Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0010808

Physical Location & Seq

Genomic Coordinates Forward (+)

3600373 .. 3603802

Gene Structure 3430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3360 bp

ATGGGTTTTTCTCCGTCTTCCTCTTCGGTCATCAAAGGACATTTTTTTCGCAGACCCTCTTGTCCAGTGTTTGTTCTGAAGCTTGTTTTGCTCTTGTGGGTGTTCTGTAGTTCCCAGAACTGTGCTGTTCTTGCTGATACTGACGCATCGGTGCTTCTGGAGCTAAAAAACTCTGTCTTGGATCCTTCAGGCTTGCTTTCTGGCTGGAACGGTCGGCTCAGTTCTGGTCATTGCTCATGGACCGGCGTCTTCTGCAACTCAAATTCTCGAGTGGTTTCGCTCAACGTTACTGGGAATGGCGGAGAAACCGAAGGTAGATCGAAAACTATTGCGTGCTCAGATTTTTCTCAGTTGCCGCTTTATGGATTCGGAATCAGAAGGAGCTGTGAGGGTAGTAGAGGAAGATTGGCTGGGAAGCTCCCCTCTGTAATTGGTAAGCTCACTGAGCTTAGGGTCTTGTCCCTCCCCTTCAATGGTTTTGATGGTGAAATTCCTAGTGAAGTTTTGGGCTTGGAAAACTTGGAGGTTCTTGATCTTGAGGGAAACTGGGTAACTGGGTCGCTGCCCTTTCAGCTTAATCCAAATTTGAGGGTTCTTAATCTAGGGTTTAATATGATTAAAGGTGAGATACCGACCTCCTGGTCAAATTATATGAGCCTAGAGATCTTGAGTTTAGCTGGGAATCTCATAAACGGAACTGTTCCAGGTTTCATTGGTAGGTTAAAGGCGGTGTACTTGTCATACAATTCACTTAGTGGAGATGTTCCCAGCAAGATTGGAGCAAATTGTGGGAAGCTTGAGCATCTTGATTTGTCGGGTAATTTCTTGGTTCATAACATTCCAAGCAGTTTGGGAAATTGCAGCCAGTTGAGGACGTTGTTGCTGTATTCAAATATGTTTGAACAGGGTATTCCAGCTGAACTCGGACGGCTTCAAGCTCTGGAAGTGTTGGATGTGTCGAGGAATACCCTGAGTAGTTCATTGCCACGTGAGCTGGGGAATTGTTCTCAGTTGTCTGTCCTTGTGCTGTCATCTATGTTTAATCCACTTCCACGAGGTAACCATACCGTAGTGGACTCTTTGTTGGAGCAGTTGAATGCTATGAATGACGACTTCAATTACTTTCAAGGTACAATGCCTGTAGAAATTACAACCCTTCCGAAGCTAAGGATCTTGTGGGCACCAAGGGCAAGTATTGAGGGCACTTTCCCAAGCAATTGGGGTGGTTGTGAGAAGCTTCAGTTTCTTGACGTGAGCTCTAACATGCTTAGTGGGGATCTTGTTCAGGATCTTCATGTTCCTTGTATGGTTATGTTTGATATCAGCGGAAACATCTTGTCAGGTTCAATACCTGAATATGTCAACAGAACTTGTGCTTCTCCTTTTGGAGATTTTTCTTTCAAGTCTGAGGATCCATCCTCAACCTATGTTGCATTTTTCACTTCTAAATCCCAAGTTGGAAATTCATTGCAAATGCATGGGGAGGGTGACAGTCTTATGGTAGTACACAACTTCGCGCACAATAATTTTACCGGCGCTTTGCAGACGCTGCCTATTGCACCTGAAAGACTAGGGAAACAAACTTTTTATGCATTCTTTGCTGGAGAAAACAAGATTTCTGGAGAATTTCCAGGTAAATTATTTGGCAAGTGTGAGGGATTGGAGTGGCTGATTGTTAATGTAAGCCACAACAAGTTAGAAGGTCAGATTCCTGCTGAAGTTGGCACTATGTGCAAATCTCTTAAAGGTTTAGATGCATCTCGGAATCAGATTACTGGTCCAATTCCCTCTACCATCGGGAAACTGTCTCTTGTCGGCCTTAATTTGAGTTGGAACATGTTGAGGGGTGAAATCCCGACCAGTCTTGGCCAGATAAGTAATCTGACGTATCTTTCCTTATCTGGCAATCTCCTTACAGGTGTCATTCCGTCTAGTTTGGGGCAGCTGACCTCTTTAGAAGTGCTTGAACTTTCTTCAAACTATCTGACTGGTGAGATACCGAAAGATCTTGTGAATCTGCGGAACCTGACTGTTCTTCTGCTCGACAAGAATAATATTTCTGGTCAGATTCCATCTGGATTGGCAAATGTGACCACACTGTCATCTTTCAATGTGTCTTTCAATAACATCACAGGTTCACTGCCTGCGAATAATAACCTGATGAAATGCAATGCTGCTATTGGAAACCCAAATCTAGACTCTTGCCCCATGTTTTCTCTGGCACAGCCAGCTCCGGATTCTCAAGGACGAGTTGGTGATTCACAACCTTTTGCTGCTTCACCAGTGGGAGGTCCAGCTCAGAAGACTGGGAACGGTTTCAATTCAATTGAAATAGCATCCATTACATCTGCATCGGCCATAGTTTCGGTGCTTATTGCTCTTGTTATTCTGTTCCTGTATACACGGAAATGGAATCCAAAGTCTGGAACTCAAGGTTCTACCAGGAAGGAAGTTACAATTTTCACGAACATTGGGGTTCCATTGACCTTTGAGAATGTTGTGGGAGCCACAGGAGGTTTCAATGCTAGTAACTGTATTGGGAATGGAGGTTTTGGAGCTACCTACAAGGCAGAGATATCACCTGGAATCGTGGTGGCAATTAAACGGCTTTCAGTTGGAAGGTTCCAAGGAGTTCAACAATTTCATGCAGAAATCAAAACCCTTGGAAGGCTTCGCCATCCAAATCTTGTCACTTTGCTTGGTTATCATGCCAGTGATACAGAGATGTTTCTAATTTACAACTACTTGGCGGGTGGTAATTTGGAAAAGTTTATTCAGGAAAGGTCAACAAGGGCTGTGGATTGGAGGGTACTTCACAAGATTGCTTTGGACATAGCCCGTGCACTTGCCTACCTACATGATCAGTGCGTACCACGTGTCCTTCATCGTGACGTCAAGCCGAGCAATATTTTGTTGGATGATGATTTTAATGCGTATCTCTCAGACTTTGGTTTGGCCAGACTTCTGGGAACTTCGGAGACCCATGCTACTACTGGCGTTGCTGGAACTTTTGGATATGTTGCCCCAGAATATGCAATGACTTGCCGTGTTTCAGATAAGGCTGATGTATATAGTTATGGCGTTGTGCTTCTGGAGTTACTCTCTGACAAGAAGGCACTGGATCCCTCTTTCTCTTCATATGGAAATGGATTCAACATCGTTCAATGGTCATGTATGCTTCTTCGGCAAGGCCGTGCAAAGGAATTCTTCACTGCTGGGTTATGGGATGCAGGCCCTCATGATGATTTAGTAGAAGTTCTGCACTTGGCAGTAGTGTGCACGGTTGACTCTCTCTCAACCAGGCCTACAATGAGGCAAGTTGTACGACGGCTTAAGCAACTTCAGCCTCCATCCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0001101 GO:0003002 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0006725 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009698 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009808 GO:0009846 GO:0009856 GO:0009880 GO:0009888 GO:0009908 GO:0009942 GO:0009945 GO:0009956 GO:0009987 GO:0010035 GO:0010073 GO:0010152 GO:0010154 GO:0016020 GO:0016043 GO:0019748 GO:0021700 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0042221 GO:0043933 GO:0044085 GO:0044237 GO:0044464 GO:0044706 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048508 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051259 GO:0051260 GO:0051704 GO:0061458 GO:0065003 GO:0071704 GO:0071840 GO:0071944 GO:0090567 GO:0099402 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase

Protein Analysis

1120

Amino Acids

120.92

Weight (kDa)

6.46

Isoelectric Point (pI)

37.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	46 - 86	1.1e-10	Leucine rich repeat N-terminal domain
LRR_14	PF23598	269 - 458	1e-09	Leucine-rich repeat region
LRR_14	PF23598	621 - 703	3.1e-08	Leucine-rich repeat region
LRR_8	PF13855	626 - 686	2e-09	Leucine rich repeat
Pkinase	PF00069	842 - 1041	9.9e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	843 - 1111	2.4e-39	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02130 AT3G02130
fragaria_vesca	FvH4_6g46830
malus_domestica	MD09G1067100.v1.1 MD17G1060000.v1.1 MD17G1060100.v1.1
prunus_persica	Prupe.3G254600_v2.0.a1
pyrus_communis	pycom111g05640 pycom17g05970 pycom17g05980
rosa_chinensis	RchiOBHm_Chr2g0165821
rosa_laevigata	RLG00000021558
rosa_multiflora	Rmu_sc0003227.1_g000004
rosa_roxburghii	Rroxscaffold_2G00085480
rosa_rugosa	Rorug02G0518000
rosa_samantha	Rh2AG583700 Rh2BG595700 Rh2CG566600 Rh2DG605500
rosa_wichuraiana	Rw2G048670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	60, 640, 2098
AatII	GACGTC	1 cut(s)	2895
AccB1I	GGYRCC	1 cut(s)	1180
AccB7I	CCANNNNNTGG	1 cut(s)	2423
AccI	GTMKAC	1 cut(s)	2399
AccII	CGCG	1 cut(s)	1517
AccIII	TCCGGA	1 cut(s)	2233
AciI	CCGC	6 cut(s)	300, 356, 728, 1326, 2020, 2750
AclI	AACGTT	1 cut(s)	285
AclWI	GGATC	9 cut(s)	176, 189, 1178, 1284, 1296, 1406, 1419, 3116, 3129
AcoI	YGGCCR	3 cut(s)	1867, 2355, 2955
AcsI	RAATTY	6 cut(s)	262, 489, 583, 1462, 1625, 3203
AcuI	CTGAAG	5 cut(s)	98, 171, 1223, 1737, 3326
AcvI	CACGTG	2 cut(s)	989, 2876
AcyI	GRCGYC	2 cut(s)	246, 2892
AdeI	CACNNNGTG	2 cut(s)	755, 1731
AfaI	GTAC	6 cut(s)	734, 1132, 1506, 2811, 2871, 3324
AfiI	CCNNNNNNNGG	6 cut(s)	362, 473, 2288, 2423, 2667, 3199
AflII	CTTAAG	1 cut(s)	3332
AflIII	ACRYGT	2 cut(s)	1836, 2875
AjiI	CACGTC	1 cut(s)	1252
AjnI	CCWGG	6 cut(s)	638, 703, 1630, 2441, 2581, 3299
Alw21I	GWGCWC	4 cut(s)	338, 1259, 2845, 3281
Alw26I	GTCTC	2 cut(s)	1812, 2972
Alw44I	GTGCAC	2 cut(s)	2841, 3277
AlwI	GGATC	9 cut(s)	176, 189, 1178, 1284, 1296, 1406, 1419, 3116, 3129
AlwNI	CAGNNNCTG	1 cut(s)	1549
Ama87I	CYCGRG	1 cut(s)	267
Aor13HI	TCCGGA	1 cut(s)	2233
AoxI	GGCC	7 cut(s)	1816, 1867, 2355, 2955, 3190, 3232, 3302
ApaLI	GTGCAC	2 cut(s)	2841, 3277
ApeKI	GCWGC	6 cut(s)	562, 861, 1549, 1942, 2174, 2273
ApoI	RAATTY	6 cut(s)	262, 489, 583, 1462, 1625, 3203
ArsI	GACNNNNNNTTYG	2 cut(s)	30, 62
Asp700I	GAANNNNTTC	1 cut(s)	2315
AspLEI	GCGC	2 cut(s)	1519, 1538
AspS9I	GGNCC	4 cut(s)	240, 1778, 2291, 3233
AsuHPI	GGTGA	8 cut(s)	497, 635, 1499, 1859, 2003, 2267, 2271, 2571
AvaI	CYCGRG	1 cut(s)	267
AvaII	GGWCC	3 cut(s)	240, 1778, 2291
BaeGI	GKGCMC	4 cut(s)	1183, 1205, 2845, 3281
BalI	TGGCCA	2 cut(s)	1869, 2957
BamHI	GGATCC	3 cut(s)	181, 1411, 3121
BanI	GGYRCC	1 cut(s)	1180
BanII	GRGCYC	1 cut(s)	1259
BauI	CACGAG	1 cut(s)	1053
BbrPI	CACGTG	2 cut(s)	989, 2876
BbsI	GAAGAC	3 cut(s)	9, 241, 2309
Bbv12I	GWGCWC	4 cut(s)	338, 1259, 2845, 3281
BbvI	GCAGC	6 cut(s)	549, 873, 1536, 1954, 2161, 2260
BccI	CCATC	6 cut(s)	476, 1423, 1802, 2080, 2685, 3358
BceAI	ACGGC	5 cut(s)	944, 2621, 3030, 3177, 3344
BciT130I	CCWGG	6 cut(s)	640, 705, 1632, 2443, 2583, 3301
BclI	TGATCA	1 cut(s)	2860
BcoDI	GTCTC	2 cut(s)	1812, 2972
BfaI	CTAG	7 cut(s)	495, 602, 659, 1571, 1932, 2195, 2526
BfmI	CTRYAG	2 cut(s)	106, 1140
BfoI	RGCGCY	1 cut(s)	1539
BfrI	CTTAAG	1 cut(s)	3332
BglII	AGATCT	2 cut(s)	663, 2005
BisI	GCNGC	7 cut(s)	356, 563, 862, 1550, 1943, 2175, 2274
BlsI	GCNGC	7 cut(s)	357, 564, 863, 1551, 1944, 2176, 2275
Bme1390I	CCNGG	6 cut(s)	640, 705, 1632, 2443, 2583, 3301
Bme18I	GGWCC	3 cut(s)	240, 1778, 2291
BmeT110I	CYCGRG	1 cut(s)	267
BmgBI	CACGTC	1 cut(s)	1252
BmgT120I	GGNCC	4 cut(s)	240, 1778, 2291, 3233
BmiI	GGNNCC	8 cut(s)	183, 1182, 1413, 2024, 2478, 2506, 2624, 3123
BmrFI	CCNGG	6 cut(s)	640, 705, 1632, 2443, 2583, 3301
BmrI	ACTGGG	4 cut(s)	300, 556, 564, 2316
BmsI	GCATC	7 cut(s)	155, 811, 1744, 1766, 2345, 2360, 3217
BmuI	ACTGGG	4 cut(s)	300, 556, 564, 2316
BoxI	GACNNNNGTC	1 cut(s)	245
BpiI	GAAGAC	3 cut(s)	9, 241, 2309
BplI	GAGNNNNNCTC	2 cut(s)	3086, 3118
BpmI	CTGGAG	4 cut(s)	179, 1623, 1641, 3113
Bpu10I	CCTNAGC	2 cut(s)	449, 1166
BpuEI	CTTGAG	5 cut(s)	557, 688, 818, 2226, 2415
BsaAI	YACGTR	2 cut(s)	989, 2876
BsaHI	GRCGYC	2 cut(s)	246, 2892
BsaI	GGTCTC	1 cut(s)	2972
BsaJI	CCNNGG	3 cut(s)	1184, 2626, 2662
BsaWI	WCCGGW	1 cut(s)	2233
Bsc4I	CCNNNNNNNGG	6 cut(s)	362, 473, 2288, 2423, 2667, 3199
Bse118I	RCCGGY	2 cut(s)	242, 1532
Bse3DI	GCAATG	5 cut(s)	229, 980, 1466, 2176, 3042
BseAI	TCCGGA	1 cut(s)	2233
BseBI	CCWGG	6 cut(s)	640, 705, 1632, 2443, 2583, 3301
BseDI	CCNNGG	3 cut(s)	1184, 2626, 2662
BseGI	GGATG	7 cut(s)	958, 1415, 2336, 2677, 2923, 3232, 3350
BseLI	CCNNNNNNNGG	6 cut(s)	362, 473, 2288, 2423, 2667, 3199
BseMI	GCAATG	5 cut(s)	229, 980, 1466, 2176, 3042
BseMII	CTCAG	9 cut(s)	232, 351, 362, 435, 962, 1022, 1398, 2312, 2955
BseSI	GKGCMC	4 cut(s)	1183, 1205, 2845, 3281
BseXI	GCAGC	6 cut(s)	549, 873, 1536, 1954, 2161, 2260
BseYI	CCCAGC	5 cut(s)	410, 677, 767, 994, 3215
BsgI	GTGCAG	1 cut(s)	3245
Bsh1236I	CGCG	1 cut(s)	1517
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	7 cut(s)	1818, 1869, 2357, 2957, 3192, 3234, 3304
BshNI	GGYRCC	1 cut(s)	1180
BsiEI	CGRYCG	1 cut(s)	214
BsiHKAI	GWGCWC	4 cut(s)	338, 1259, 2845, 3281
BsiHKCI	CYCGRG	1 cut(s)	267
BsiSI	CCGG	3 cut(s)	243, 1533, 2234
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	6 cut(s)	362, 473, 2288, 2423, 2667, 3199
BsmAI	GTCTC	2 cut(s)	1812, 2972
BsmFI	GGGAC	1 cut(s)	445
BsmI	GAATGC	2 cut(s)	1102, 1592
BsnI	GGCC	7 cut(s)	1818, 1869, 2357, 2957, 3192, 3234, 3304
Bso31I	GGTCTC	1 cut(s)	2972
BsoBI	CYCGRG	1 cut(s)	267
Bsp1286I	GDGCHC	6 cut(s)	338, 1183, 1205, 1259, 2845, 3281
Bsp13I	TCCGGA	1 cut(s)	2233
BspACI	CCGC	6 cut(s)	300, 356, 728, 1326, 2020, 2750
BspANI	GGCC	7 cut(s)	1818, 1869, 2357, 2957, 3192, 3234, 3304
BspCNI	CTCAG	9 cut(s)	231, 350, 361, 436, 963, 1021, 1399, 2311, 2954
BspEI	TCCGGA	1 cut(s)	2233
BspFNI	CGCG	1 cut(s)	1517
BspHI	TCATGA	1 cut(s)	3238
BspLI	GGNNCC	8 cut(s)	183, 1182, 1413, 2024, 2478, 2506, 2624, 3123
BspPI	GGATC	9 cut(s)	176, 189, 1178, 1284, 1296, 1406, 1419, 3116, 3129
BspT107I	GGYRCC	1 cut(s)	1180
BspTI	CTTAAG	1 cut(s)	3332
BspTNI	GGTCTC	1 cut(s)	2972
BsrDI	GCAATG	5 cut(s)	229, 980, 1466, 2176, 3042
BsrFI	RCCGGY	2 cut(s)	242, 1532
BssAI	RCCGGY	2 cut(s)	242, 1532
BssECI	CCNNGG	3 cut(s)	1184, 2626, 2662
BssNAI	GTATAC	1 cut(s)	2400
BssNI	GRCGYC	2 cut(s)	246, 2892
BssSI	CACGAG	1 cut(s)	1053
BssT1I	CCWWGG	3 cut(s)	1184, 2626, 2662
Bst1107I	GTATAC	1 cut(s)	2400
Bst2BI	CACGAG	1 cut(s)	1053
Bst2UI	CCWGG	6 cut(s)	640, 705, 1632, 2443, 2583, 3301
Bst6I	CTCTTC	2 cut(s)	28, 3139
BstACI	GRCGYC	2 cut(s)	246, 2892
BstAFI	CTTAAG	1 cut(s)	3332
BstAPI	GCANNNNNTGC	3 cut(s)	1549, 1598, 1731
BstBAI	YACGTR	2 cut(s)	989, 2876
BstC8I	GCNNGC	5 cut(s)	194, 334, 2145, 2229, 3232
BstEII	GGTNACC	1 cut(s)	1058
BstF5I	GGATG	7 cut(s)	958, 1415, 2336, 2677, 2923, 3232, 3350
BstFNI	CGCG	1 cut(s)	1517
BstH2I	RGCGCY	1 cut(s)	1539
BstHHI	GCGC	2 cut(s)	1519, 1538
BstMAI	GTCTC	2 cut(s)	1812, 2972
BstMCI	CGRYCG	1 cut(s)	214
BstNI	CCWGG	6 cut(s)	640, 705, 1632, 2443, 2583, 3301
BstNSI	RCATGY	2 cut(s)	1267, 1840
BstPAI	GACNNNNGTC	1 cut(s)	245
BstPI	GGTNACC	1 cut(s)	1058
BstSCI	CCNGG	6 cut(s)	638, 703, 1630, 2441, 2581, 3299
BstSFI	CTRYAG	2 cut(s)	106, 1140
BstSLI	GKGCMC	4 cut(s)	1183, 1205, 2845, 3281
BstUI	CGCG	1 cut(s)	1517
BstV1I	GCAGC	6 cut(s)	549, 873, 1536, 1954, 2161, 2260
BstV2I	GAAGAC	3 cut(s)	9, 241, 2309
BstX2I	RGATCY	8 cut(s)	181, 663, 1170, 1276, 1288, 1411, 2005, 3121
BstXI	CCANNNNNNTGG	2 cut(s)	1218, 2965
BstYI	RGATCY	8 cut(s)	181, 663, 1170, 1276, 1288, 1411, 2005, 3121
BstZ17I	GTATAC	1 cut(s)	2400
BsuRI	GGCC	7 cut(s)	1818, 1869, 2357, 2957, 3192, 3234, 3304
BtrI	CACGTC	1 cut(s)	1252
BtsCI	GGATG	7 cut(s)	958, 1415, 2336, 2677, 2923, 3232, 3350
BtsI	GCAGTG	2 cut(s)	2138, 3210
BtsIMutI	CAGTG	9 cut(s)	72, 441, 2096, 2138, 2289, 2719, 2870, 3116, 3210
Cac8I	GCNNGC	5 cut(s)	194, 334, 2145, 2229, 3232
CaiI	CAGNNNCTG	1 cut(s)	1549
CciI	TCATGA	1 cut(s)	3238
CfoI	GCGC	2 cut(s)	1519, 1538
Cfr10I	RCCGGY	2 cut(s)	242, 1532
Cfr13I	GGNCC	4 cut(s)	240, 1778, 2291, 3233
CseI	GACGC	3 cut(s)	152, 235, 1555
Csp6I	GTAC	6 cut(s)	733, 1131, 1505, 2810, 2870, 3323
CspCI	CAANNNNNGTGG	4 cut(s)	1204, 1239, 2778, 2813
CviQI	GTAC	6 cut(s)	733, 1131, 1505, 2810, 2870, 3323
DraIII	CACNNNGTG	2 cut(s)	755, 1731
DrdI	GACNNNNNNGTC	3 cut(s)	60, 640, 2098
DseDI	GACNNNNNNGTC	3 cut(s)	60, 640, 2098
EaeI	YGGCCR	3 cut(s)	1867, 2355, 2955
Eam1104I	CTCTTC	2 cut(s)	28, 3139
EarI	CTCTTC	2 cut(s)	28, 3139
EciI	GGCGGA	1 cut(s)	315
Ecl136II	GAGCTC	1 cut(s)	1257
Eco130I	CCWWGG	3 cut(s)	1184, 2626, 2662
Eco147I	AGGCCT	1 cut(s)	3304
Eco24I	GRGCYC	1 cut(s)	1259
Eco31I	GGTCTC	1 cut(s)	2972
Eco32I	GATATC	2 cut(s)	1321, 2577
Eco47I	GGWCC	3 cut(s)	240, 1778, 2291
Eco53kI	GAGCTC	1 cut(s)	1257
Eco57I	CTGAAG	5 cut(s)	98, 171, 1223, 1737, 3326
Eco72I	CACGTG	2 cut(s)	989, 2876
Eco88I	CYCGRG	1 cut(s)	267
Eco91I	GGTNACC	1 cut(s)	1058
EcoICRI	GAGCTC	1 cut(s)	1257
EcoO109I	RGGNCCY	1 cut(s)	3233
EcoO65I	GGTNACC	1 cut(s)	1058
EcoRI	GAATTC	1 cut(s)	3203
EcoRII	CCWGG	6 cut(s)	638, 703, 1630, 2441, 2581, 3299
EcoRV	GATATC	2 cut(s)	1321, 2577
EcoT14I	CCWWGG	3 cut(s)	1184, 2626, 2662
EcoT22I	ATGCAT	3 cut(s)	1479, 1594, 1759
EcoT38I	GRGCYC	1 cut(s)	1259
ErhI	CCWWGG	3 cut(s)	1184, 2626, 2662
FalI	AAGNNNNNCTT	2 cut(s)	3191, 3223
FaqI	GGGAC	1 cut(s)	445
FauI	CCCGC	1 cut(s)	2743
FauNDI	CATATG	1 cut(s)	3139
FbaI	TGATCA	1 cut(s)	2860
FblI	GTMKAC	1 cut(s)	2399
Fnu4HI	GCNGC	7 cut(s)	356, 563, 862, 1550, 1943, 2175, 2274
FokI	GGATG	7 cut(s)	965, 1402, 2323, 2664, 2930, 3239, 3337
FriOI	GRGCYC	1 cut(s)	1259
Fsp4HI	GCNGC	7 cut(s)	356, 563, 862, 1550, 1943, 2175, 2274
FspBI	CTAG	7 cut(s)	495, 602, 659, 1571, 1932, 2195, 2526
GlaI	GCGC	2 cut(s)	1518, 1537
GluI	GCNGC	7 cut(s)	356, 563, 862, 1550, 1943, 2175, 2274
GsaI	CCCAGC	5 cut(s)	414, 681, 771, 998, 3219
GsuI	CTGGAG	4 cut(s)	179, 1623, 1641, 3113
HaeII	RGCGCY	1 cut(s)	1539
HaeIII	GGCC	7 cut(s)	1818, 1869, 2357, 2957, 3192, 3234, 3304
HapII	CCGG	3 cut(s)	243, 1533, 2234
HgaI	GACGC	3 cut(s)	152, 235, 1555
HhaI	GCGC	2 cut(s)	1519, 1538
Hin1I	GRCGYC	2 cut(s)	246, 2892
Hin6I	GCGC	2 cut(s)	1517, 1536
HinP1I	GCGC	2 cut(s)	1517, 1536
HincII	GTYRAC	3 cut(s)	1363, 2787, 3286
HindII	GTYRAC	3 cut(s)	1363, 2787, 3286
HindIII	AAGCTT	3 cut(s)	80, 794, 1235
HpaII	CCGG	3 cut(s)	243, 1533, 2234
HphI	GGTGA	8 cut(s)	497, 635, 1499, 1859, 2003, 2267, 2271, 2571
Hpy99I	CGWCG	1 cut(s)	3330
HpyCH4IV	ACGT	7 cut(s)	285, 875, 988, 1251, 1886, 2875, 2892
HpySE526I	ACGT	7 cut(s)	285, 875, 988, 1251, 1886, 2875, 2892
Hsp92I	GRCGYC	2 cut(s)	246, 2892
HspAI	GCGC	2 cut(s)	1517, 1536
Kpn2I	TCCGGA	1 cut(s)	2233
Ksp22I	TGATCA	1 cut(s)	2860
LmnI	GCTCC	8 cut(s)	160, 381, 423, 779, 1087, 2236, 2504, 2555
Lsp1109I	GCAGC	6 cut(s)	549, 873, 1536, 1954, 2161, 2260
LweI	GCATC	7 cut(s)	155, 811, 1744, 1766, 2345, 2360, 3217
MaeI	CTAG	7 cut(s)	495, 602, 659, 1571, 1932, 2195, 2526
MaeII	ACGT	7 cut(s)	285, 875, 988, 1251, 1886, 2875, 2892
MfeI	CAATTG	2 cut(s)	1216, 2325
MflI	RGATCY	8 cut(s)	181, 663, 1170, 1276, 1288, 1411, 2005, 3121
MhlI	GDGCHC	6 cut(s)	338, 1183, 1205, 1259, 2845, 3281
MlsI	TGGCCA	2 cut(s)	1869, 2957
MluNI	TGGCCA	2 cut(s)	1869, 2957
MlyI	GAGTC	3 cut(s)	1070, 2192, 3281
MmeI	TCCRAC	6 cut(s)	930, 1065, 1438, 1811, 2596, 2895
Mox20I	TGGCCA	2 cut(s)	1869, 2957
Mph1103I	ATGCAT	3 cut(s)	1479, 1594, 1759
MroI	TCCGGA	1 cut(s)	2233
MroXI	GAANNNNTTC	1 cut(s)	2315
MscI	TGGCCA	2 cut(s)	1869, 2957
MslI	CAYNNNNRTG	2 cut(s)	2407, 2712
Msp20I	TGGCCA	2 cut(s)	1869, 2957
MspA1I	CMGCKG	3 cut(s)	917, 1326, 1945
MspCI	CTTAAG	1 cut(s)	3332
MspI	CCGG	3 cut(s)	243, 1533, 2234
MspR9I	CCNGG	6 cut(s)	640, 705, 1632, 2443, 2583, 3301
MunI	CAATTG	2 cut(s)	1216, 2325
Mva1269I	GAATGC	2 cut(s)	1102, 1592
MvaI	CCWGG	6 cut(s)	640, 705, 1632, 2443, 2583, 3301
MvnI	CGCG	1 cut(s)	1517
NdeI	CATATG	1 cut(s)	3139
NlaIV	GGNNCC	8 cut(s)	183, 1182, 1413, 2024, 2478, 2506, 2624, 3123
NmeAIII	GCCGAG	1 cut(s)	2925
NmuCI	GTSAC	4 cut(s)	1487, 2089, 2689, 2888
NsiI	ATGCAT	3 cut(s)	1479, 1594, 1759
NspI	RCATGY	2 cut(s)	1267, 1840
PaeR7I	CTCGAG	1 cut(s)	267
PagI	TCATGA	1 cut(s)	3238
PceI	AGGCCT	1 cut(s)	3304
PciI	ACATGT	1 cut(s)	1836
PcsI	WCGNNNNNNNCGW	1 cut(s)	3190
PctI	GAATGC	2 cut(s)	1102, 1592
PdmI	GAANNNNTTC	1 cut(s)	2315
PflMI	CCANNNNNTGG	1 cut(s)	2423
PkrI	GCNGC	7 cut(s)	357, 564, 863, 1551, 1944, 2176, 2275
PleI	GAGTC	3 cut(s)	1070, 2192, 3281
PmaCI	CACGTG	2 cut(s)	989, 2876
PmlI	CACGTG	2 cut(s)	989, 2876
PpsI	GAGTC	3 cut(s)	1070, 2192, 3281
Ppu21I	YACGTR	2 cut(s)	989, 2876
PscI	ACATGT	1 cut(s)	1836
PshAI	GACNNNNGTC	1 cut(s)	245
Psp124BI	GAGCTC	1 cut(s)	1259
Psp1406I	AACGTT	1 cut(s)	285
Psp6I	CCWGG	6 cut(s)	638, 703, 1630, 2441, 2581, 3299
PspCI	CACGTG	2 cut(s)	989, 2876
PspEI	GGTNACC	1 cut(s)	1058
PspFI	CCCAGC	5 cut(s)	410, 677, 767, 994, 3215
PspGI	CCWGG	6 cut(s)	638, 703, 1630, 2441, 2581, 3299
PspN4I	GGNNCC	8 cut(s)	183, 1182, 1413, 2024, 2478, 2506, 2624, 3123
PspPI	GGNCC	4 cut(s)	240, 1778, 2291, 3233
PstNI	CAGNNNCTG	1 cut(s)	1549
PsuI	RGATCY	8 cut(s)	181, 663, 1170, 1276, 1288, 1411, 2005, 3121
PvuII	CAGCTG	2 cut(s)	917, 1945
RsaI	GTAC	6 cut(s)	734, 1132, 1506, 2811, 2871, 3324
RsaNI	GTAC	6 cut(s)	733, 1131, 1505, 2810, 2870, 3323
RseI	CAYNNNNRTG	2 cut(s)	2407, 2712
SacI	GAGCTC	1 cut(s)	1259
SatI	GCNGC	7 cut(s)	356, 563, 862, 1550, 1943, 2175, 2274
Sau96I	GGNCC	4 cut(s)	240, 1778, 2291, 3233
SchI	GAGTC	3 cut(s)	1070, 2192, 3281
ScrFI	CCNGG	6 cut(s)	640, 705, 1632, 2443, 2583, 3301
SduI	GDGCHC	6 cut(s)	338, 1183, 1205, 1259, 2845, 3281
SfaNI	GCATC	7 cut(s)	155, 811, 1744, 1766, 2345, 2360, 3217
SfcI	CTRYAG	2 cut(s)	106, 1140
Sfr274I	CTCGAG	1 cut(s)	267
SinI	GGWCC	3 cut(s)	240, 1778, 2291
SlaI	CTCGAG	1 cut(s)	267
SmiMI	CAYNNNNRTG	2 cut(s)	2407, 2712
SmlI	CTYRAG	7 cut(s)	267, 536, 667, 797, 2241, 2430, 3332
SmoI	CTYRAG	7 cut(s)	267, 536, 667, 797, 2241, 2430, 3332
SseBI	AGGCCT	1 cut(s)	3304
SsiI	CCGC	6 cut(s)	300, 356, 728, 1326, 2020, 2750
SspI	AATATT	2 cut(s)	2056, 2908
SspMI	CTAG	7 cut(s)	495, 602, 659, 1571, 1932, 2195, 2526
SstI	GAGCTC	1 cut(s)	1259
StuI	AGGCCT	1 cut(s)	3304
StyD4I	CCNGG	6 cut(s)	638, 703, 1630, 2441, 2581, 3299
StyI	CCWWGG	3 cut(s)	1184, 2626, 2662
TaiI	ACGT	7 cut(s)	288, 878, 991, 1254, 1889, 2878, 2895
TaqI	TCGA	4 cut(s)	268, 320, 959, 2043
TaqII	GACCGA	1 cut(s)	16
TatI	WGTACW	2 cut(s)	732, 1504
TauI	GCSGC	1 cut(s)	358
TscAI	CASTG	9 cut(s)	72, 448, 2103, 2145, 2289, 2719, 2870, 3123, 3217
TseFI	GTSAC	4 cut(s)	1487, 2089, 2689, 2888
TseI	GCWGC	6 cut(s)	562, 861, 1549, 1942, 2174, 2273
Tsp45I	GTSAC	4 cut(s)	1487, 2089, 2689, 2888
TspGWI	ACGGA	3 cut(s)	708, 1917, 2419
TspRI	CASTG	9 cut(s)	72, 448, 2103, 2145, 2289, 2719, 2870, 3123, 3217
Van91I	CCANNNNNTGG	1 cut(s)	2423
Vha464I	CTTAAG	1 cut(s)	3332
VneI	GTGCAC	2 cut(s)	2841, 3277
VpaK11BI	GGWCC	3 cut(s)	240, 1778, 2291
XapI	RAATTY	6 cut(s)	262, 489, 583, 1462, 1625, 3203
XbaI	TCTAGA	1 cut(s)	2194
XceI	RCATGY	2 cut(s)	1267, 1840
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2215, 2990
XhoI	CTCGAG	1 cut(s)	267
XmiI	GTMKAC	1 cut(s)	2399
XmnI	GAANNNNTTC	1 cut(s)	2315
XspI	CTAG	7 cut(s)	495, 602, 659, 1571, 1932, 2195, 2526
ZraI	GACGTC	1 cut(s)	2893
Zsp2I	ATGCAT	3 cut(s)	1479, 1594, 1759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.