Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0010473

Physical Location & Seq

Genomic Coordinates Reverse (-)

4419436 .. 4421726

Gene Structure 2291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGCCAGAAGAAGATGAAAGCTCCGAGATCGTCATCTTTCTCAGGAAAGAACTCGAAGCCTCTCTCGAAAAGAACGGCTCGTTGGAGAAAGAAAACCATGACTTGAAGCAAGAAGTTGGTCGTCTTAAAGCTCAAATAACTTCCCTCAAAGCACACAACAATGAGAGGAAATCTGTGCTCTGGAAGAAGTTTCAAAGCACATTGGAGCAGAGTGCATTGGAGCAGAGTCCAGGGAAAGAGAGACCGAATCCGAAAGTAGACTTCACGGAATCTCAAGCCATAAAGGAAAGACCGGCAGCAAGATTATTACCAACCAATGCACCACCACCAACACCAAGGACTCCTCCTCCTCCTGCTTTGTTCAAGGAGGTAAAGGAAAATAAAGGGCCTTCAGCACCAGCACCGCCTCCTCCTCCTCCGCCCTCAAAATTATTAATCGGGTCAAGAGGAGTGCGACGTGTGCCGGAAGTAATTGAGCTGTACCGTTCACTTACAAGGAAAGATGCACACATGGAGAACAAAGCCAACCCTGCAGGAGTTCATGCTTTTGCACTTACTAAGAACATGATCGGAGAAATCGAGAACCGTTCATCTTATGTTTTAGCTATAAAGTCGGAGGTCGAAACGCAGGGAGAGTTCATAAATTTCTTGATCAGTGAGGTGGAGTCTGCAAAATTTACAAACATCGCAGACGTGGAAGCATTTGTAAATTGGCTGGATCGGCAGCTATCTTCTTTAGTTGATGAAAGAGCAGTGCTGAAGCACTTCCCGCAGTCGCCGGAACGAAAGGCGGACACGCTGCGAGAAGCCGCTTTCAGCTACAGAGACCTGAGGAATCTGAAAAACGAAGCCTCATCATTTGAGGACAACATGAAGGAGCCATCAGTCCTTGCTCTGAGAAGAATGGAAGCATTACAAGACAGGTTGGAAAGAAGTGTGAGCAGCACAGAAAGAACAAGGGAGAGTGCCAGCAAGAGGTACAGGGATTTTCAGATCCCATGGGAATGGATGCTGGACACAGGGCTGATGGGTCAGATGAAACTGAGCTCACTGAAGCTAGCCAAGGAGTACATGAAGAGAATTACCAGAGAAGTGCAGTCTAATGAATGCTCAAGAGAAGAAAATCTCCTGCTTCAAGGAGTCCGATTCGCTTTCCGGGTACACCAGTTTGCAGGTGGTTTTGATTCGGAGACGGTACTTGCATTTGAGGAACTAAAGAAGATAGGCGCGAATAGTAGAAGAAATGGCACGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

419

Amino Acids

47.52

Weight (kDa)

8.87

Isoelectric Point (pI)

57.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07120 AT1G07120
fragaria_vesca	FvH4_3g39070 FvH4_3g39070 FvH4_3g39070
malus_domestica	MD03G1065000.v1.1 MD11G1069000.v1.1
prunus_persica	Prupe.6G053900_v2.0.a1 Prupe.6G053900_v2.0.a1
pyrus_communis	pycom03g05200 pycom11g05740
rosa_chinensis	RchiOBHm_Chr5g0070381
rosa_laevigata	RLG00000036129
rosa_multiflora	Rmu_sc0007961.1_g000014
rosa_roxburghii	Rroxscaffold_1G00010820
rosa_rugosa	Rorug05G0405500
rosa_samantha	Rh5AG461000 Rh5BG479300 Rh5CG503500 Rh5DG491200
rosa_wichuraiana	Rw5G042970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1163
Acc36I	ACCTGC	1 cut(s)	1163
AccI	GTMKAC	1 cut(s)	258
AccII	CGCG	1 cut(s)	1229
AciI	CCGC	5 cut(s)	404, 419, 770, 791, 810
AclWI	GGATC	2 cut(s)	726, 988
AcsI	RAATTY	2 cut(s)	643, 674
AcuI	CTGAAG	3 cut(s)	375, 779, 1073
AfaI	GTAC	5 cut(s)	482, 980, 1070, 1161, 1197
AfiI	CCNNNNNNNGG	1 cut(s)	975
AflIII	ACRYGT	1 cut(s)	457
AgsI	TTSAA	4 cut(s)	106, 194, 364, 1136
AjiI	CACGTC	2 cut(s)	458, 694
AjnI	CCWGG	1 cut(s)	229
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
AluBI	AGCT	8 cut(s)	21, 131, 478, 605, 727, 819, 1047, 1057
AluI	AGCT	8 cut(s)	21, 131, 478, 605, 727, 819, 1047, 1057
Alw21I	GWGCWC	2 cut(s)	180, 1049
Alw26I	GTCTC	3 cut(s)	235, 819, 1184
AlwI	GGATC	2 cut(s)	726, 988
AoxI	GGCC	1 cut(s)	386
ApeKI	GCWGC	4 cut(s)	296, 724, 799, 942
ApoI	RAATTY	2 cut(s)	643, 674
AseI	ATTAAT	1 cut(s)	434
Asp700I	GAANNNNTTC	1 cut(s)	764
AspLEI	GCGC	1 cut(s)	1229
AspS9I	GGNCC	1 cut(s)	386
AsuC2I	CCSGG	1 cut(s)	1157
AsuNHI	GCTAGC	1 cut(s)	1057
AxyI	CCTNAGG	1 cut(s)	830
BaeI	ACNNNNGTAYC	2 cut(s)	1151, 1184
BanII	GRGCYC	1 cut(s)	1049
Bbv12I	GWGCWC	2 cut(s)	180, 1049
BbvI	GCAGC	4 cut(s)	308, 736, 786, 954
BccI	CCATC	2 cut(s)	889, 1021
BceAI	ACGGC	1 cut(s)	91
BciT130I	CCWGG	1 cut(s)	231
BclI	TGATCA	1 cut(s)	651
BcnI	CCSGG	1 cut(s)	1157
BcoDI	GTCTC	3 cut(s)	235, 819, 1184
BfaI	CTAG	1 cut(s)	1058
BfmI	CTRYAG	2 cut(s)	531, 820
BfuAI	ACCTGC	1 cut(s)	1163
BisI	GCNGC	5 cut(s)	297, 725, 800, 810, 943
BlsI	GCNGC	5 cut(s)	298, 726, 801, 811, 944
Bme1390I	CCNGG	2 cut(s)	231, 1157
BmgBI	CACGTC	2 cut(s)	458, 694
BmgT120I	GGNCC	1 cut(s)	386
BmiI	GGNNCC	1 cut(s)	879
BmrFI	CCNGG	2 cut(s)	231, 1157
BmsI	GCATC	2 cut(s)	493, 999
BmtI	GCTAGC	1 cut(s)	1061
BpuEI	CTTGAG	2 cut(s)	258, 1096
BpuMI	CCSGG	1 cut(s)	1157
BsaBI	GATNNNNATC	1 cut(s)	32
BsaI	GGTCTC	2 cut(s)	235, 819
BsaJI	CCNNGG	4 cut(s)	230, 335, 998, 1062
BsaXI	ACNNNNNCTCC	2 cut(s)	331, 361
Bsc4I	CCNNNNNNNGG	1 cut(s)	975
Bse118I	RCCGGY	1 cut(s)	292
Bse1I	ACTGG	1 cut(s)	1165
Bse21I	CCTNAGG	1 cut(s)	830
Bse8I	GATNNNNATC	1 cut(s)	32
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	4 cut(s)	230, 335, 998, 1062
BseGI	GGATG	1 cut(s)	1014
BseJI	GATNNNNATC	1 cut(s)	32
BseLI	CCNNNNNNNGG	1 cut(s)	975
BseMII	CTCAG	4 cut(s)	55, 821, 887, 1034
BseNI	ACTGG	1 cut(s)	1165
BseRI	GAGGAG	7 cut(s)	333, 336, 339, 399, 402, 405, 462
BseXI	GCAGC	4 cut(s)	308, 736, 786, 954
BsgI	GTGCAG	1 cut(s)	1115
Bsh1236I	CGCG	1 cut(s)	1229
BshFI	GGCC	1 cut(s)	388
BsiHKAI	GWGCWC	2 cut(s)	180, 1049
BsiSI	CCGG	4 cut(s)	293, 464, 779, 1156
BslI	CCNNNNNNNGG	1 cut(s)	975
BsmAI	GTCTC	3 cut(s)	235, 819, 1184
BsmBI	CGTCTC	1 cut(s)	1184
BsmI	GAATGC	1 cut(s)	1112
BsnI	GGCC	1 cut(s)	388
Bso31I	GGTCTC	2 cut(s)	235, 819
Bsp1286I	GDGCHC	2 cut(s)	180, 1049
Bsp143I	GATC	5 cut(s)	27, 567, 651, 718, 993
Bsp19I	CCATGG	1 cut(s)	998
BspACI	CCGC	5 cut(s)	404, 419, 770, 791, 810
BspANI	GGCC	1 cut(s)	388
BspCNI	CTCAG	4 cut(s)	54, 822, 888, 1035
BspFNI	CGCG	1 cut(s)	1229
BspLI	GGNNCC	1 cut(s)	879
BspMAI	CTGCAG	1 cut(s)	535
BspMI	ACCTGC	1 cut(s)	1163
BspOI	GCTAGC	1 cut(s)	1061
BspPI	GGATC	2 cut(s)	726, 988
BspTNI	GGTCTC	2 cut(s)	235, 819
BsrFI	RCCGGY	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	1165
BssAI	RCCGGY	1 cut(s)	292
BssECI	CCNNGG	4 cut(s)	230, 335, 998, 1062
BssMI	GATC	5 cut(s)	27, 567, 651, 718, 993
BssT1I	CCWWGG	3 cut(s)	335, 998, 1062
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	3 cut(s)	485, 587, 1195
Bst6I	CTCTTC	1 cut(s)	1070
BstC8I	GCNNGC	2 cut(s)	970, 1059
BstDEI	CTNAG	5 cut(s)	41, 558, 830, 896, 1043
BstDSI	CCRYGG	1 cut(s)	998
BstF5I	GGATG	1 cut(s)	1014
BstFNI	CGCG	1 cut(s)	1229
BstHHI	GCGC	1 cut(s)	1229
BstKTI	GATC	5 cut(s)	30, 570, 654, 721, 996
BstMAI	GTCTC	3 cut(s)	235, 819, 1184
BstMBI	GATC	5 cut(s)	27, 567, 651, 718, 993
BstMWI	GCNNNNNNNGC	4 cut(s)	460, 530, 721, 769
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	2 cut(s)	229, 1155
BstSFI	CTRYAG	2 cut(s)	531, 820
BstUI	CGCG	1 cut(s)	1229
BstV1I	GCAGC	4 cut(s)	308, 736, 786, 954
BstX2I	RGATCY	1 cut(s)	993
BstXI	CCANNNNNNTGG	1 cut(s)	1005
BstYI	RGATCY	1 cut(s)	993
Bsu36I	CCTNAGG	1 cut(s)	830
BsuRI	GGCC	1 cut(s)	388
BtgI	CCRYGG	1 cut(s)	998
BtgZI	GCGATG	1 cut(s)	670
BtrI	CACGTC	2 cut(s)	458, 694
BtsCI	GGATG	1 cut(s)	1014
BtsI	GCAGTG	1 cut(s)	759
BtsIMutI	CAGTG	3 cut(s)	661, 759, 1049
BveI	ACCTGC	1 cut(s)	1163
Cac8I	GCNNGC	2 cut(s)	970, 1059
CfoI	GCGC	1 cut(s)	1229
Cfr10I	RCCGGY	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	386
Csp6I	GTAC	5 cut(s)	481, 979, 1069, 1160, 1196
CviAII	CATG	7 cut(s)	98, 511, 542, 565, 871, 999, 1072
CviQI	GTAC	5 cut(s)	481, 979, 1069, 1160, 1196
DdeI	CTNAG	5 cut(s)	41, 558, 830, 896, 1043
DpnI	GATC	5 cut(s)	29, 569, 653, 720, 995
DpnII	GATC	5 cut(s)	27, 567, 651, 718, 993
Eam1104I	CTCTTC	1 cut(s)	1070
EarI	CTCTTC	1 cut(s)	1070
EciI	GGCGGA	2 cut(s)	408, 806
Ecl136II	GAGCTC	1 cut(s)	1047
Eco130I	CCWWGG	3 cut(s)	335, 998, 1062
Eco24I	GRGCYC	1 cut(s)	1049
Eco31I	GGTCTC	2 cut(s)	235, 819
Eco53kI	GAGCTC	1 cut(s)	1047
Eco57I	CTGAAG	3 cut(s)	375, 779, 1073
Eco81I	CCTNAGG	1 cut(s)	830
EcoICRI	GAGCTC	1 cut(s)	1047
EcoO109I	RGGNCCY	1 cut(s)	386
EcoRII	CCWGG	1 cut(s)	229
EcoT14I	CCWWGG	3 cut(s)	335, 998, 1062
EcoT38I	GRGCYC	1 cut(s)	1049
ErhI	CCWWGG	3 cut(s)	335, 998, 1062
Esp3I	CGTCTC	1 cut(s)	1184
FaeI	CATG	7 cut(s)	101, 514, 545, 568, 874, 1002, 1075
FatI	CATG	7 cut(s)	97, 510, 541, 564, 870, 998, 1071
FauI	CCCGC	1 cut(s)	777
FbaI	TGATCA	1 cut(s)	651
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	5 cut(s)	297, 725, 800, 810, 943
FokI	GGATG	1 cut(s)	1021
FriOI	GRGCYC	1 cut(s)	1049
Fsp4HI	GCNGC	5 cut(s)	297, 725, 800, 810, 943
FspBI	CTAG	1 cut(s)	1058
GlaI	GCGC	1 cut(s)	1228
GluI	GCNGC	5 cut(s)	297, 725, 800, 810, 943
HaeIII	GGCC	1 cut(s)	388
HapII	CCGG	4 cut(s)	293, 464, 779, 1156
HhaI	GCGC	1 cut(s)	1229
Hin1II	CATG	7 cut(s)	101, 514, 545, 568, 874, 1002, 1075
Hin6I	GCGC	1 cut(s)	1227
HinP1I	GCGC	1 cut(s)	1227
HinfI	GANTC	9 cut(s)	226, 247, 269, 340, 665, 835, 1140, 1146, 1184
HpaII	CCGG	4 cut(s)	293, 464, 779, 1156
Hpy166II	GTNNAC	3 cut(s)	259, 488, 1162
Hpy188III	TCNNGA	7 cut(s)	43, 65, 181, 444, 580, 649, 1113
Hpy8I	GTNNAC	3 cut(s)	259, 488, 1162
Hpy99I	CGWCG	1 cut(s)	459
HpyAV	CCTTC	2 cut(s)	399, 868
HpyCH4III	ACNGT	3 cut(s)	485, 587, 1195
HpyCH4IV	ACGT	2 cut(s)	457, 693
HpyCH4V	TGCA	9 cut(s)	215, 320, 506, 533, 551, 671, 1096, 1172, 1202
HpyF10VI	GCNNNNNNNGC	4 cut(s)	460, 530, 721, 769
HpyF3I	CTNAG	5 cut(s)	41, 558, 830, 896, 1043
HpySE526I	ACGT	2 cut(s)	457, 693
Hsp92II	CATG	7 cut(s)	101, 514, 545, 568, 874, 1002, 1075
HspAI	GCGC	1 cut(s)	1227
Ksp22I	TGATCA	1 cut(s)	651
Kzo9I	GATC	5 cut(s)	27, 567, 651, 718, 993
LmnI	GCTCC	4 cut(s)	26, 205, 220, 877
Lsp1109I	GCAGC	4 cut(s)	308, 736, 786, 954
LweI	GCATC	2 cut(s)	493, 999
MaeI	CTAG	1 cut(s)	1058
MaeII	ACGT	2 cut(s)	457, 693
MalI	GATC	5 cut(s)	29, 569, 653, 720, 995
MboI	GATC	5 cut(s)	27, 567, 651, 718, 993
MboII	GAAGA	9 cut(s)	20, 23, 196, 723, 912, 1087, 1130, 1231, 1251
MflI	RGATCY	1 cut(s)	993
MhlI	GDGCHC	2 cut(s)	180, 1049
MluCI	AATT	6 cut(s)	428, 471, 643, 674, 709, 1080
MlyI	GAGTC	4 cut(s)	235, 334, 674, 1149
MmeI	TCCRAC	3 cut(s)	63, 594, 906
MroXI	GAANNNNTTC	1 cut(s)	764
MseI	TTAA	2 cut(s)	126, 434
MslI	CAYNNNNRTG	2 cut(s)	159, 1003
MspI	CCGG	4 cut(s)	293, 464, 779, 1156
MspR9I	CCNGG	2 cut(s)	231, 1157
Mva1269I	GAATGC	1 cut(s)	1112
MvaI	CCWGG	1 cut(s)	231
MvnI	CGCG	1 cut(s)	1229
MwoI	GCNNNNNNNGC	4 cut(s)	460, 530, 721, 769
NciI	CCSGG	1 cut(s)	1157
NcoI	CCATGG	1 cut(s)	998
NdeII	GATC	5 cut(s)	27, 567, 651, 718, 993
NheI	GCTAGC	1 cut(s)	1057
NlaIII	CATG	7 cut(s)	101, 514, 545, 568, 874, 1002, 1075
NlaIV	GGNNCC	1 cut(s)	879
PaqCI	CACCTGC	1 cut(s)	1163
PcsI	WCGNNNNNNNCGW	1 cut(s)	576
PctI	GAATGC	1 cut(s)	1112
PdmI	GAANNNNTTC	1 cut(s)	764
PfeI	GAWTC	5 cut(s)	247, 269, 835, 1146, 1184
PkrI	GCNGC	5 cut(s)	298, 726, 801, 811, 944
PleI	GAGTC	4 cut(s)	234, 334, 673, 1148
PpsI	GAGTC	4 cut(s)	234, 334, 673, 1148
PshBI	ATTAAT	1 cut(s)	434
Psp124BI	GAGCTC	1 cut(s)	1049
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	879
PspPI	GGNCC	1 cut(s)	386
PstI	CTGCAG	1 cut(s)	535
PsuI	RGATCY	1 cut(s)	993
RsaI	GTAC	5 cut(s)	482, 980, 1070, 1161, 1197
RsaNI	GTAC	5 cut(s)	481, 979, 1069, 1160, 1196
RseI	CAYNNNNRTG	2 cut(s)	159, 1003
SacI	GAGCTC	1 cut(s)	1049
SaqAI	TTAA	2 cut(s)	126, 434
SatI	GCNGC	5 cut(s)	297, 725, 800, 810, 943
Sau3AI	GATC	5 cut(s)	27, 567, 651, 718, 993
Sau96I	GGNCC	1 cut(s)	386
SbfI	CCTGCAGG	1 cut(s)	535
SchI	GAGTC	4 cut(s)	235, 334, 674, 1149
ScrFI	CCNGG	2 cut(s)	231, 1157
SdaI	CCTGCAGG	1 cut(s)	535
SduI	GDGCHC	2 cut(s)	180, 1049
SfaNI	GCATC	2 cut(s)	493, 999
SfcI	CTRYAG	2 cut(s)	531, 820
SmiMI	CAYNNNNRTG	2 cut(s)	159, 1003
SmlI	CTYRAG	2 cut(s)	273, 1111
SmoI	CTYRAG	2 cut(s)	273, 1111
Sse8387I	CCTGCAGG	1 cut(s)	535
Sse9I	AATT	6 cut(s)	428, 471, 643, 674, 709, 1080
SsiI	CCGC	5 cut(s)	404, 419, 770, 791, 810
SspMI	CTAG	1 cut(s)	1058
SstI	GAGCTC	1 cut(s)	1049
StyD4I	CCNGG	2 cut(s)	229, 1155
StyI	CCWWGG	3 cut(s)	335, 998, 1062
TaaI	ACNGT	3 cut(s)	485, 587, 1195
TaiI	ACGT	2 cut(s)	460, 696
TaqI	TCGA	4 cut(s)	54, 66, 579, 621
TaqII	GACCGA	1 cut(s)	259
TasI	AATT	6 cut(s)	428, 471, 643, 674, 709, 1080
TatI	WGTACW	1 cut(s)	1068
TauI	GCSGC	1 cut(s)	812
TfiI	GAWTC	5 cut(s)	247, 269, 835, 1146, 1184
Tru1I	TTAA	2 cut(s)	126, 434
Tru9I	TTAA	2 cut(s)	126, 434
TscAI	CASTG	3 cut(s)	661, 759, 1056
TseI	GCWGC	4 cut(s)	296, 724, 799, 942
TspDTI	ATGAA	9 cut(s)	30, 530, 579, 628, 759, 887, 1052, 1088, 1119
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	3 cut(s)	661, 759, 1056
VspI	ATTAAT	1 cut(s)	434
XapI	RAATTY	2 cut(s)	643, 674
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1172
XmiI	GTMKAC	1 cut(s)	258
XmnI	GAANNNNTTC	1 cut(s)	764
XspI	CTAG	1 cut(s)	1058

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.