RLG00000021842

Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH ubiquinone oxidoreductase complex (complex I)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005361
Physical Location & Seq
Forward (+)
78760837 .. 78763652
2816 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021842

Sequence Viewer

Length: 1440 bp
ATGTTGAGACGACTACTCCTACAAGCCTCCACTACTCGTCGCCTTGCCGGTGCCCACTTCACTCCACCATCTCCACCTCCTTTACTTCGTTATCGTCCTCTTTCTTCTTCTTCTTCTTCAACCCAAATCCCAGAGACTCATTTGGAGGACAACTCTGACCAACCCTCTGCCACCATCTCCATCGACCGCTCCGGCCTCTGCAATCCCCCCGAGCATTGCCATGAACCCTGTTCCGACTCCGAGCTCGTCAAGCACCTCAAAGGCATCATCAAGTTCCGCGGTGGCCCAATCTCGGTGGCTGAGTATATGGAGGAGGTTTTGACGAACCCGAAAGCTGGGTTCTACATGAACCGTGATGTGTTTGGAGCCGGAGGTGATTTTATCACCTCCCCAGAAGTGAGCCAGATGTTTGGGGAGATGGTTGGTGTGTGGGCGATGTCTCTGTGGGAGCAGATGGGGCAGCCAGGAAAAATGAACCTGGTAGAGCTAGGTCCAGGAAGAGGAACTCTCATGGCCGACCTTCTTCGGGGTGCGTCGAAGTTTAAGAACTTCACTGAATCGTTGCATGTACACATGGTGGAGTGCAGTCCTGCATTACAGAAGCTCCAGTACCAGGCCCTGAAATGTGTAGATGAAGAAGAGGGTACGGCTGACACGGCTGAGAAAAGGACTGTCAGCACTTTGGCTAAAACTCCTGTGTCATGGCATGCCACATTGGACCAGGTTCCTTCAGGATTGCCATCTATTATCATCGCCCATGAGTTTTATGATGCTTTACCAGTTCATCAATTTCAGAGGGCTTCTCGTGGCTGGTGTGAGAAAATGGTGGATGTTGCAGAAGATTCAAAGTTCCGTTTTGTTCTTTCTTCACAGCCTACACCAGCAACGCTTTATCTGGCAAAACGCTGCAAATGGGCTGGAATGGAAGAAATAGCAAAGCTTGATCATGTTGAGGTTTGCCCTGCATCAATGGAGTTGACTCAAAGTATCGCGGATAGAATTGCTTCTGATGGGGGTGGTGCTCTTGTAATTGATTATGGTCAGAATGGAGTAGTTTCTGACAGTCTGCAGGCAATTCGGAAACATAAATTTGTTGACATTCTAGACAATCCAGGATCTGCTGATCTCAGTGCCTATGTTGATTTTGCTTCCATCAGGCATTCTGCTGAGGAAGCTTCAGGAGATGTGTCTGTTCATGGCCCTATTACTCAGTCTCAGTTCCTTGGCTCTCTTGGGATAAATTTCCGAGTGGAAGCATTATTACAGAACTGCACGGAGGAACAATTTGAATCTCTCAGGTCAGGGTATTGGCAACTGGTTGGAGAAGGTGAGGCTCCCTTCTGGGAGGGTCCTGACGAAAAAGTTCCCATCGGTATGGGTACCCGTTATTTGGTAATGGCTATTGTGAACAAGAAGCAAGGTGTTCCAGTCCCATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
Methyltransf_28

Protein Analysis

480

Amino Acids

52.53

Weight (kDa)

5.38

Isoelectric Point (pI)

50.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_28 PF02636 140 - 401 6.7e-65 Putative S-adenosyl-L-methionine-dependent methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1379
AccB1I GGYRCC 2 cut(s) 50, 1379
AccBSI CCGCTC 1 cut(s) 189
AccII CGCG 2 cut(s) 279, 992
AciI CCGC 4 cut(s) 187, 277, 279, 992
AclWI GGATC 1 cut(s) 1123
AcoI YGGCCR 1 cut(s) 513
AcsI RAATTY 2 cut(s) 1088, 1240
AcuI CTGAAG 2 cut(s) 714, 1161
AdeI CACNNNGTG 1 cut(s) 577
AfaI GTAC 4 cut(s) 570, 611, 646, 1381
AfiI CCNNNNNNNGG 6 cut(s) 292, 335, 500, 526, 613, 1390
AgsI TTSAA 3 cut(s) 120, 846, 1289
AjnI CCWGG 6 cut(s) 463, 477, 493, 612, 720, 1111
AluBI AGCT 6 cut(s) 244, 335, 487, 604, 940, 1175
AluI AGCT 6 cut(s) 244, 335, 487, 604, 940, 1175
Alw21I GWGCWC 2 cut(s) 246, 1024
Alw26I GTCTC 3 cut(s) 128, 444, 1218
AlwI GGATC 1 cut(s) 1123
AlwNI CAGNNNCTG 2 cut(s) 619, 1118
Ama87I CYCGRG 1 cut(s) 209
AoxI GGCC 5 cut(s) 193, 283, 513, 615, 1198
ApeKI GCWGC 2 cut(s) 460, 906
ApoI RAATTY 2 cut(s) 1088, 1240
Asp700I GAANNNNTTC 2 cut(s) 1003, 1362
Asp718I GGTACC 1 cut(s) 1379
AspS9I GGNCC 6 cut(s) 284, 491, 616, 718, 1199, 1349
AsuHPI GGTGA 3 cut(s) 376, 386, 1340
AvaI CYCGRG 1 cut(s) 209
AvaII GGWCC 3 cut(s) 491, 718, 1349
BaeGI GKGCMC 1 cut(s) 55
BanI GGYRCC 2 cut(s) 50, 1379
BanII GRGCYC 1 cut(s) 246
BarI GAAGNNNNNNTAC 4 cut(s) 593, 625, 1245, 1277
BauI CACGAG 1 cut(s) 804
Bbv12I GWGCWC 2 cut(s) 246, 1024
BbvCI CCTCAGC 1 cut(s) 1167
BbvI GCAGC 2 cut(s) 472, 893
BccI CCATC 9 cut(s) 76, 182, 188, 412, 448, 748, 1004, 1160, 1376
BceAI ACGGC 2 cut(s) 663, 672
BcgI CGANNNNNNTGC 2 cut(s) 1058, 1092
BciT130I CCWGG 6 cut(s) 465, 479, 495, 614, 722, 1113
BclI TGATCA 1 cut(s) 943
BcoDI GTCTC 3 cut(s) 128, 444, 1218
BfaI CTAG 2 cut(s) 488, 1103
BfmI CTRYAG 1 cut(s) 1067
BisI GCNGC 2 cut(s) 461, 907
BlsI GCNGC 2 cut(s) 462, 908
Bme1390I CCNGG 6 cut(s) 465, 479, 495, 614, 722, 1113
Bme18I GGWCC 3 cut(s) 491, 718, 1349
BmeT110I CYCGRG 1 cut(s) 209
BmgT120I GGNCC 6 cut(s) 284, 491, 616, 718, 1199, 1349
BmiI GGNNCC 6 cut(s) 52, 367, 726, 1335, 1350, 1381
BmrFI CCNGG 6 cut(s) 465, 479, 495, 614, 722, 1113
BmsI GCATC 3 cut(s) 273, 760, 974
BplI GAGNNNNNCTC 6 cut(s) 137, 169, 492, 524, 787, 819
BpmI CTGGAG 1 cut(s) 590
Bpu10I CCTNAGC 1 cut(s) 1167
BsaBI GATNNNNATC 1 cut(s) 739
BsaJI CCNNGG 2 cut(s) 277, 1222
BsaXI ACNNNNNCTCC 3 cut(s) 30, 588, 618
Bsc4I CCNNNNNNNGG 6 cut(s) 292, 335, 500, 526, 613, 1390
Bse118I RCCGGY 1 cut(s) 47
Bse1I ACTGG 4 cut(s) 607, 779, 1320, 1427
Bse3DI GCAATG 1 cut(s) 214
Bse8I GATNNNNATC 1 cut(s) 739
BseBI CCWGG 6 cut(s) 465, 479, 495, 614, 722, 1113
BseDI CCNNGG 2 cut(s) 277, 1222
BseGI GGATG 1 cut(s) 835
BseJI GATNNNNATC 1 cut(s) 739
BseLI CCNNNNNNNGG 6 cut(s) 292, 335, 500, 526, 613, 1390
BseMI GCAATG 1 cut(s) 214
BseMII CTCAG 7 cut(s) 291, 651, 1141, 1158, 1223, 1229, 1309
BseNI ACTGG 4 cut(s) 607, 779, 1320, 1427
BseRI GAGGAG 1 cut(s) 326
BseSI GKGCMC 1 cut(s) 55
BseXI GCAGC 2 cut(s) 472, 893
BseYI CCCAGC 1 cut(s) 335
BsgI GTGCAG 2 cut(s) 604, 1255
Bsh1236I CGCG 2 cut(s) 279, 992
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 5 cut(s) 195, 285, 515, 617, 1200
BshNI GGYRCC 2 cut(s) 50, 1379
BsiEI CGRYCG 1 cut(s) 187
BsiHKAI GWGCWC 2 cut(s) 246, 1024
BsiHKCI CYCGRG 1 cut(s) 209
BsiSI CCGG 3 cut(s) 48, 192, 369
BslFI GGGAC 1 cut(s) 1415
BslI CCNNNNNNNGG 6 cut(s) 292, 335, 500, 526, 613, 1390
BsmAI GTCTC 3 cut(s) 128, 444, 1218
BsmFI GGGAC 1 cut(s) 1415
BsmI GAATGC 1 cut(s) 1159
BsnI GGCC 5 cut(s) 195, 285, 515, 617, 1200
BsoBI CYCGRG 1 cut(s) 209
Bsp1286I GDGCHC 3 cut(s) 55, 246, 1024
Bsp1407I TGTACA 1 cut(s) 568
Bsp143I GATC 3 cut(s) 943, 1115, 1123
BspACI CCGC 4 cut(s) 187, 277, 279, 992
BspANI GGCC 5 cut(s) 195, 285, 515, 617, 1200
BspCNI CTCAG 7 cut(s) 292, 652, 1140, 1159, 1222, 1228, 1308
BspFNI CGCG 2 cut(s) 279, 992
BspLI GGNNCC 6 cut(s) 52, 367, 726, 1335, 1350, 1381
BspMAI CTGCAG 1 cut(s) 1071
BspPI GGATC 1 cut(s) 1123
BspT107I GGYRCC 2 cut(s) 50, 1379
BsrBI CCGCTC 1 cut(s) 189
BsrDI GCAATG 1 cut(s) 214
BsrFI RCCGGY 1 cut(s) 47
BsrGI TGTACA 1 cut(s) 568
BsrI ACTGG 4 cut(s) 607, 779, 1320, 1427
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 277, 1222
BssMI GATC 3 cut(s) 943, 1115, 1123
BssSI CACGAG 1 cut(s) 804
BssT1I CCWWGG 1 cut(s) 1222
Bst2BI CACGAG 1 cut(s) 804
Bst2UI CCWGG 6 cut(s) 465, 479, 495, 614, 722, 1113
Bst4CI ACNGT 3 cut(s) 353, 673, 1064
Bst6I CTCTTC 2 cut(s) 493, 633
BstAUI TGTACA 1 cut(s) 568
BstC8I GCNNGC 2 cut(s) 708, 1071
BstDEI CTNAG 7 cut(s) 300, 660, 1127, 1167, 1209, 1215, 1295
BstDSI CCRYGG 1 cut(s) 277
BstF5I GGATG 1 cut(s) 835
BstFNI CGCG 2 cut(s) 279, 992
BstKTI GATC 3 cut(s) 946, 1118, 1126
BstMAI GTCTC 3 cut(s) 128, 444, 1218
BstMBI GATC 3 cut(s) 943, 1115, 1123
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 4 cut(s) 250, 457, 656, 1172
BstNI CCWGG 6 cut(s) 465, 479, 495, 614, 722, 1113
BstNSI RCATGY 2 cut(s) 569, 710
BstSCI CCNGG 6 cut(s) 463, 477, 493, 612, 720, 1111
BstSFI CTRYAG 1 cut(s) 1067
BstSLI GKGCMC 1 cut(s) 55
BstUI CGCG 2 cut(s) 279, 992
BstV1I GCAGC 2 cut(s) 472, 893
BstX2I RGATCY 1 cut(s) 1115
BstXI CCANNNNNNTGG 2 cut(s) 410, 1375
BstYI RGATCY 1 cut(s) 1115
BsuRI GGCC 5 cut(s) 195, 285, 515, 617, 1200
BtgI CCRYGG 1 cut(s) 277
BtgZI GCGATG 2 cut(s) 449, 736
BtsCI GGATG 1 cut(s) 835
BtsIMutI CAGTG 2 cut(s) 552, 1135
Cac8I GCNNGC 2 cut(s) 708, 1071
CaiI CAGNNNCTG 2 cut(s) 619, 1118
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 6 cut(s) 284, 491, 616, 718, 1199, 1349
Cfr42I CCGCGG 1 cut(s) 280
CseI GACGC 1 cut(s) 522
CsiI ACCWGGT 2 cut(s) 477, 720
Csp6I GTAC 4 cut(s) 569, 610, 645, 1380
CspCI CAANNNNNGTGG 2 cut(s) 276, 311
CviQI GTAC 4 cut(s) 569, 610, 645, 1380
DdeI CTNAG 7 cut(s) 300, 660, 1127, 1167, 1209, 1215, 1295
DpnI GATC 3 cut(s) 945, 1117, 1125
DpnII GATC 3 cut(s) 943, 1115, 1123
DraIII CACNNNGTG 1 cut(s) 577
EaeI YGGCCR 1 cut(s) 513
Eam1104I CTCTTC 2 cut(s) 493, 633
EarI CTCTTC 2 cut(s) 493, 633
Ecl136II GAGCTC 1 cut(s) 244
Eco130I CCWWGG 1 cut(s) 1222
Eco24I GRGCYC 1 cut(s) 246
Eco47I GGWCC 3 cut(s) 491, 718, 1349
Eco53kI GAGCTC 1 cut(s) 244
Eco57I CTGAAG 2 cut(s) 714, 1161
Eco88I CYCGRG 1 cut(s) 209
EcoICRI GAGCTC 1 cut(s) 244
EcoO109I RGGNCCY 2 cut(s) 616, 1349
EcoRII CCWGG 6 cut(s) 463, 477, 493, 612, 720, 1111
EcoT14I CCWWGG 1 cut(s) 1222
EcoT38I GRGCYC 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 1222
FaqI GGGAC 1 cut(s) 1415
FbaI TGATCA 1 cut(s) 943
Fnu4HI GCNGC 2 cut(s) 461, 907
FokI GGATG 1 cut(s) 842
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 2 cut(s) 461, 907
FspBI CTAG 2 cut(s) 488, 1103
GluI GCNGC 2 cut(s) 461, 907
GsaI CCCAGC 1 cut(s) 339
GsuI CTGGAG 1 cut(s) 590
HaeIII GGCC 5 cut(s) 195, 285, 515, 617, 1200
HapII CCGG 3 cut(s) 48, 192, 369
HgaI GACGC 1 cut(s) 522
HincII GTYRAC 2 cut(s) 978, 1096
HindII GTYRAC 2 cut(s) 978, 1096
HindIII AAGCTT 2 cut(s) 938, 1173
HinfI GANTC 6 cut(s) 136, 236, 557, 842, 979, 1289
HpaII CCGG 3 cut(s) 48, 192, 369
HphI GGTGA 3 cut(s) 376, 386, 1340
Hpy166II GTNNAC 4 cut(s) 571, 978, 1096, 1408
Hpy188I TCNGA 9 cut(s) 157, 235, 241, 795, 1009, 1044, 1060, 1080, 1247
Hpy188III TCNNGA 4 cut(s) 732, 1103, 1179, 1352
Hpy8I GTNNAC 4 cut(s) 571, 978, 1096, 1408
Hpy99I CGWCG 2 cut(s) 42, 538
HpyAV CCTTC 4 cut(s) 530, 738, 1319, 1348
HpyCH4III ACNGT 3 cut(s) 353, 673, 1064
HpyCH4V TGCA 9 cut(s) 201, 565, 585, 593, 836, 909, 965, 1069, 1272
HpyF10VI GCNNNNNNNGC 4 cut(s) 250, 457, 656, 1172
HpyF3I CTNAG 7 cut(s) 300, 660, 1127, 1167, 1209, 1215, 1295
KpnI GGTACC 1 cut(s) 1383
Ksp22I TGATCA 1 cut(s) 943
KspI CCGCGG 1 cut(s) 280
Kzo9I GATC 3 cut(s) 943, 1115, 1123
LmnI GCTCC 5 cut(s) 194, 365, 448, 609, 1339
Lsp1109I GCAGC 2 cut(s) 472, 893
LweI GCATC 3 cut(s) 273, 760, 974
MabI ACCWGGT 2 cut(s) 477, 720
MaeI CTAG 2 cut(s) 488, 1103
MalI GATC 3 cut(s) 945, 1117, 1125
MbiI CCGCTC 1 cut(s) 189
MboI GATC 3 cut(s) 943, 1115, 1123
MflI RGATCY 1 cut(s) 1115
MhlI GDGCHC 3 cut(s) 55, 246, 1024
MluCI AATT 7 cut(s) 788, 999, 1029, 1074, 1088, 1240, 1283
MlyI GAGTC 3 cut(s) 130, 230, 973
MmeI TCCRAC 2 cut(s) 258, 1300
MroXI GAANNNNTTC 2 cut(s) 1003, 1362
MseI TTAA 1 cut(s) 543
MslI CAYNNNNRTG 2 cut(s) 219, 1373
MspA1I CMGCKG 1 cut(s) 279
MspI CCGG 3 cut(s) 48, 192, 369
MspR9I CCNGG 6 cut(s) 465, 479, 495, 614, 722, 1113
Mva1269I GAATGC 1 cut(s) 1159
MvaI CCWGG 6 cut(s) 465, 479, 495, 614, 722, 1113
MvnI CGCG 2 cut(s) 279, 992
MwoI GCNNNNNNNGC 4 cut(s) 250, 457, 656, 1172
NdeII GATC 3 cut(s) 943, 1115, 1123
NlaIV GGNNCC 6 cut(s) 52, 367, 726, 1335, 1350, 1381
NspI RCATGY 2 cut(s) 569, 710
PaeI GCATGC 1 cut(s) 710
PctI GAATGC 1 cut(s) 1159
PdmI GAANNNNTTC 2 cut(s) 1003, 1362
PfeI GAWTC 3 cut(s) 557, 842, 1289
PfoI TCCNGGA 2 cut(s) 493, 1111
PkrI GCNGC 2 cut(s) 462, 908
PleI GAGTC 3 cut(s) 130, 230, 973
PpsI GAGTC 3 cut(s) 130, 230, 973
PpuMI RGGWCCY 1 cut(s) 1349
Psp124BI GAGCTC 1 cut(s) 246
Psp5II RGGWCCY 1 cut(s) 1349
Psp6I CCWGG 6 cut(s) 463, 477, 493, 612, 720, 1111
PspFI CCCAGC 1 cut(s) 335
PspGI CCWGG 6 cut(s) 463, 477, 493, 612, 720, 1111
PspN4I GGNNCC 6 cut(s) 52, 367, 726, 1335, 1350, 1381
PspPI GGNCC 6 cut(s) 284, 491, 616, 718, 1199, 1349
PspPPI RGGWCCY 1 cut(s) 1349
PstI CTGCAG 1 cut(s) 1071
PstNI CAGNNNCTG 2 cut(s) 619, 1118
PsuI RGATCY 1 cut(s) 1115
RsaI GTAC 4 cut(s) 570, 611, 646, 1381
RsaNI GTAC 4 cut(s) 569, 610, 645, 1380
RseI CAYNNNNRTG 2 cut(s) 219, 1373
SacI GAGCTC 1 cut(s) 246
SacII CCGCGG 1 cut(s) 280
SaqAI TTAA 1 cut(s) 543
SatI GCNGC 2 cut(s) 461, 907
Sau3AI GATC 3 cut(s) 943, 1115, 1123
Sau96I GGNCC 6 cut(s) 284, 491, 616, 718, 1199, 1349
SchI GAGTC 3 cut(s) 130, 230, 973
ScrFI CCNGG 6 cut(s) 465, 479, 495, 614, 722, 1113
SduI GDGCHC 3 cut(s) 55, 246, 1024
SexAI ACCWGGT 2 cut(s) 477, 720
SfaNI GCATC 3 cut(s) 273, 760, 974
SfcI CTRYAG 1 cut(s) 1067
Sfr303I CCGCGG 1 cut(s) 280
SgrBI CCGCGG 1 cut(s) 280
SinI GGWCC 3 cut(s) 491, 718, 1349
SmiMI CAYNNNNRTG 2 cut(s) 219, 1373
SphI GCATGC 1 cut(s) 710
Sse9I AATT 7 cut(s) 788, 999, 1029, 1074, 1088, 1240, 1283
SsiI CCGC 4 cut(s) 187, 277, 279, 992
SspMI CTAG 2 cut(s) 488, 1103
SstI GAGCTC 1 cut(s) 246
StyD4I CCNGG 6 cut(s) 463, 477, 493, 612, 720, 1111
StyI CCWWGG 1 cut(s) 1222
TaaI ACNGT 3 cut(s) 353, 673, 1064
TaqI TCGA 2 cut(s) 183, 536
TasI AATT 7 cut(s) 788, 999, 1029, 1074, 1088, 1240, 1283
TatI WGTACW 1 cut(s) 568
TfiI GAWTC 3 cut(s) 557, 842, 1289
Tru1I TTAA 1 cut(s) 543
Tru9I TTAA 1 cut(s) 543
TscAI CASTG 2 cut(s) 559, 1135
TseI GCWGC 2 cut(s) 460, 906
TspDTI ATGAA 6 cut(s) 237, 362, 488, 648, 773, 1184
TspGWI ACGGA 2 cut(s) 842, 1289
TspRI CASTG 2 cut(s) 559, 1135
VpaK11BI GGWCC 3 cut(s) 491, 718, 1349
XapI RAATTY 2 cut(s) 1088, 1240
XbaI TCTAGA 1 cut(s) 1102
XceI RCATGY 2 cut(s) 569, 710
XmnI GAANNNNTTC 2 cut(s) 1003, 1362
XspI CTAG 2 cut(s) 488, 1103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.