNNNNNNGC	3 cut(s)	257, 307, 539
BstNSI	RCATGY	1 cut(s)	70
BstSLI	GKGCMC	1 cut(s)	711
BstV1I	GCAGC	5 cut(s)	103, 230, 247, 288, 409
BstV2I	GAAGAC	2 cut(s)	113, 764
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	542
BtgI	CCRYGG	1 cut(s)	481
BtgZI	GCGATG	1 cut(s)	296
BtsCI	GGATG	2 cut(s)	148, 586
BtsI	GCAGTG	1 cut(s)	497
BtsIMutI	CAGTG	4 cut(s)	391, 450, 497, 736
Cac8I	GCNNGC	1 cut(s)	72
CaiI	CAGNNNCTG	1 cut(s)	275
Cfr13I	GGNCC	3 cut(s)	114, 182, 455
Csp6I	GTAC	3 cut(s)	382, 559, 720
CspCI	CAANNNNNGTGG	2 cut(s)	106, 141
CviAII	CATG	5 cut(s)	67, 413, 482, 544, 571
CviQI	GTAC	3 cut(s)	382, 559, 720
DdeI	CTNAG	4 cut(s)	6, 672, 762, 795
DpnI	GATC	4 cut(s)	48, 215, 487, 782
DpnII	GATC	4 cut(s)	46, 213, 485, 780
DraIII	CACNNNGTG	1 cut(s)	706
EaeI	YGGCCR	1 cut(s)	540
Eam1104I	CTCTTC	2 cut(s)	776, 828
EarI	CTCTTC	2 cut(s)	776, 828
EciI	GGCGGA	1 cut(s)	818
Ecl136II	GAGCTC	1 cut(s)	294
Eco130I	CCWWGG	3 cut(s)	27, 406, 481
Eco24I	GRGCYC	1 cut(s)	296
Eco47I	GGWCC	3 cut(s)	114, 182, 455
Eco53kI	GAGCTC	1 cut(s)	294
Eco57I	CTGAAG	2 cut(s)	198, 624
Eco88I	CYCGRG	2 cut(s)	336, 434
EcoICRI	GAGCTC	1 cut(s)	294
EcoO109I	RGGNCCY	1 cut(s)	182
EcoT14I	CCWWGG	3 cut(s)	27, 406, 481
EcoT38I	GRGCYC	1 cut(s)	296
ErhI	CCWWGG	3 cut(s)	27, 406, 481
FaeI	CATG	5 cut(s)	70, 416, 485, 547, 574
FalI	AAGNNNNNCTT	2 cut(s)	674, 706
FaqI	GGGAC	2 cut(s)	127, 690
FatI	CATG	5 cut(s)	66, 412, 481, 543, 570
Fnu4HI	GCNGC	7 cut(s)	15, 92, 244, 261, 302, 423, 534
FokI	GGATG	2 cut(s)	155, 593
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	7 cut(s)	15, 92, 244, 261, 302, 423, 534
FspBI	CTAG	1 cut(s)	576
GluI	GCNGC	7 cut(s)	15, 92, 244, 261, 302, 423, 534
HaeIII	GGCC	1 cut(s)	542
Hin1II	CATG	5 cut(s)	70, 416, 485, 547, 574
HincII	GTYRAC	1 cut(s)	792
HindII	GTYRAC	1 cut(s)	792
HindIII	AAGCTT	1 cut(s)	593
HinfI	GANTC	2 cut(s)	332, 551
HphI	GGTGA	2 cut(s)	301, 820
Hpy166II	GTNNAC	2 cut(s)	750, 792
Hpy188III	TCNNGA	3 cut(s)	329, 364, 618
Hpy8I	GTNNAC	2 cut(s)	750, 792
HpyAV	CCTTC	7 cut(s)	73, 173, 560, 578, 731, 793, 809
HpyCH4III	ACNGT	2 cut(s)	206, 386
HpyCH4V	TGCA	6 cut(s)	74, 304, 310, 466, 734, 827
HpyF10VI	GCNNNNNNNGC	3 cut(s)	257, 307, 539
HpyF3I	CTNAG	4 cut(s)	6, 672, 762, 795
Hsp92II	CATG	5 cut(s)	70, 416, 485, 547, 574
Kzo9I	GATC	4 cut(s)	46, 213, 485, 780
LmnI	GCTCC	2 cut(s)	158, 248
LpnPI	CCDG	6 cut(s)	96, 237, 309, 438, 507, 603
Lsp1109I	GCAGC	5 cut(s)	103, 230, 247, 288, 409
LweI	GCATC	2 cut(s)	319, 814
MaeI	CTAG	1 cut(s)	576
MaeIII	GTNAC	4 cut(s)	277, 343, 448, 598
MalI	GATC	4 cut(s)	48, 215, 487, 782
MboI	GATC	4 cut(s)	46, 213, 485, 780
MboII	GAAGA	4 cut(s)	69, 118, 763, 769
MflI	RGATCY	1 cut(s)	213
MhlI	GDGCHC	3 cut(s)	296, 435, 711
MlsI	TGGCCA	1 cut(s)	542
MluCI	AATT	1 cut(s)	621
MluNI	TGGCCA	1 cut(s)	542
MlyI	GAGTC	1 cut(s)	560
MnlI	CCTC	6 cut(s)	265, 687, 726, 757, 799, 812
Mox20I	TGGCCA	1 cut(s)	542
MscI	TGGCCA	1 cut(s)	542
MseI	TTAA	1 cut(s)	138
Msp20I	TGGCCA	1 cut(s)	542
MspA1I	CMGCKG	2 cut(s)	301, 422
MwoI	GCNNNNNNNGC	3 cut(s)	257, 307, 539
NcoI	CCATGG	1 cut(s)	481
NdeII	GATC	4 cut(s)	46, 213, 485, 780
NlaIII	CATG	5 cut(s)	70, 416, 485, 547, 574
NlaIV	GGNNCC	6 cut(s)	115, 184, 228, 457, 698, 708
NmuCI	GTSAC	2 cut(s)	343, 448
NspI	RCATGY	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	332
PflMI	CCANNNNNTGG	1 cut(s)	223
PkrI	GCNGC	7 cut(s)	16, 93, 245, 262, 303, 424, 535
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
PpuMI	RGGWCCY	1 cut(s)	182
Psp124BI	GAGCTC	1 cut(s)	296
Psp5II	RGGWCCY	1 cut(s)	182
PspN4I	GGNNCC	6 cut(s)	115, 184, 228, 457, 698, 708
PspPI	GGNCC	3 cut(s)	114, 182, 455
PspPPI	RGGWCCY	1 cut(s)	182
PstNI	CAGNNNCTG	1 cut(s)	275
PsuI	RGATCY	1 cut(s)	213
PvuII	CAGCTG	2 cut(s)	301, 422
RsaI	GTAC	3 cut(s)	383, 560, 721
RsaNI	GTAC	3 cut(s)	382, 559, 720
SacI	GAGCTC	1 cut(s)	296
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	7 cut(s)	15, 92, 244, 261, 302, 423, 534
Sau3AI	GATC	4 cut(s)	46, 213, 485, 780
Sau96I	GGNCC	3 cut(s)	114, 182, 455
SchI	GAGTC	1 cut(s)	560
SduI	GDGCHC	3 cut(s)	296, 435, 711
SfaNI	GCATC	2 cut(s)	319, 814
SinI	GGWCC	3 cut(s)	114, 182, 455
SmlI	CTYRAG	2 cut(s)	362, 691
SmoI	CTYRAG	2 cut(s)	362, 691
Sse9I	AATT	1 cut(s)	621
SsiI	CCGC	4 cut(s)	14, 246, 534, 803
SspMI	CTAG	1 cut(s)	576
SstI	GAGCTC	1 cut(s)	296
StyI	CCWWGG	3 cut(s)	27, 406, 481
TaaI	ACNGT	2 cut(s)	206, 386
TaqI	TCGA	1 cut(s)	55
TasI	AATT	1 cut(s)	621
TatI	WGTACW	2 cut(s)	381, 558
TauI	GCSGC	2 cut(s)	17, 536
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	4 cut(s)	391, 457, 504, 736
TseFI	GTSAC	2 cut(s)	343, 448
TseI	GCWGC	5 cut(s)	91, 243, 260, 301, 422
Tsp45I	GTSAC	2 cut(s)	343, 448
TspDTI	ATGAA	1 cut(s)	597
TspGWI	ACGGA	1 cut(s)	777
TspRI	CASTG	4 cut(s)	391, 457, 504, 736
Van91I	CCANNNNNTGG	1 cut(s)	223
VpaK11BI	GGWCC	3 cut(s)	114, 182, 455
XapI	RAATTY	1 cut(s)	621
XceI	RCATGY	1 cut(s)	70
XspI	CTAG	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.