Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0005361

Physical Location & Seq

Genomic Coordinates Reverse (-)

2224964 .. 2225796

Gene Structure 833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g03620.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGATTGATGTTGCTGAAGATTCAACGTTTCGTTTTGTTCCGTCTTCACAGCCTACACCAGCGACTCTTTATCTTGCAAAACGCTGCAAATGGGCTGGAAATGAAGAAATAGCAAAGCTTCAACATATCGAGGTTTGCCCCAAAGCAATGGAGTCGACTCAAACTATGGCTGAAAGAATTGCTTCCGACGGAGGTGGAGCTCTTATAATTGACTATGGCCTCAATGGAGTAGTATCAGATAGTCTGCAGGTCTGTTGCTTTTACTTTTGCAGTACTTCAATTTGTTGCAGGCCATTCGGAAACATAAATTTGTCAACATTCTGGATGATCCTGGCTCTGCTCGATCTTAGTGCATATGTTGATTTTGCTTCCATCAGGCACTCCGCTGAGGAAATTTCAGGAGAGATTTCTGTCCATGGCCCGATTACTCAGTCTCAGTTCCTTGGTTCTCTTGGGATAAATTTCCGAGCGGAAGCATTAACACAAAACTGTACAGAAGAACAATTCGAGTCTCTAAGGAACGGATACTGGCAACTGGTTGGCGAAGGTGAGGCCCCCTTCTGGGAGGGGGCTGATGAAAAAGCGCCCATCGGAATGGGCACTCGGTATTTGGCAATGGCCATTGTGAACAAGAAACAAGGAGTTCCTGTTCCATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Methyltransf_28

Protein Analysis

220

Amino Acids

24.01

Weight (kDa)

4.74

Isoelectric Point (pI)

50.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28700 AT3G28700 AT3G28700
fragaria_vesca	FvH4_6g49351 FvH4_6g49351 FvH4_6g49351
malus_domestica	MD09G1045900.v1.1 MD17G1046800.v1.1
prunus_persica	Prupe.3G272300_v2.0.a1
pyrus_communis	pycom111g03620 pycom111g03630 pycom17g04170
rosa_chinensis	RchiOBHm_Chr2g0169211
rosa_laevigata	RLG00000021842
rosa_multiflora	Rmu_co8486809.1_g000001 Rmu_sc0021002.1_g000001 Rmu_sc0021834.1_g000001 Rmu_ssc0000440.1_g000007
rosa_roxburghii	Rroxscaffold_2G00082350
rosa_rugosa	Rorug02G0538100 Rorug03G0277200 Rorug03G0277300 Rorug03G0277400
rosa_samantha	Rh2AG609600 Rh2BG622600 Rh2CG591100 Rh2DG633400 Rh4CG388500
rosa_wichuraiana	Rw2G050550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	206
Acc36I	ACCTGC	1 cut(s)	238
AccBSI	CCGCTC	1 cut(s)	470
AccI	GTMKAC	1 cut(s)	155
AciI	CCGC	2 cut(s)	384, 470
AclI	AACGTT	1 cut(s)	26
AclWI	GGATC	1 cut(s)	322
AcoI	YGGCCR	1 cut(s)	618
AcsI	RAATTY	3 cut(s)	307, 393, 460
AcuI	CTGAAG	1 cut(s)	36
AfaI	GTAC	2 cut(s)	274, 493
AfiI	CCNNNNNNNGG	2 cut(s)	561, 562
AgsI	TTSAA	3 cut(s)	24, 122, 279
AjnI	CCWGG	1 cut(s)	330
AloI	GAACNNNNNNTCC	1 cut(s)	633
AluBI	AGCT	2 cut(s)	118, 200
AluI	AGCT	2 cut(s)	118, 200
Alw21I	GWGCWC	1 cut(s)	202
Alw26I	GTCTC	2 cut(s)	438, 516
AlwI	GGATC	1 cut(s)	322
AoxI	GGCC	5 cut(s)	217, 290, 418, 552, 618
ApeKI	GCWGC	1 cut(s)	84
ApoI	RAATTY	3 cut(s)	307, 393, 460
Asp700I	GAANNNNTTC	1 cut(s)	181
AspLEI	GCGC	1 cut(s)	586
AspS9I	GGNCC	2 cut(s)	419, 553
AsuHPI	GGTGA	1 cut(s)	560
BaeGI	GKGCMC	1 cut(s)	602
BalI	TGGCCA	1 cut(s)	620
BanII	GRGCYC	1 cut(s)	202
BbsI	GAAGAC	1 cut(s)	36
Bbv12I	GWGCWC	1 cut(s)	202
BbvCI	CCTCAGC	1 cut(s)	387
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	2 cut(s)	380, 596
BcgI	CGANNNNNNTGC	6 cut(s)	135, 169, 277, 311, 332, 366
BciT130I	CCWGG	1 cut(s)	332
BciVI	GTATCC	1 cut(s)	518
BcoDI	GTCTC	2 cut(s)	438, 516
BfmI	CTRYAG	1 cut(s)	245
BfoI	RGCGCY	1 cut(s)	587
BfuAI	ACCTGC	1 cut(s)	238
BfuI	GTATCC	1 cut(s)	518
BisI	GCNGC	1 cut(s)	85
BlsI	GCNGC	1 cut(s)	86
BmcAI	AGTACT	1 cut(s)	274
Bme1390I	CCNGG	1 cut(s)	332
BmgT120I	GGNCC	2 cut(s)	419, 553
BmiI	GGNNCC	1 cut(s)	555
BmrFI	CCNGG	1 cut(s)	332
BpiI	GAAGAC	1 cut(s)	36
Bpu10I	CCTNAGC	1 cut(s)	387
BsaJI	CCNNGG	2 cut(s)	415, 442
BsaXI	ACNNNNNCTCC	1 cut(s)	633
Bsc4I	CCNNNNNNNGG	2 cut(s)	561, 562
Bse1I	ACTGG	2 cut(s)	533, 540
Bse3DI	GCAATG	2 cut(s)	153, 621
BseBI	CCWGG	1 cut(s)	332
BseDI	CCNNGG	2 cut(s)	415, 442
BseGI	GGATG	1 cut(s)	330
BseLI	CCNNNNNNNGG	2 cut(s)	561, 562
BseMI	GCAATG	2 cut(s)	153, 621
BseMII	CTCAG	3 cut(s)	378, 443, 449
BseNI	ACTGG	2 cut(s)	533, 540
BseSI	GKGCMC	1 cut(s)	602
BseXI	GCAGC	1 cut(s)	71
BshFI	GGCC	5 cut(s)	219, 292, 420, 554, 620
BsiHKAI	GWGCWC	1 cut(s)	202
BslI	CCNNNNNNNGG	2 cut(s)	561, 562
BsmAI	GTCTC	2 cut(s)	438, 516
BsnI	GGCC	5 cut(s)	219, 292, 420, 554, 620
Bsp1286I	GDGCHC	2 cut(s)	202, 602
Bsp1407I	TGTACA	1 cut(s)	491
Bsp143I	GATC	2 cut(s)	327, 343
Bsp19I	CCATGG	1 cut(s)	415
BspACI	CCGC	2 cut(s)	384, 470
BspANI	GGCC	5 cut(s)	219, 292, 420, 554, 620
BspCNI	CTCAG	3 cut(s)	379, 442, 448
BspLI	GGNNCC	1 cut(s)	555
BspMAI	CTGCAG	1 cut(s)	249
BspMI	ACCTGC	1 cut(s)	238
BspPI	GGATC	1 cut(s)	322
BsrBI	CCGCTC	1 cut(s)	470
BsrDI	GCAATG	2 cut(s)	153, 621
BsrGI	TGTACA	1 cut(s)	491
BsrI	ACTGG	2 cut(s)	533, 540
BssECI	CCNNGG	2 cut(s)	415, 442
BssMI	GATC	2 cut(s)	327, 343
BssT1I	CCWWGG	2 cut(s)	415, 442
Bst2UI	CCWGG	1 cut(s)	332
Bst4CI	ACNGT	1 cut(s)	491
BstAUI	TGTACA	1 cut(s)	491
BstC8I	GCNNGC	1 cut(s)	290
BstDEI	CTNAG	5 cut(s)	347, 387, 429, 435, 515
BstDSI	CCRYGG	1 cut(s)	415
BstF5I	GGATG	1 cut(s)	330
BstH2I	RGCGCY	1 cut(s)	587
BstHHI	GCGC	1 cut(s)	586
BstKTI	GATC	2 cut(s)	330, 346
BstMAI	GTCTC	2 cut(s)	438, 516
BstMBI	GATC	2 cut(s)	327, 343
BstNI	CCWGG	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	330
BstSFI	CTRYAG	1 cut(s)	245
BstSLI	GKGCMC	1 cut(s)	602
BstV1I	GCAGC	1 cut(s)	71
BstV2I	GAAGAC	1 cut(s)	36
BstXI	CCANNNNNNTGG	2 cut(s)	148, 595
BsuI	GTATCC	1 cut(s)	518
BsuRI	GGCC	5 cut(s)	219, 292, 420, 554, 620
BtgI	CCRYGG	1 cut(s)	415
BtsCI	GGATG	1 cut(s)	330
BveI	ACCTGC	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	290
CfoI	GCGC	1 cut(s)	586
Cfr13I	GGNCC	2 cut(s)	419, 553
Csp6I	GTAC	2 cut(s)	273, 492
CviAII	CATG	1 cut(s)	416
CviQI	GTAC	2 cut(s)	273, 492
DdeI	CTNAG	5 cut(s)	347, 387, 429, 435, 515
DpnI	GATC	2 cut(s)	329, 345
DpnII	GATC	2 cut(s)	327, 343
EaeI	YGGCCR	1 cut(s)	618
Ecl136II	GAGCTC	1 cut(s)	200
Eco130I	CCWWGG	2 cut(s)	415, 442
Eco24I	GRGCYC	1 cut(s)	202
Eco53kI	GAGCTC	1 cut(s)	200
Eco57I	CTGAAG	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	200
EcoO109I	RGGNCCY	1 cut(s)	553
EcoRII	CCWGG	1 cut(s)	330
EcoT14I	CCWWGG	2 cut(s)	415, 442
EcoT38I	GRGCYC	1 cut(s)	202
ErhI	CCWWGG	2 cut(s)	415, 442
FaeI	CATG	1 cut(s)	419
FaiI	YATR	8 cut(s)	126, 167, 206, 216, 305, 355, 357, 417
FalI	AAGNNNNNCTT	2 cut(s)	166, 198
FatI	CATG	1 cut(s)	415
FauNDI	CATATG	1 cut(s)	355
FblI	GTMKAC	1 cut(s)	155
Fnu4HI	GCNGC	1 cut(s)	85
FokI	GGATG	1 cut(s)	337
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	1 cut(s)	85
GlaI	GCGC	1 cut(s)	585
GluI	GCNGC	1 cut(s)	85
HaeII	RGCGCY	1 cut(s)	587
HaeIII	GGCC	5 cut(s)	219, 292, 420, 554, 620
HhaI	GCGC	1 cut(s)	586
Hin1II	CATG	1 cut(s)	419
Hin6I	GCGC	1 cut(s)	584
HinP1I	GCGC	1 cut(s)	584
HincII	GTYRAC	2 cut(s)	156, 315
HindII	GTYRAC	2 cut(s)	156, 315
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	5 cut(s)	20, 64, 152, 157, 509
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	3 cut(s)	156, 315, 628
Hpy188I	TCNGA	5 cut(s)	187, 238, 299, 467, 593
Hpy188III	TCNNGA	2 cut(s)	322, 399
Hpy8I	GTNNAC	3 cut(s)	156, 315, 628
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	2 cut(s)	539, 568
HpyCH4III	ACNGT	1 cut(s)	491
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	6 cut(s)	77, 87, 247, 270, 288, 353
HpyF3I	CTNAG	5 cut(s)	347, 387, 429, 435, 515
HpySE526I	ACGT	1 cut(s)	26
Hsp92II	CATG	1 cut(s)	419
HspAI	GCGC	1 cut(s)	584
Kzo9I	GATC	2 cut(s)	327, 343
LmnI	GCTCC	1 cut(s)	197
Lsp1109I	GCAGC	1 cut(s)	71
MaeII	ACGT	1 cut(s)	26
MalI	GATC	2 cut(s)	329, 345
MbiI	CCGCTC	1 cut(s)	470
MboI	GATC	2 cut(s)	327, 343
MboII	GAAGA	4 cut(s)	29, 36, 116, 509
MhlI	GDGCHC	2 cut(s)	202, 602
MlsI	TGGCCA	1 cut(s)	620
MluCI	AATT	7 cut(s)	177, 207, 279, 307, 393, 460, 503
MluNI	TGGCCA	1 cut(s)	620
MlyI	GAGTC	4 cut(s)	58, 151, 161, 518
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	6 cut(s)	124, 185, 230, 382, 544, 559
Mox20I	TGGCCA	1 cut(s)	620
MroXI	GAANNNNTTC	1 cut(s)	181
MscI	TGGCCA	1 cut(s)	620
MseI	TTAA	1 cut(s)	479
MslI	CAYNNNNRTG	1 cut(s)	593
Msp20I	TGGCCA	1 cut(s)	620
MspA1I	CMGCKG	1 cut(s)	386
MspR9I	CCNGG	1 cut(s)	332
MvaI	CCWGG	1 cut(s)	332
NcoI	CCATGG	1 cut(s)	415
NdeI	CATATG	1 cut(s)	355
NdeII	GATC	2 cut(s)	327, 343
NlaIII	CATG	1 cut(s)	419
NlaIV	GGNNCC	1 cut(s)	555
PdmI	GAANNNNTTC	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	86
PleI	GAGTC	4 cut(s)	58, 151, 160, 517
PpsI	GAGTC	4 cut(s)	58, 151, 160, 517
PsiI	TTATAA	1 cut(s)	206
Psp124BI	GAGCTC	1 cut(s)	202
Psp1406I	AACGTT	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	330
PspN4I	GGNNCC	1 cut(s)	555
PspPI	GGNCC	2 cut(s)	419, 553
PstI	CTGCAG	1 cut(s)	249
RsaI	GTAC	2 cut(s)	274, 493
RsaNI	GTAC	2 cut(s)	273, 492
RseI	CAYNNNNRTG	1 cut(s)	593
SacI	GAGCTC	1 cut(s)	202
SalI	GTCGAC	1 cut(s)	154
SaqAI	TTAA	1 cut(s)	479
SatI	GCNGC	1 cut(s)	85
Sau3AI	GATC	2 cut(s)	327, 343
Sau96I	GGNCC	2 cut(s)	419, 553
ScaI	AGTACT	1 cut(s)	274
SchI	GAGTC	4 cut(s)	58, 151, 161, 518
ScrFI	CCNGG	1 cut(s)	332
SduI	GDGCHC	2 cut(s)	202, 602
SetI	ASST	7 cut(s)	29, 120, 135, 196, 202, 252, 550
SfcI	CTRYAG	1 cut(s)	245
SmiMI	CAYNNNNRTG	1 cut(s)	593
Sse9I	AATT	7 cut(s)	177, 207, 279, 307, 393, 460, 503
SsiI	CCGC	2 cut(s)	384, 470
SstI	GAGCTC	1 cut(s)	202
StyD4I	CCNGG	1 cut(s)	330
StyI	CCWWGG	2 cut(s)	415, 442
TaaI	ACNGT	1 cut(s)	491
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	4 cut(s)	129, 155, 342, 507
TasI	AATT	7 cut(s)	177, 207, 279, 307, 393, 460, 503
TatI	WGTACW	2 cut(s)	272, 491
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	1 cut(s)	479
Tru9I	TTAA	1 cut(s)	479
TseI	GCWGC	1 cut(s)	84
TspDTI	ATGAA	2 cut(s)	117, 591
TspGWI	ACGGA	3 cut(s)	30, 204, 537
XapI	RAATTY	3 cut(s)	307, 393, 460
XmiI	GTMKAC	1 cut(s)	155
XmnI	GAANNNNTTC	1 cut(s)	181
ZrmI	AGTACT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.