Rroxscaffold_2G00082350

Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH ubiquinone oxidoreductase complex (complex I)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005361
Physical Location & Seq
Reverse (-)
5211805 .. 5214838
3034 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00082350.1

Sequence Viewer

Length: 1443 bp
ATGTTGAGACGGCTACTCCTACAAGCCTCCACTACTCGTCGCCTTGCCGGTGCCCACTTCACTCCACCATCTTCACCTCCTTTGCTTCGTTATCGTCCACTTTCCTCTTCTTCTTCTTCTTCAACCCAAATCCCAGAGACTCATTTGGAGGACAACCCTGAGCAACCCTCTGCCACCATCTCCATCGACCGCTCCGGCCTTTGCAATCCCCCCGAGCATTCCCATGAACCTTGTTCGGACTCAGAGCTCGTCAAGCACCTCAAAGGCATCATCAAGTTCCGCGGTGGCCCAATCTCGGTGGCTGAGTATATGGAGGAGGTTTTGACGAACCCGAAAGCTGGGTTCTACATGAACCGTGATGTGTTTGGAGCCGGAGGTGATTTTATCACCTCTCCAGAAGTGAGCCAGATGTTTGGGGAGATGGTTGGTGTGTGGGCGATGTCTCTTTGGGAGCAGATGGGGCAGCCAGGAAAAATGAACCTAGTAGAGCTAGGTCCAGGAAGAGGAACTCTCATGGCCGACCTTCTTCGGGGTGCGTCCAAGTTTAAGAACTTCACTGAATCATTGCATGTACACATGGTGGAGTGCAGTCCTGCATTACAGAAGCTCCAGCACCAGGCCCTGAAATGTGTAGATGAAGAAGAGGGTACGGCTGACACGGATGAGAAAAGGACTGTCAGCACTTTGGCGAAGGTTCCTGTATCATGGCATGCCACATTGGACCAGGTTCCTTCAGGATTGCCATCTATTATCATCGCCCATGAGTTTTATGATGCTTTACCAGTTCATCAATTTCAGAGGGCTTCTCGTGGCTGGTGTGAGAAAATGGTGGATGTTGCAGAAGATTCAAAGTTCCGTTTTGTTCTTTCTTCACAGCCTACACCAGCAACGCTTTATCTGGCAAAACGCTGCAAATGGGCTGGAATGGAAGCAATAGCGAAGCTTGATCATGTTGAGGTTTGCCCTGCATCAATGGAGTTGACTCAAAGTATTGCTGATAGAATTGCTTCTGATGGGGGTGGTGCTCTTGTAATTGATTATGGTCAGAATGGAGTAGTCTCTGACAGTCTGCAGGCAATTCGGAAACATAAGTTTGTTGACATTCTAGACGATCCAGGATCAGCTGATCTCAGTGCCTATGTTGATTTTGCTTCCATCAGGCATTCTGCTGAGGAAGCTTCAGGAGATGTGTCTGTTCATGGCCCTATTACTCAGTCTCAGTTCCTTGGCTCTCTTGGGATAAATTTCCGAGTGGAAGCATTATTACAGAACTGCACGGAGGAACAATTTGAATCTCTCAGGTCAGGGTATTGGCAACTGGTTGGAGAAGGAGAGGCTCCCTTCTGGGAGGGTCCTGATGAAAAAGTTCCCGTCGGAATGGGAACCCGTTATTTGGTAATGGCTATTGTGAACAAGAAGCAAGGTGTTCCAGTTCCATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
Methyltransf_28

Protein Analysis

480

Amino Acids

52.56

Weight (kDa)

5.37

Isoelectric Point (pI)

50.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_28 PF02636 141 - 402 2.4e-65 Putative S-adenosyl-L-methionine-dependent methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 50
AccBSI CCGCTC 1 cut(s) 192
AccII CGCG 1 cut(s) 282
AciI CCGC 3 cut(s) 190, 280, 282
AclWI GGATC 2 cut(s) 1106, 1126
AcoI YGGCCR 1 cut(s) 516
AcsI RAATTY 1 cut(s) 1243
AcuI CTGAAG 2 cut(s) 717, 1164
AdeI CACNNNGTG 1 cut(s) 580
AfaI GTAC 2 cut(s) 573, 649
AfiI CCNNNNNNNGG 6 cut(s) 295, 338, 503, 529, 616, 1393
AgsI TTSAA 3 cut(s) 123, 849, 1292
AjnI CCWGG 5 cut(s) 466, 496, 615, 723, 1114
AluBI AGCT 7 cut(s) 247, 338, 490, 607, 943, 1124, 1178
AluI AGCT 7 cut(s) 247, 338, 490, 607, 943, 1124, 1178
Alw21I GWGCWC 2 cut(s) 249, 1027
Alw26I GTCTC 4 cut(s) 131, 447, 1063, 1221
AlwI GGATC 2 cut(s) 1106, 1126
AlwNI CAGNNNCTG 1 cut(s) 622
Ama87I CYCGRG 1 cut(s) 212
AoxI GGCC 5 cut(s) 196, 286, 516, 618, 1201
ApeKI GCWGC 2 cut(s) 463, 909
ApoI RAATTY 1 cut(s) 1243
Asp700I GAANNNNTTC 2 cut(s) 1006, 1365
AspS9I GGNCC 6 cut(s) 287, 494, 619, 721, 1202, 1352
AsuHPI GGTGA 3 cut(s) 66, 379, 389
AvaI CYCGRG 1 cut(s) 212
AvaII GGWCC 3 cut(s) 494, 721, 1352
BaeGI GKGCMC 1 cut(s) 55
BanI GGYRCC 1 cut(s) 50
BanII GRGCYC 1 cut(s) 249
BarI GAAGNNNNNNTAC 2 cut(s) 1248, 1280
BauI CACGAG 1 cut(s) 807
Bbv12I GWGCWC 2 cut(s) 249, 1027
BbvCI CCTCAGC 1 cut(s) 1170
BbvI GCAGC 2 cut(s) 475, 896
BccI CCATC 8 cut(s) 76, 185, 191, 415, 451, 751, 1007, 1163
BceAI ACGGC 2 cut(s) 26, 666
BcgI CGANNNNNNTGC 2 cut(s) 1061, 1095
BciT130I CCWGG 5 cut(s) 468, 498, 617, 725, 1116
BclI TGATCA 1 cut(s) 946
BcoDI GTCTC 4 cut(s) 131, 447, 1063, 1221
BfaI CTAG 3 cut(s) 482, 491, 1106
BfmI CTRYAG 1 cut(s) 1070
BisI GCNGC 2 cut(s) 464, 910
BlsI GCNGC 2 cut(s) 465, 911
Bme1390I CCNGG 5 cut(s) 468, 498, 617, 725, 1116
Bme18I GGWCC 3 cut(s) 494, 721, 1352
BmeT110I CYCGRG 1 cut(s) 212
BmgT120I GGNCC 6 cut(s) 287, 494, 619, 721, 1202, 1352
BmiI GGNNCC 7 cut(s) 52, 370, 696, 729, 1338, 1353, 1384
BmrFI CCNGG 5 cut(s) 468, 498, 617, 725, 1116
BmsI GCATC 3 cut(s) 276, 763, 977
BplI GAGNNNNNCTC 6 cut(s) 152, 184, 495, 527, 790, 822
BpmI CTGGAG 2 cut(s) 378, 593
Bpu10I CCTNAGC 2 cut(s) 159, 1170
BsaBI GATNNNNATC 1 cut(s) 742
BsaJI CCNNGG 2 cut(s) 280, 1225
BsaXI ACNNNNNCTCC 3 cut(s) 30, 591, 621
Bsc4I CCNNNNNNNGG 6 cut(s) 295, 338, 503, 529, 616, 1393
Bse118I RCCGGY 1 cut(s) 47
Bse1I ACTGG 3 cut(s) 782, 1323, 1430
Bse3DI GCAATG 1 cut(s) 563
Bse8I GATNNNNATC 1 cut(s) 742
BseBI CCWGG 5 cut(s) 468, 498, 617, 725, 1116
BseDI CCNNGG 2 cut(s) 280, 1225
BseGI GGATG 2 cut(s) 667, 838
BseJI GATNNNNATC 1 cut(s) 742
BseLI CCNNNNNNNGG 6 cut(s) 295, 338, 503, 529, 616, 1393
BseMI GCAATG 1 cut(s) 563
BseMII CTCAG 8 cut(s) 150, 255, 294, 1144, 1161, 1226, 1232, 1312
BseNI ACTGG 3 cut(s) 782, 1323, 1430
BseRI GAGGAG 1 cut(s) 329
BseSI GKGCMC 1 cut(s) 55
BseXI GCAGC 2 cut(s) 475, 896
BseYI CCCAGC 1 cut(s) 338
BsgI GTGCAG 2 cut(s) 607, 1258
Bsh1236I CGCG 1 cut(s) 282
Bsh1285I CGRYCG 1 cut(s) 190
BshFI GGCC 5 cut(s) 198, 288, 518, 620, 1203
BshNI GGYRCC 1 cut(s) 50
BsiEI CGRYCG 1 cut(s) 190
BsiHKAI GWGCWC 2 cut(s) 249, 1027
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 3 cut(s) 48, 195, 372
BslI CCNNNNNNNGG 6 cut(s) 295, 338, 503, 529, 616, 1393
BsmAI GTCTC 4 cut(s) 131, 447, 1063, 1221
BsmI GAATGC 2 cut(s) 217, 1162
BsnI GGCC 5 cut(s) 198, 288, 518, 620, 1203
BsoBI CYCGRG 1 cut(s) 212
Bsp1286I GDGCHC 3 cut(s) 55, 249, 1027
Bsp1407I TGTACA 1 cut(s) 571
Bsp143I GATC 4 cut(s) 946, 1111, 1118, 1126
BspACI CCGC 3 cut(s) 190, 280, 282
BspANI GGCC 5 cut(s) 198, 288, 518, 620, 1203
BspCNI CTCAG 8 cut(s) 151, 254, 295, 1143, 1162, 1225, 1231, 1311
BspFNI CGCG 1 cut(s) 282
BspLI GGNNCC 7 cut(s) 52, 370, 696, 729, 1338, 1353, 1384
BspMAI CTGCAG 1 cut(s) 1074
BspPI GGATC 2 cut(s) 1106, 1126
BspT107I GGYRCC 1 cut(s) 50
BsrBI CCGCTC 1 cut(s) 192
BsrDI GCAATG 1 cut(s) 563
BsrFI RCCGGY 1 cut(s) 47
BsrGI TGTACA 1 cut(s) 571
BsrI ACTGG 3 cut(s) 782, 1323, 1430
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 280, 1225
BssMI GATC 4 cut(s) 946, 1111, 1118, 1126
BssSI CACGAG 1 cut(s) 807
BssT1I CCWWGG 1 cut(s) 1225
Bst2BI CACGAG 1 cut(s) 807
Bst2UI CCWGG 5 cut(s) 468, 498, 617, 725, 1116
Bst4CI ACNGT 3 cut(s) 356, 676, 1067
Bst6I CTCTTC 3 cut(s) 112, 496, 636
BstAUI TGTACA 1 cut(s) 571
BstC8I GCNNGC 2 cut(s) 711, 1074
BstDEI CTNAG 8 cut(s) 159, 241, 303, 1130, 1170, 1212, 1218, 1298
BstDSI CCRYGG 1 cut(s) 280
BstF5I GGATG 2 cut(s) 667, 838
BstFNI CGCG 1 cut(s) 282
BstKTI GATC 4 cut(s) 949, 1114, 1121, 1129
BstMAI GTCTC 4 cut(s) 131, 447, 1063, 1221
BstMBI GATC 4 cut(s) 946, 1111, 1118, 1126
BstMCI CGRYCG 1 cut(s) 190
BstMWI GCNNNNNNNGC 3 cut(s) 253, 460, 1175
BstNI CCWGG 5 cut(s) 468, 498, 617, 725, 1116
BstNSI RCATGY 2 cut(s) 572, 713
BstSCI CCNGG 5 cut(s) 466, 496, 615, 723, 1114
BstSFI CTRYAG 1 cut(s) 1070
BstSLI GKGCMC 1 cut(s) 55
BstUI CGCG 1 cut(s) 282
BstV1I GCAGC 2 cut(s) 475, 896
BstXI CCANNNNNNTGG 1 cut(s) 413
BsuRI GGCC 5 cut(s) 198, 288, 518, 620, 1203
BtgI CCRYGG 1 cut(s) 280
BtgZI GCGATG 2 cut(s) 452, 739
BtsCI GGATG 2 cut(s) 667, 838
BtsIMutI CAGTG 2 cut(s) 555, 1138
Cac8I GCNNGC 2 cut(s) 711, 1074
CaiI CAGNNNCTG 1 cut(s) 622
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 6 cut(s) 287, 494, 619, 721, 1202, 1352
Cfr42I CCGCGG 1 cut(s) 283
CseI GACGC 1 cut(s) 525
CsiI ACCWGGT 1 cut(s) 723
Csp6I GTAC 2 cut(s) 572, 648
CspCI CAANNNNNGTGG 2 cut(s) 279, 314
CviQI GTAC 2 cut(s) 572, 648
DdeI CTNAG 8 cut(s) 159, 241, 303, 1130, 1170, 1212, 1218, 1298
DpnI GATC 4 cut(s) 948, 1113, 1120, 1128
DpnII GATC 4 cut(s) 946, 1111, 1118, 1126
DraIII CACNNNGTG 1 cut(s) 580
EaeI YGGCCR 1 cut(s) 516
Eam1104I CTCTTC 3 cut(s) 112, 496, 636
EarI CTCTTC 3 cut(s) 112, 496, 636
Ecl136II GAGCTC 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 1225
Eco24I GRGCYC 1 cut(s) 249
Eco47I GGWCC 3 cut(s) 494, 721, 1352
Eco53kI GAGCTC 1 cut(s) 247
Eco57I CTGAAG 2 cut(s) 717, 1164
Eco88I CYCGRG 1 cut(s) 212
EcoICRI GAGCTC 1 cut(s) 247
EcoO109I RGGNCCY 2 cut(s) 619, 1352
EcoRII CCWGG 5 cut(s) 466, 496, 615, 723, 1114
EcoT14I CCWWGG 1 cut(s) 1225
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 1225
FbaI TGATCA 1 cut(s) 946
Fnu4HI GCNGC 2 cut(s) 464, 910
FokI GGATG 2 cut(s) 674, 845
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 2 cut(s) 464, 910
FspBI CTAG 3 cut(s) 482, 491, 1106
GluI GCNGC 2 cut(s) 464, 910
GsaI CCCAGC 1 cut(s) 342
GsuI CTGGAG 2 cut(s) 378, 593
HaeIII GGCC 5 cut(s) 198, 288, 518, 620, 1203
HapII CCGG 3 cut(s) 48, 195, 372
HgaI GACGC 1 cut(s) 525
HincII GTYRAC 2 cut(s) 981, 1099
HindII GTYRAC 2 cut(s) 981, 1099
HindIII AAGCTT 2 cut(s) 941, 1176
HinfI GANTC 6 cut(s) 139, 239, 560, 845, 982, 1292
HpaII CCGG 3 cut(s) 48, 195, 372
HphI GGTGA 3 cut(s) 66, 379, 389
Hpy166II GTNNAC 5 cut(s) 98, 574, 981, 1099, 1411
Hpy188I TCNGA 9 cut(s) 238, 244, 798, 1012, 1047, 1063, 1083, 1250, 1376
Hpy188III TCNNGA 5 cut(s) 395, 735, 1106, 1182, 1355
Hpy8I GTNNAC 5 cut(s) 98, 574, 981, 1099, 1411
Hpy99I CGWCG 2 cut(s) 42, 1376
HpyAV CCTTC 5 cut(s) 533, 685, 741, 1322, 1351
HpyCH4III ACNGT 3 cut(s) 356, 676, 1067
HpyCH4V TGCA 9 cut(s) 204, 568, 588, 596, 839, 912, 968, 1072, 1275
HpyF10VI GCNNNNNNNGC 3 cut(s) 253, 460, 1175
HpyF3I CTNAG 8 cut(s) 159, 241, 303, 1130, 1170, 1212, 1218, 1298
Ksp22I TGATCA 1 cut(s) 946
KspI CCGCGG 1 cut(s) 283
Kzo9I GATC 4 cut(s) 946, 1111, 1118, 1126
LmnI GCTCC 5 cut(s) 197, 368, 451, 612, 1342
Lsp1109I GCAGC 2 cut(s) 475, 896
LweI GCATC 3 cut(s) 276, 763, 977
MabI ACCWGGT 1 cut(s) 723
MaeI CTAG 3 cut(s) 482, 491, 1106
MalI GATC 4 cut(s) 948, 1113, 1120, 1128
MbiI CCGCTC 1 cut(s) 192
MboI GATC 4 cut(s) 946, 1111, 1118, 1126
MhlI GDGCHC 3 cut(s) 55, 249, 1027
MluCI AATT 6 cut(s) 791, 1002, 1032, 1077, 1243, 1286
MlyI GAGTC 3 cut(s) 133, 233, 976
MmeI TCCRAC 2 cut(s) 1303, 1354
MroXI GAANNNNTTC 2 cut(s) 1006, 1365
MseI TTAA 1 cut(s) 546
MslI CAYNNNNRTG 1 cut(s) 222
MspA1I CMGCKG 2 cut(s) 282, 1124
MspI CCGG 3 cut(s) 48, 195, 372
MspR9I CCNGG 5 cut(s) 468, 498, 617, 725, 1116
Mva1269I GAATGC 2 cut(s) 217, 1162
MvaI CCWGG 5 cut(s) 468, 498, 617, 725, 1116
MvnI CGCG 1 cut(s) 282
MwoI GCNNNNNNNGC 3 cut(s) 253, 460, 1175
NdeII GATC 4 cut(s) 946, 1111, 1118, 1126
NlaIV GGNNCC 7 cut(s) 52, 370, 696, 729, 1338, 1353, 1384
NspI RCATGY 2 cut(s) 572, 713
PaeI GCATGC 1 cut(s) 713
PctI GAATGC 2 cut(s) 217, 1162
PdmI GAANNNNTTC 2 cut(s) 1006, 1365
PfeI GAWTC 3 cut(s) 560, 845, 1292
PfoI TCCNGGA 2 cut(s) 496, 1114
PkrI GCNGC 2 cut(s) 465, 911
PleI GAGTC 3 cut(s) 133, 233, 976
PpsI GAGTC 3 cut(s) 133, 233, 976
PpuMI RGGWCCY 1 cut(s) 1352
Psp124BI GAGCTC 1 cut(s) 249
Psp5II RGGWCCY 1 cut(s) 1352
Psp6I CCWGG 5 cut(s) 466, 496, 615, 723, 1114
PspFI CCCAGC 1 cut(s) 338
PspGI CCWGG 5 cut(s) 466, 496, 615, 723, 1114
PspN4I GGNNCC 7 cut(s) 52, 370, 696, 729, 1338, 1353, 1384
PspPI GGNCC 6 cut(s) 287, 494, 619, 721, 1202, 1352
PspPPI RGGWCCY 1 cut(s) 1352
PstI CTGCAG 1 cut(s) 1074
PstNI CAGNNNCTG 1 cut(s) 622
PvuII CAGCTG 1 cut(s) 1124
RsaI GTAC 2 cut(s) 573, 649
RsaNI GTAC 2 cut(s) 572, 648
RseI CAYNNNNRTG 1 cut(s) 222
SacI GAGCTC 1 cut(s) 249
SacII CCGCGG 1 cut(s) 283
SaqAI TTAA 1 cut(s) 546
SatI GCNGC 2 cut(s) 464, 910
Sau3AI GATC 4 cut(s) 946, 1111, 1118, 1126
Sau96I GGNCC 6 cut(s) 287, 494, 619, 721, 1202, 1352
SchI GAGTC 3 cut(s) 133, 233, 976
ScrFI CCNGG 5 cut(s) 468, 498, 617, 725, 1116
SduI GDGCHC 3 cut(s) 55, 249, 1027
SexAI ACCWGGT 1 cut(s) 723
SfaNI GCATC 3 cut(s) 276, 763, 977
SfcI CTRYAG 1 cut(s) 1070
Sfr303I CCGCGG 1 cut(s) 283
SgrBI CCGCGG 1 cut(s) 283
SinI GGWCC 3 cut(s) 494, 721, 1352
SmiMI CAYNNNNRTG 1 cut(s) 222
SphI GCATGC 1 cut(s) 713
Sse9I AATT 6 cut(s) 791, 1002, 1032, 1077, 1243, 1286
SsiI CCGC 3 cut(s) 190, 280, 282
SspMI CTAG 3 cut(s) 482, 491, 1106
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 5 cut(s) 466, 496, 615, 723, 1114
StyI CCWWGG 1 cut(s) 1225
TaaI ACNGT 3 cut(s) 356, 676, 1067
TaqI TCGA 1 cut(s) 186
TasI AATT 6 cut(s) 791, 1002, 1032, 1077, 1243, 1286
TatI WGTACW 1 cut(s) 571
TfiI GAWTC 3 cut(s) 560, 845, 1292
Tru1I TTAA 1 cut(s) 546
Tru9I TTAA 1 cut(s) 546
TscAI CASTG 2 cut(s) 562, 1138
TseI GCWGC 2 cut(s) 463, 909
TspDTI ATGAA 7 cut(s) 240, 365, 491, 651, 776, 1187, 1374
TspGWI ACGGA 3 cut(s) 674, 845, 1292
TspRI CASTG 2 cut(s) 562, 1138
VpaK11BI GGWCC 3 cut(s) 494, 721, 1352
XapI RAATTY 1 cut(s) 1243
XbaI TCTAGA 1 cut(s) 1105
XceI RCATGY 2 cut(s) 572, 713
XmnI GAANNNNTTC 2 cut(s) 1006, 1365
XspI CTAG 3 cut(s) 482, 491, 1106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.